ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24j20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y436_MYCPN (P75342) Hypothetical lipoprotein MG307 homolog precu... 28 8.2
2TRBG_RHISN (P55404) Probable conjugal transfer protein trbG prec... 28 8.2

>Y436_MYCPN (P75342) Hypothetical lipoprotein MG307 homolog precursor|
            (A05_orf1244)
          Length = 1244

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -3

Query: 295  PQSILG---HHGSSTFDK*KQSSSMDSGQEQVCNFFVQHDSRGQKNNIQNPSTLTLVSKQ 125
            PQ + G   ++ +S  +  + + ++D       NFF +  ++     IQ  ++L LV KQ
Sbjct: 971  PQGVFGSYFNYENSASEVKESTQTLDPN-----NFFYKTTTKPTVQAIQQVASLALVQKQ 1025

Query: 124  VLGQMTTNHF 95
             + Q +T+H+
Sbjct: 1026 QMQQNSTDHY 1035



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>TRBG_RHISN (P55404) Probable conjugal transfer protein trbG precursor|
          Length = 270

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 151 STLTLVSKQVLGQMTTNHFRGTTCL*SWKGTA 56
           +TL   S      MTTN  +GT+    W+GTA
Sbjct: 14  ATLVFASAAEAQSMTTNEVKGTSISRKWRGTA 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,573,013
Number of Sequences: 219361
Number of extensions: 1244118
Number of successful extensions: 2459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2458
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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