>YOD3_CAEEL (P34595) Hypothetical protein ZC262.3 in chromosome III|
          Length = 773

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
 Frame = +1

Query: 136 FLGLPNMQCPHLLGC-CIRATPSHIVCF------LINLKSFYG 243
           FL L   +CP +LGC C+R +  +I CF      L+ ++  YG
Sbjct: 31  FLDLQLEKCPQVLGCRCVRDSTRNIQCFSIDESKLLEIQKIYG 73

>NETR_SAGLB (Q5G265) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 208 RYGWG*HGCSNQGDGGIACWANQGNKRYS 122
           R  WG H CS++ D GIAC+      R S
Sbjct: 467 RRQWGRHDCSHREDVGIACYPGSEGHRLS 495

>SOX1_MOUSE (P53783) SOX-1 protein|
          Length = 391

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 232 SFYGG---GEPSARAAAVGSGVTGQRTASAVAARTSPSARLISAGSLV 366
           S YGG   G  +A AAA G        A+A AA  + S  L + GSLV
Sbjct: 271 SGYGGIPYGAAAAAAAAAGGAHQNSAVAAAAAAAAASSGALGALGSLV 318

>DMBT1_MOUSE (Q60997) Deleted in malignant brain tumors 1 protein precursor|
           (CRP-ductin) (Vomeroglandin)
          Length = 2085

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 202 GWG*HGCSNQGDGGIACWANQGNKRYSEKCVR*QWWRHG 86
           GW  H C +Q D G+ C A+Q +           WW  G
Sbjct: 269 GWLSHNCGHQEDAGVICSASQSSSPTP------GWWNPG 301

>YGN1_YEAST (P53127) Hypothetical 163.2 kDa protein in RPL1B-CEG1 intergenic|
            region
          Length = 1403

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +1

Query: 160  CPHLLGCCIRATPSHIVCFLINLKSFYGGG---EPSARAAAV 276
            CP  L C    T  H+VC L N    YG G   +P+    AV
Sbjct: 1129 CPDALKCTSLGTWVHLVCSLFNEDIKYGNGQSMQPALNTTAV 1170

>DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein precursor|
            (Glycoprotein 340) (Gp-340) (Surfactant
            pulmonary-associated D-binding protein)
          Length = 2413

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 202  GWG*HGCSNQGDGGIACWANQGNKRYSEKCVR*QWWRHGRSSVVTTSR 59
            GW  H C +  D G+ C A Q N   ++      WW     +  TT+R
Sbjct: 1723 GWLTHNCGHHEDAGVICSATQINSTTTD------WW---HPTTTTTAR 1761

>NETR_MOUSE (O08762) Neurotrypsin precursor (EC 3.4.21.-) (Motopsin)|
           (Brain-specific serine protease 3) (BSSP-3)
          Length = 761

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 208 RYGWG*HGCSNQGDGGIACWANQGNKRYS 122
           R  WG H CS++ D G+ C+ +    R S
Sbjct: 353 RRQWGRHDCSHREDVGLTCYPDSDGHRLS 381

>CLCNX_USTMA (P0C197) Probable chloride channel protein UM03490-D|
          Length = 1131

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 332 GDVLAATADAVLCPVTP--LPTAAARAEGSPPP*KLLRFIRKHTIW 201
           G   AAT  A + P TP   PTAA RA         +R I  H +W
Sbjct: 213 GAAAAATDSAPILPATPAATPTAAIRAVAQEAYNLTIRAIPDHQLW 258

>C163B_HUMAN (Q9NR16) Scavenger receptor cysteine-rich type 1 protein M160|
            precursor (CD163 antigen-like 1) (CD163b antigen)
          Length = 1453

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 202  GWG*HGCSNQGDGGIACWANQGNKRYSE 119
            GWG H C ++ D G+ C      + YSE
Sbjct: 1119 GWGQHDCRHKEDAGVICSEFTALRLYSE 1146

>SOX3_HUMAN (P41225) Transcription factor SOX-3|
          Length = 446

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 232 SFYGGGEPSARAAAVGSGVTGQRTASAVAARTSPSARLIS-AGSLV 366
           S YGG  PSA AAA  +   GQ+ A+A AA  + +A  +   GS+V
Sbjct: 331 SGYGGMAPSATAAA--AAAYGQQPATAAAAAAAAAAMSLGPMGSVV 374

>UPPP_SYNPX (Q7U482) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 287

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -2

Query: 329 DVLAATADAVLCPVTPLPTAAARAEGSPPP*KLLRFIRKHTIWLGVA 189
           D LAATADA   P+  +   AA          LL+F+++H+ WL VA
Sbjct: 223 DALAATADAGPLPLV-IGILAATVVSWLAIDWLLKFLQRHSTWLFVA 268

>E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ETS-related|
           protein E74B)
          Length = 883

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 320 AATADAVLCPVTPL---PTAAARAEGSPP 243
           +AT   V  PVTP    P AAA AE SPP
Sbjct: 54  SATPTPVASPVTPTSPPPAAAAPAEASPP 82

>SOX3_MOUSE (P53784) Transcription factor SOX-3|
          Length = 375

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 232 SFYGGGEPSARAAAVGSGVTGQRTASAVAARTSPSARLIS-AGSLV 366
           S YGG  PSA AAA  +   GQ+ A+A AA  + +A  +   GS+V
Sbjct: 260 SGYGGMAPSAAAAA--AAAYGQQPATAAAAAAAAAAMSLGPMGSVV 303

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 153 HAMPPSPWLLHPCYPQPYRMFPNKSQ 230
           H++   P L HP  PQP+ + P  SQ
Sbjct: 846 HSLQTGPLLQHPGPPQPFGLTPQSSQ 871

>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 356 PADIRRAEGDVLAATADAVLCPVTPLPTAAARAEGSPPP 240
           PA    A   V+ A   +   P TP PT AA    SP P
Sbjct: 12  PATAAAAPAPVVTAAPASAPTPSTPAPTPAATPAASPAP 50

>SYFB_SYMTH (Q67QF2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 892

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 226 LKSFYGGGEPSARAAAVGSGVTGQRTASAVAARTSPSAR 342
           L++  GGGE   +AAA G GV+    +  +     P+ R
Sbjct: 507 LEALLGGGESDGKAAASGEGVSPGGASDGILVVVVPTRR 545

>NETR_TRAPH (Q5G266) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 208 RYGWG*HGCSNQGDGGIACWANQGNKRYS 122
           R  WG H CS++ D  IAC+      R S
Sbjct: 467 RRQWGRHDCSHREDVSIACYPGSEGHRLS 495

>NETR_MACMU (Q5G267) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 875

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 208 RYGWG*HGCSNQGDGGIACWANQGNKRYS 122
           R  WG H CS+  D  IAC+      R S
Sbjct: 467 RRQWGQHDCSHHEDVSIACYPGSEGHRLS 495

>EGR4_MOUSE (Q9WUF2) Early growth response protein 4 (EGR-4)|
          Length = 478

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 PSARAAAVGSGVTGQRTASAVAARTSPSARLISAGS 360
           P AR +AVG+ V    + S  A    P+ARL  AG+
Sbjct: 225 PEARFSAVGTKVEDLLSISCPAELPGPAARLYQAGA 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,306,511
Number of Sequences: 219361
Number of extensions: 837088
Number of successful extensions: 3251
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3242
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)