ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24k05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence 54 2e-04
2gb|AY105159.1| Zea mays PCO075778 mRNA sequence 54 2e-04
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.014
4dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.014
5dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.014

>gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence
          Length = 711

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 211 ttganaaatcttgccgggctgaagggcgcaagatcaacgatcttgg 256
           |||| ||| |||||||||||||| ||| | ||||||||||||||||
Sbjct: 652 ttgagaaaccttgccgggctgaaaggctcgagatcaacgatcttgg 607



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>gb|AY105159.1| Zea mays PCO075778 mRNA sequence
          Length = 604

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 211 ttganaaatcttgccgggctgaagggcgcaagatcaacgatcttgg 256
           |||| ||| |||||||||||||| ||| | ||||||||||||||||
Sbjct: 182 ttgagaaaccttgccgggctgaaaggctcgagatcaacgatcttgg 227



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                              
Query: 211     ttganaaatcttgccgggctgaagggcgcaagatcaacgatcttggc 257
               |||| ||| ||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 2978646 ttgagaaaccttgctgggctgaacggcgcgagatcgacgatcttggc 2978600



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>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0024L18
          Length = 150128

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 211   ttganaaatcttgccgggctgaagggcgcaagatcaacgatcttggc 257
             |||| ||| ||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 24701 ttgagaaaccttgctgggctgaacggcgcgagatcgacgatcttggc 24655



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>dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D11, full
            insert sequence
          Length = 1364

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 211  ttganaaatcttgccgggctgaagggcgcaagatcaacgatcttggc 257
            |||| ||| ||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 1175 ttgagaaaccttgctgggctgaacggcgcgagatcgacgatcttggc 1129


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,253,844
Number of Sequences: 3902068
Number of extensions: 1253844
Number of successful extensions: 17461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17453
Number of HSP's gapped (non-prelim): 8
length of query: 269
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 247
effective length of database: 17,147,199,772
effective search space: 4235358343684
effective search space used: 4235358343684
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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