ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472580.1| Oryza sativa (japonica cultivar-group), predic... 232 8e-58
2dbj|AK072631.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 8e-58
3gb|AY106036.1| Zea mays PCO087760 mRNA sequence 157 4e-35
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
5emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4,... 147 4e-32
6dbj|AK101977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
7gb|AC166342.3| Mus musculus BAC clone RP24-340A12 from chromosom... 44 0.39
8gb|AC154812.2| Mus musculus BAC clone RP24-532D12 from chromosom... 44 0.39
9ref|XM_963985.1| PREDICTED: Tribolium castaneum similar to CG148... 42 1.5
10emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, ... 42 1.5
11emb|AL049488.1|ATF24G24 Arabidopsis thaliana DNA chromosome 4, B... 42 1.5
12gb|AC092436.5| Homo sapiens BAC clone RP11-302F12 from 4, comple... 42 1.5
13emb|BX828043.1|CNS0A2X5 Arabidopsis thaliana Full-length cDNA Co... 42 1.5
14gb|AF096373.1|T9A4 Arabidopsis thaliana BAC T9A4 42 1.5
15emb|AL138663.1|ATF7P3 Arabidopsis thaliana DNA chromosome 3, BAC... 40 6.0
16gb|AE010127.1| Pyrococcus furiosus DSM 3638, section 2 of 173 of... 40 6.0
17gb|AF235504.1|AF235504 Streptomyces hygroscopicus var. ascomycet... 40 6.0
18dbj|AP004242.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.0
19dbj|D84670.1| Pyrococcus furiosus gene for DNA polymerase II sub... 40 6.0 
>ref|XM_472580.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 462

 Score =  232 bits (117), Expect = 8e-58
 Identities = 254/300 (84%)
 Strand = Plus / Minus

                                                                       
Query: 150 tgctagatacagcanggtactttgtatgacgcgcctgagccatcaatttgccgctccttt 209
           |||||||||||||  ||||||| ||||| || ||||| || |||||||||||  || |||
Sbjct: 454 tgctagatacagcgaggtacttggtatggcgggcctgcgctatcaatttgcctgtctttt 395

                                                                       
Query: 210 tcttcctgaaatcaacagagataacacccactgattttccagcacgcaatagcttcgcct 269
           ||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||  |||
Sbjct: 394 tcttcctgaaatcaacagagacaacaccgactgattttccagcgcgcaacagctttccct 335

                                                                       
Query: 270 caacctctatttcttccccgatggcggcggtgtcgacgtaggacacgctgatctcgaggg 329
           |||||||||||||||||||||||  |||   |||||||||||| | | ||| |||||| |
Sbjct: 334 caacctctatttcttccccgatgctggccacgtcgacgtaggagaggttgagctcgagcg 275

                                                                       
Query: 330 agaccccgctcgtgcctaccccgctggagaagaacacggccgagcccaactggtctgcga 389
           |||| |||||||| || | ||||||||||| ||||||| |||| || | |||||| ||||
Sbjct: 274 agacaccgctcgtcccgatcccgctggagaggaacacgcccgacccgagctggtcggcga 215

                                                                       
Query: 390 gcgatgccgtgacgccgctgagaaggtacccttgggggctggctatacggggggtgacga 449
           |||  ||||||||||||||||| ||||||||    |||||||| || || ||||||||||
Sbjct: 214 gcgtcgccgtgacgccgctgaggaggtaccccgccgggctggcgatgcgcggggtgacga 155
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>dbj|AK072631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132I18, full
           insert sequence
          Length = 889

 Score =  232 bits (117), Expect = 8e-58
 Identities = 254/300 (84%)
 Strand = Plus / Minus

                                                                       
Query: 150 tgctagatacagcanggtactttgtatgacgcgcctgagccatcaatttgccgctccttt 209
           |||||||||||||  ||||||| ||||| || ||||| || |||||||||||  || |||
Sbjct: 576 tgctagatacagcgaggtacttggtatggcgggcctgcgctatcaatttgcctgtctttt 517

                                                                       
Query: 210 tcttcctgaaatcaacagagataacacccactgattttccagcacgcaatagcttcgcct 269
           ||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||  |||
Sbjct: 516 tcttcctgaaatcaacagagacaacaccgactgattttccagcgcgcaacagctttccct 457

                                                                       
Query: 270 caacctctatttcttccccgatggcggcggtgtcgacgtaggacacgctgatctcgaggg 329
           |||||||||||||||||||||||  |||   |||||||||||| | | ||| |||||| |
Sbjct: 456 caacctctatttcttccccgatgctggccacgtcgacgtaggagaggttgagctcgagcg 397

                                                                       
Query: 330 agaccccgctcgtgcctaccccgctggagaagaacacggccgagcccaactggtctgcga 389
           |||| |||||||| || | ||||||||||| ||||||| |||| || | |||||| ||||
Sbjct: 396 agacaccgctcgtcccgatcccgctggagaggaacacgcccgacccgagctggtcggcga 337

                                                                       
Query: 390 gcgatgccgtgacgccgctgagaaggtacccttgggggctggctatacggggggtgacga 449
           |||  ||||||||||||||||| ||||||||    |||||||| || || ||||||||||
Sbjct: 336 gcgtcgccgtgacgccgctgaggaggtaccccgccgggctggcgatgcgcggggtgacga 277
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>gb|AY106036.1| Zea mays PCO087760 mRNA sequence
          Length = 810

 Score =  157 bits (79), Expect = 4e-35
 Identities = 202/243 (83%)
 Strand = Plus / Minus

                                                                       
Query: 167 tactttgtatgacgcgcctgagccatcaatttgccgctccttttcttcctgaaatcaaca 226
           ||||| || ||||| ||||| ||||||||||| ||  || |||||||||||||||| || 
Sbjct: 535 tacttggtgtgacgggcctgtgccatcaatttccctgtctttttcttcctgaaatctacg 476

                                                                       
Query: 227 gagataacacccactgattttccagcacgcaatagcttcgcctcaacctctatttcttcc 286
           ||||  ||||| ||||||||||||||||| |||| |||  |||||||||||||||| |||
Sbjct: 475 gagacgacaccgactgattttccagcacgtaataactttccctcaacctctatttcctcc 416

                                                                       
Query: 287 ccgatggcggcggtgtcgacgtaggacacgctgatctcgagggagaccccgctcgtgcct 346
           |||| ||| || | ||||||  |||| ||||||||||||| ||||||||||||  ||   
Sbjct: 415 ccgacggcagccgagtcgacaaaggagacgctgatctcgatggagaccccgctgctgggg 356

                                                                       
Query: 347 accccgctggagaagaacacggccgagcccaactggtctgcgagcgatgccgtgacgccg 406
           | ||||||| |||||||||| ||||| |||| |||||| |||||||  || ||||| |||
Sbjct: 355 atcccgctgcagaagaacacagccgatcccagctggtcggcgagcgtcgctgtgacaccg 296

              
Query: 407 ctg 409
           |||
Sbjct: 295 ctg 293
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  147 bits (74), Expect = 4e-32
 Identities = 121/137 (88%)
 Strand = Plus / Plus

                                                                            
Query: 150      tgctagatacagcanggtactttgtatgacgcgcctgagccatcaatttgccgctccttt 209
                |||||||||||||  ||||||| ||||| || ||||| || |||||||||||  || |||
Sbjct: 21704233 tgctagatacagcgaggtacttggtatggcgggcctgcgctatcaatttgcctgtctttt 21704292

                                                                            
Query: 210      tcttcctgaaatcaacagagataacacccactgattttccagcacgcaatagcttcgcct 269
                ||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||  |||
Sbjct: 21704293 tcttcctgaaatcaacagagacaacaccgactgattttccagcgcgcaacagctttccct 21704352

                                 
Query: 270      caacctctatttcttcc 286
                |||||||||||||||||
Sbjct: 21704353 caacctctatttcttcc 21704369



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                            
Query: 301      gtcgacgtaggacacgctgatctcgagggagaccccgctcgtgcctaccccgctggagaa 360
                |||||||||||| | | ||| |||||| ||||| |||||||| || | ||||||||||| 
Sbjct: 21706422 gtcgacgtaggagaggttgagctcgagcgagacaccgctcgtcccgatcccgctggagag 21706481

                                                                            
Query: 361      gaacacggccgagcccaactggtctgcgagcgatgccgtgacgccgctgagaaggtaccc 420
                ||||||| |||| || | |||||| |||||||  ||||||||||||||||| ||||||||
Sbjct: 21706482 gaacacgcccgacccgagctggtcggcgagcgtcgccgtgacgccgctgaggaggtaccc 21706541
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>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20,
             complete sequence
          Length = 141915

 Score =  147 bits (74), Expect = 4e-32
 Identities = 121/137 (88%)
 Strand = Plus / Plus

                                                                         
Query: 150   tgctagatacagcanggtactttgtatgacgcgcctgagccatcaatttgccgctccttt 209
             |||||||||||||  ||||||| ||||| || ||||| || |||||||||||  || |||
Sbjct: 15850 tgctagatacagcgaggtacttggtatggcgggcctgcgctatcaatttgcctgtctttt 15909

                                                                         
Query: 210   tcttcctgaaatcaacagagataacacccactgattttccagcacgcaatagcttcgcct 269
             ||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||  |||
Sbjct: 15910 tcttcctgaaatcaacagagacaacaccgactgattttccagcgcgcaacagctttccct 15969

                              
Query: 270   caacctctatttcttcc 286
             |||||||||||||||||
Sbjct: 15970 caacctctatttcttcc 15986



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                         
Query: 301   gtcgacgtaggacacgctgatctcgagggagaccccgctcgtgcctaccccgctggagaa 360
             |||||||||||| | | ||| |||||| ||||| |||||||| || | ||||||||||| 
Sbjct: 18039 gtcgacgtaggagaggttgagctcgagcgagacaccgctcgtcccgatcccgctggagag 18098

                                                                         
Query: 361   gaacacggccgagcccaactggtctgcgagcgatgccgtgacgccgctgagaaggtaccc 420
             ||||||| |||| || | |||||| |||||||  ||||||||||||||||| ||||||||
Sbjct: 18099 gaacacgcccgacccgagctggtcggcgagcgtcgccgtgacgccgctgaggaggtaccc 18158
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>dbj|AK101977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076P04, full
           insert sequence
          Length = 1721

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                       
Query: 379 ctggtctgcgagcgatgccgtgacgccgctgagaaggtacccttgggggctggctatacg 438
           |||||| |||||||  ||||||||||||||||| ||||||||    |||||||| || ||
Sbjct: 318 ctggtcggcgagcgtcgccgtgacgccgctgaggaggtaccccgccgggctggcgatgcg 259

                      
Query: 439 gggggtgacga 449
            ||||||||||
Sbjct: 258 cggggtgacga 248
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>gb|AC166342.3| Mus musculus BAC clone RP24-340A12 from chromosome 9, complete sequence
          Length = 174085

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 225    cagagataacacccactgattt 246
              ||||||||||||||||||||||
Sbjct: 131933 cagagataacacccactgattt 131912
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>gb|AC154812.2| Mus musculus BAC clone RP24-532D12 from chromosome 9, complete sequence
          Length = 169822

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 225   cagagataacacccactgattt 246
             ||||||||||||||||||||||
Sbjct: 46957 cagagataacacccactgattt 46936
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>ref|XM_963985.1| PREDICTED: Tribolium castaneum similar to CG14838-PA (LOC657529),
            mRNA
          Length = 3186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 292  ggcggcggtgtcgacgtagga 312
            |||||||||||||||||||||
Sbjct: 1062 ggcggcggtgtcgacgtagga 1042
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>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
          Length = 199861

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   atttagattgatatatataac 38
            |||||||||||||||||||||
Sbjct: 8675 atttagattgatatatataac 8655
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>emb|AL049488.1|ATF24G24 Arabidopsis thaliana DNA chromosome 4, BAC clone  F24G24 (ESSA project)
          Length = 99856

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    atttagattgatatatataac 38
             |||||||||||||||||||||
Sbjct: 22007 atttagattgatatatataac 21987
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>gb|AC092436.5| Homo sapiens BAC clone RP11-302F12 from 4, complete sequence
          Length = 202133

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 219    aatcaacagagataacaccca 239
              |||||||||||||||||||||
Sbjct: 130848 aatcaacagagataacaccca 130828
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>emb|BX828043.1|CNS0A2X5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH47ZE05 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   atttagattgatatatataac 38
            |||||||||||||||||||||
Sbjct: 1694 atttagattgatatatataac 1674
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>gb|AF096373.1|T9A4 Arabidopsis thaliana BAC T9A4
          Length = 83922

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 18    atttagattgatatatataac 38
             |||||||||||||||||||||
Sbjct: 24934 atttagattgatatatataac 24954
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>emb|AL138663.1|ATF7P3 Arabidopsis thaliana DNA chromosome 3, BAC clone F7P3
          Length = 108227

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   cttcgcctcaacctctatttcttc 285
             |||| |||||||||||||||||||
Sbjct: 13055 cttcacctcaacctctatttcttc 13032
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>gb|AE010127.1| Pyrococcus furiosus DSM 3638, section 2 of 173 of the complete genome
          Length = 8666

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 262  cttcgcctcaacctctatttcttc 285
            |||| |||||||||||||||||||
Sbjct: 3496 cttctcctcaacctctatttcttc 3473
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>gb|AF235504.1|AF235504 Streptomyces hygroscopicus var. ascomyceticus FK520 biosynthetic gene
             cluster, partial sequence
          Length = 77534

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   cgatggcggcggtgtcgacg 307
             ||||||||||||||||||||
Sbjct: 74943 cgatggcggcggtgtcgacg 74962
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>dbj|AP004242.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-288E14, complete
              sequence
          Length = 147000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    ctgattttccagcacgcaat 259
              ||||||||||||||||||||
Sbjct: 142403 ctgattttccagcacgcaat 142422
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>dbj|D84670.1| Pyrococcus furiosus gene for DNA polymerase II subunit 1, DNA
            polymerase II subunit 2, complete cds
          Length = 8451

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 262  cttcgcctcaacctctatttcttc 285
            |||| |||||||||||||||||||
Sbjct: 1882 cttctcctcaacctctatttcttc 1859


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,145,102
Number of Sequences: 3902068
Number of extensions: 3145102
Number of successful extensions: 52347
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52298
Number of HSP's gapped (non-prelim): 47
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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