ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal24i21 |
|---|---|
| Clone Library Name | barley_pub |
>UBP35_HUMAN (Q9P2H5) Ubiquitin carboxyl-terminal hydrolase 35 (EC 3.1.2.15)| (Ubiquitin thioesterase 35) (Ubiquitin-specific-processing protease 35) (Deubiquitinating enzyme 35) Length = 1017 Score = 32.7 bits (73), Expect = 0.79 Identities = 21/88 (23%), Positives = 38/88 (43%) Frame = +3 Query: 270 SNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNI 449 S R+E+E G+ ++ +E+ G+ E GEG + E+E V++ Sbjct: 671 SQEERIEREEEGKEERTEKEEVGEEEESTR--------GEGEREKEEEVEEEEEKVEKET 722 Query: 450 AEERREPEQRDSDATKPR*YLSSPHGER 533 +E + ++ DS + P GER Sbjct: 723 EKEAEQEKEEDSLGAGTHPDAAIPSGER 750
>VATI1_TREPA (O83444) V-type ATP synthase subunit I 1 (EC 3.6.3.14) (V-type| ATPase subunit I 1) Length = 622 Score = 32.3 bits (72), Expect = 1.0 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -3 Query: 515 RKVSSRLGSVTIALLGLSSLFSDVAFYWAVLIFFLQRGPIAPLSEEITEP--ENSYIGLG 342 + V+ + +V ALLG+ ++F+DV Y + L G I+ E+T P N LG Sbjct: 513 QSVADSMKNVINALLGIVNVFADVMSYIRLWAVGLAGGAISATVNEMTHPLFANFLAFLG 572 Query: 341 VAILFLG 321 + +L G Sbjct: 573 IVLLLFG 579
>VGF_HUMAN (O15240) Neurosecretory protein VGF precursor| Length = 616 Score = 32.0 bits (71), Expect = 1.3 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 12/99 (12%) Frame = +3 Query: 213 VGGR---EAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLL 383 +GGR EAA E+ + + E RR +ERVG+ D++ E +AEAD A + L Sbjct: 346 LGGRGLQEAAEERESAREEEEAEQERRGGEERVGEEDEEAAEA-AEAEADEAERARQNAL 404 Query: 384 -------GE--GSDRAPLQEEDEHRPVKRNIAEERREPE 473 GE D+ +E HR + EE E E Sbjct: 405 LFAEEEDGEAGAEDKRSQEETPGHRRKEAEGTEEGGEEE 443
>IF2_YERPS (Q66F60) Translation initiation factor IF-2| Length = 892 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +3 Query: 210 TVGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQ-NGDAEADVAVLGLRYLLG 386 + GG+ +V E + + ++ + + QA ++ +EQ +AEA + Sbjct: 74 STGGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQAQREAEEQAQREAEATAQKIAEEKAKR 133 Query: 387 EGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKP 500 E ++A + ++ KR AE+ + Q+ + TKP Sbjct: 134 EAEEQAKREAAEK---AKRQAAEKEKVTNQQTDEKTKP 168
>IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2| Length = 892 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +3 Query: 210 TVGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQ-NGDAEADVAVLGLRYLLG 386 + GG+ +V E + + ++ + + QA ++ +EQ +AEA + Sbjct: 74 STGGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQAQREAEEQAQREAEATAQKIAEEKAKR 133 Query: 387 EGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKP 500 E ++A + ++ KR AE+ + Q+ + TKP Sbjct: 134 EAEEQAKREAAEK---AKRQAAEKEKVTNQQTDEKTKP 168
>MFAP1_MOUSE (Q9CQU1) Microfibrillar-associated protein 1| Length = 439 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = +3 Query: 372 RYLLGEGSDRAPLQ---EEDEHRPVKRNIAEERREPEQRDSDAT 494 RY+ G+ D AP++ EEDE + E+ EPE+++ D++ Sbjct: 38 RYVSGKRPDYAPMESSDEEDEEFQFIKKAKEQEAEPEEQEEDSS 81
>MFAP1_HUMAN (P55081) Microfibrillar-associated protein 1| Length = 439 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = +3 Query: 372 RYLLGEGSDRAPLQ---EEDEHRPVKRNIAEERREPEQRDSDAT 494 RY+ G+ D AP++ EEDE + E+ EPE+++ D++ Sbjct: 38 RYVSGKRPDYAPMESSDEEDEEFQFIKKAKEQEAEPEEQEEDSS 81
>PRGR_CHICK (P07812) Progesterone receptor (PR)| Length = 786 Score = 31.2 bits (69), Expect = 2.3 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Frame = +3 Query: 255 SKVEISNLRRVEKERVGQADQQPQEQNGDAEA-DVAVLGLRYLLGEGSDRAPLQEEDEHR 431 ++V+ R R G Q G+AE DVA+ GL Y + + E+E Sbjct: 2 TEVKSKETRAPSSARDGAVLLQAPPSRGEAEGIDVALDGLLYPRSSDEEEEEEENEEEEE 61 Query: 432 PVKRNIAEERREPEQRDSDATKPR 503 + EE E E+ D D R Sbjct: 62 EEEPQQREEEEEEEEEDRDCPSYR 85
>IF2_ERWCT (Q6D9A5) Translation initiation factor IF-2| Length = 900 Score = 31.2 bits (69), Expect = 2.3 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Frame = +3 Query: 90 HKKKLLLFYFATARSTGASQGSKLFL*SQGIAKMAKHLTDTVGGREAAVSFETLQSKVEI 269 H+K+ LL + R S KL L Q + ++ T GG+ +V E +++ + Sbjct: 40 HEKETLLAHLNRDRGNAPS---KLTL--QRKTRSTLNVPST-GGKSKSVQIEVRKTRTYV 93 Query: 270 SN----LRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEH-RP 434 ++ E+E + + + Q Q E LR + A Q + E Sbjct: 94 KRDPIEAQQAEEEEQARREAEEQAQRAAEEQVKREADLRETAEKAKRAADEQAKREAAEK 153 Query: 435 VKRNIAEERREPEQRDSDATKPR*YLSSPHGERYAAAVKL 554 KR++AE+ + Q++ + TKP S +R A A +L Sbjct: 154 AKRDVAEKEKVTNQQNENMTKP---AQSEKAKREAEAAEL 190
>THO1_YEAST (P40040) Protein THO1| Length = 218 Score = 30.8 bits (68), Expect = 3.0 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%) Frame = +3 Query: 267 ISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRN 446 + L + ++E G+++ PQEQN + +GS+ A ++E P +N Sbjct: 31 VQRLIKDDEESKGESEVSPQEQNQE---------------QGSEPAAIEE-----PASQN 70 Query: 447 IAE---------ERREPEQRDSDATKPR*YLSSPHGERYAAA 545 I E E EP++ + D KP S+ E AA Sbjct: 71 ITEKKEVSSEPKETNEPKEENKDVQKPSDGPSATASENEQAA 112
>GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing factor) (ADF)| (Brevin) Length = 780 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = +3 Query: 240 FETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEE 419 FE L++ +R + ER G+A E+ G+ EA + VLG + L EG++ ++ Sbjct: 233 FERLKATQVSKGIR--DNERSGRAQVHVSEEGGEPEAMLQVLGPKPALPEGTEDTAKEDA 290 Query: 420 DEHRPVK 440 R K Sbjct: 291 ANRRLAK 297
>FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 437 Score = 30.8 bits (68), Expect = 3.0 Identities = 24/93 (25%), Positives = 39/93 (41%) Frame = +1 Query: 139 EHHKAPSYSYDHKESRRWQNISQIQLEEEKPR*VSKLFSQKLKSVTCEGSKRNG*GRQTS 318 +HH + +DH + +N + Q EEE+P+ K K K EG + ++ + Sbjct: 263 DHHHHHDHDHDHDHEHKSKNKKRKQ-EEEEPKKEHKDKKVKFKKDLEEGPTK----KEKA 317 Query: 319 SPRNKMATPRPM*LFSGSVISSERGAIGPLCRK 417 + TP+ L G VI GP +K Sbjct: 318 ESKKADKTPKRRTLEGGVVIEDRTVGDGPAAKK 350
>EMRY_ECOLI (P52600) Multidrug resistance protein Y| Length = 512 Score = 30.4 bits (67), Expect = 3.9 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 10/64 (15%) Frame = -3 Query: 536 IALAMWGRKVSSRLGSVTIALL-----GLSSLFSDVAFYWAVLIFF-----LQRGPIAPL 387 IA+ + GR ++ R+G + + LL LSSL ++ VLIFF L GP+ PL Sbjct: 68 IAIPVTGR-LAQRIGELRLFLLSVTFFSLSSLMCSLSTNLDVLIFFRVVQGLMAGPLIPL 126 Query: 386 SEEI 375 S+ + Sbjct: 127 SQSL 130
>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-binding factor| 1) (UBF-1) (Autoantigen NOR-90) Length = 764 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/81 (23%), Positives = 33/81 (40%) Frame = +3 Query: 246 TLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDE 425 TLQSK E +++ + +++ ++NGD+ D G D + EDE Sbjct: 670 TLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSED------------GGDSSESSSEDE 717 Query: 426 HRPVKRNIAEERREPEQRDSD 488 N ++ E + D D Sbjct: 718 SEDGDENEEDDEDEDDDEDDD 738
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 30.4 bits (67), Expect = 3.9 Identities = 24/90 (26%), Positives = 38/90 (42%) Frame = +3 Query: 312 DQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDA 491 D+ EQ D EA+ GL L+G +EED+ +K EE E E D + Sbjct: 788 DESSSEQESDYEAETTAPGLAALMGGPKAIEEDEEEDDAFVIK----EEEEEVEVEDDEE 843 Query: 492 TKPR*YLSSPHGERYAAAVKLSCGDAIDGI 581 + + +R V + G+A++ I Sbjct: 844 EEK----ADTEVDRKVETVSEAVGEAVEEI 869
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 30.0 bits (66), Expect = 5.1 Identities = 19/50 (38%), Positives = 22/50 (44%) Frame = +3 Query: 384 GEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKPR*YLSSPHGER 533 GEG D DE RP +R +E REP R D PR + G R Sbjct: 921 GEGRDEDRSHRRDEERP-RRLGDDEDREPSLRPDDDRVPRRGMDDDRGPR 969
>PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC| 3.6.1.-) Length = 1186 Score = 30.0 bits (66), Expect = 5.1 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +3 Query: 399 RAPLQEEDEHRPVKRNIAEERREPEQRDSD 488 RA ++ED +RP +R+ + +RR RD D Sbjct: 71 RADYRDEDTYRPSRRDRSRDRRRSRDRDDD 100
>MRAW_PSEPK (Q88N84) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 315 Score = 30.0 bits (66), Expect = 5.1 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = +3 Query: 213 VGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQE---QNGDAEADVAVLGLRYLL 383 VGGR A +SF +L+ ++ +R++ K G+AD P+ Q+ E + ++G Sbjct: 236 VGGRLAVISFHSLEDRIVKLFMRKLVK---GEADNLPRNLPVQHKVFEPKIKLIGKAQFA 292 Query: 384 GEGSDRAPLQEEDEHRPVKRNIAEERR 464 E A L+ R +AE+ R Sbjct: 293 SE----AELKANPRSRSAVMRVAEKLR 315
>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1| light chain LC1] Length = 2468 Score = 30.0 bits (66), Expect = 5.1 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Frame = +3 Query: 174 QGIAKMAKHLTDTVGGREAAVSFETLQSKVEISNLRRVEKER-----VGQADQQP--QEQ 332 QG+ + K + G E++ + + + K E E++ V + P E+ Sbjct: 918 QGVDDIEKFEDEGAGFEESSETGD-YEEKAETEEAEEPEEDGEEHVCVSASKHSPTEDEE 976 Query: 333 NGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKPR 503 + AEAD + R + G DRA EED +++ AE+ E + A R Sbjct: 977 SAKAEADAYIREKRESVASGDDRA---EEDMDEAIEKGEAEQSEEEADEEDKAEDAR 1030
>VG29_BPT4 (P13337) Tail-tube assembly protein Gp29 (Tail length regulator)| (Folylpolyglutamate synthase) (EC 6.3.2.17) (Tetrahydrofolylpolyglutamate synthase) Length = 590 Score = 30.0 bits (66), Expect = 5.1 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = +3 Query: 129 RSTGASQGSKLFL*SQGIAKMAKHLTDTVGGREAAVSFETLQSKVEISNLRRVEKERVGQ 308 + G S GSKL + + + T G ++ S T++S + + + E VG Sbjct: 96 KEIGESLGSKL----DKLTSLLEQKIQTAGIQQTGTSLATVESAIPVKVVEDDTAESVGP 151 Query: 309 ADQQPQEQNGDAEAD 353 P+ N D +AD Sbjct: 152 LLPAPEAVNNDPDAD 166
>ENV_SIVSP (P19503) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 889 Score = 29.6 bits (65), Expect = 6.7 Identities = 8/27 (29%), Positives = 18/27 (66%) Frame = -3 Query: 89 VASESSPCVRVEQCSPVHRLPCVNCSY 9 V ++S PC+++ C+ + + P V+C + Sbjct: 151 VVNDSDPCIKINNCTGLEQEPMVSCKF 177
>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)| [Contains: MAP1 light chain LC1] Length = 2459 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 327 EQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSD 488 E+ AEADV + R + G DRA EED +++ AE+ E + + D Sbjct: 967 EEIAKAEADVHIKEKRESVASGDDRA---EEDMDEALEKGEAEQSEEEGEEEED 1017
>ITSN1_RAT (Q9WVE9) Intersectin-1 (EH domain and SH3 domain regulator of| endocytosis 1) Length = 1217 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 14/108 (12%) Frame = +3 Query: 249 LQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEH 428 + SK ++ R +E ER+ Q +Q+ + + + + ++ + + +Q+E++ Sbjct: 612 IHSKQQLQKQRSIEAERLKQKEQERKSLELEKQKEEGQRRVQERDKQWQEH--VQQEEQQ 669 Query: 429 RP--------------VKRNIAEERREPEQRDSDATKPR*YLSSPHGE 530 RP VK+ AEER +PE +D + L PH E Sbjct: 670 RPRKPHEEDKLKREDSVKKKEAEERAKPEVQDKQSR-----LFHPHQE 712
>TPR_HUMAN (P12270) Nucleoprotein TPR| Length = 2349 Score = 29.6 bits (65), Expect = 6.7 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 7/98 (7%) Frame = +3 Query: 243 ETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRA------ 404 ET+ +E + + R EKER+ Q QQ Q + E D +L L+ E S+++ Sbjct: 1267 ETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELD--ILPLQEANAELSEKSGMLQAE 1324 Query: 405 -PLQEEDEHRPVKRNIAEERREPEQRDSDATKPR*YLS 515 L EED R RN + +Q+D D + R LS Sbjct: 1325 KKLLEEDVKRWKARN---QHLVSQQKDPDTEEYRKLLS 1359
>SVF1_CANAL (Q5ABA2) Survival factor 1| Length = 382 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = +1 Query: 58 TLTQGELSLATTRKNSCFFILLLQGALEHHKAPSYSYDHKESRRWQNISQIQLEEEKPR 234 T+T + + F++ LQG HH A S+++ + +S N S +Q+E P+ Sbjct: 195 TITTADNKVIEINNGLTMFVMALQGMKPHHAAKSWNFMNFQS---ANHSAVQMEFTTPK 250
>BFSP1_HUMAN (Q12934) Filensin (Beaded filament structural protein 1) (Lens| fiber cell beaded-filament structural protein CP 115) (CP115) (Lens intermediate filament-like heavy) (LIFL-H) Length = 665 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +3 Query: 384 GEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKP 500 G+ D+ P+ +E E + EE+RE E+RD ++ +P Sbjct: 534 GQPIDQQPIDKEIEPDGAELEGPEEKREGEERDEESRRP 572
>PTMS_MOUSE (Q9D0J8) Parathymosin| Length = 100 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/65 (29%), Positives = 32/65 (49%) Frame = +3 Query: 285 VEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERR 464 VE+E G A+++ +E D E D EG + +EE++ PV++ AEE Sbjct: 37 VEEEENG-AEEEEEETAEDGEDD----------DEGDEEDEEEEEEDEGPVRKRTAEEED 85 Query: 465 EPEQR 479 E + + Sbjct: 86 EADPK 90
>NU5M_MARPO (P26849) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 669 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 542 GRIALAMWGRKVSSR-LGSVTIALLGLSSLFSDVAFYWAVL 423 G A +GR + SR + VT + LSS+FS +AFY L Sbjct: 12 GSFAAGFFGRFLGSRGVAVVTTTCVSLSSIFSCIAFYEVAL 52
>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)| (MAP1(X)) [Contains: MAP1 light chain LC1] Length = 2464 Score = 29.3 bits (64), Expect = 8.7 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 7/139 (5%) Frame = +3 Query: 174 QGIAKMAKHLTDTVGGREAAVSFETLQSKVEISNLRRVEKERVGQAD-----QQPQE--Q 332 QG+ + K + G E++ + + + K E E++ A P E + Sbjct: 915 QGVDDIEKFEDEGAGFEESSETGD-YEEKAETEEAEEPEEDGEDNASGSASKHSPTEDDE 973 Query: 333 NGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKPR*YL 512 + AEADV + R + G DRA +D + +EE E E + DA + Sbjct: 974 SAKAEADVHLKEKRESVVSGDDRAEEDMDDVLEKGEAEQSEEEGEEEDKAEDAREEGYEP 1033 Query: 513 SSPHGERYAAAVKLSCGDA 569 E Y AV +A Sbjct: 1034 DKTEAEDYVMAVADKAAEA 1052
>ITSN1_MOUSE (Q9Z0R4) Intersectin-1 (EH and SH3 domains protein 1)| Length = 1714 Score = 29.3 bits (64), Expect = 8.7 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%) Frame = +3 Query: 249 LQSKVEISNLRRVEKERVGQADQQP-----QEQNGDAEADVAVLGLRYLLGEGSDRAPL- 410 + SK ++ R +E R+ Q +Q+ ++Q DA+ V ++L + P Sbjct: 612 IHSKQQLQKQRSLEAARLKQKEQERKSLELEKQKEDAQRRVQERDKQWLEHVQQEEQPRP 671 Query: 411 ---QEEDEHR---PVKRNIAEERREPEQRDSDATKPR*YLSSPHGE 530 EED + V++ AEER +PE +D + L PH E Sbjct: 672 RKPHEEDRLKREDSVRKKEAEERAKPEMQDKQSR-----LFHPHQE 712
>HDAC5_MOUSE (Q9Z2V6) Histone deacetylase 5 (HD5) (Histone deacetylase mHDA1)| Length = 1113 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/64 (25%), Positives = 29/64 (45%) Frame = +3 Query: 297 RVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQ 476 + G+ +QP + E ++ LLGEG+ P + E + ++ EE E E+ Sbjct: 527 KTGELSRQPTTHPEETEEELTEQQ-EALLGEGALTIPREGSTESESTQEDLEEEEEEEEE 585 Query: 477 RDSD 488 + D Sbjct: 586 EEED 589 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,767,513 Number of Sequences: 219361 Number of extensions: 1513326 Number of successful extensions: 5277 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 5066 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5267 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
