ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507516.1| PREDICTED Oryza sativa (japonica cultivar-group... 145 6e-32
2ref|XM_467098.1| Oryza sativa (japonica cultivar-group), mRNA 145 6e-32
3ref|XM_507515.1| PREDICTED Oryza sativa (japonica cultivar-group... 145 6e-32
4ref|XM_506889.2| PREDICTED Oryza sativa (japonica cultivar-group... 145 6e-32
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 6e-32
6dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 145 6e-32
7dbj|AK106154.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 6e-32
8dbj|AK104793.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 6e-32
9dbj|AK098925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 6e-32
10dbj|AK064950.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 6e-32
11emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 145 6e-32
12dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.16
13emb|X62666.1|PAXCPSP Pseudomonas aeruginosa genes xcpR, xcpS, xc... 42 0.65
14gb|AC099781.2| Homo sapiens chromosome 3 clone RP11-791E14, comp... 42 0.65
15gb|AE004734.1| Pseudomonas aeruginosa PAO1, section 295 of 529 o... 42 0.65
16gb|AC161120.5| Mus musculus BAC clone RP23-84A2 from chromosome ... 40 2.6
17ref|XM_550056.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.6
18ref|XM_360561.1| Magnaporthe grisea 70-15 predicted protein (MG1... 40 2.6
19gb|AY264531.1| Camissonia arenaria trnL gene, partial sequence; ... 40 2.6
20gb|AC159999.6| Mus musculus BAC clone RP23-6P9 from chromosome 1... 40 2.6
21gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosom... 40 2.6
22gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, compl... 40 2.6
23gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, c... 40 2.6
24gb|AC026898.8| Homo sapiens chromosome 18, clone RP11-767C4, com... 40 2.6
25emb|AL669857.7| Mouse DNA sequence from clone RP23-291B8 on chro... 40 2.6
26gb|AC084262.6| Homo sapiens chromosome 8, clone RP4-676L2, compl... 40 2.6
27gb|AF165142.2| Homo sapiens chromosome 8 clone CTA-392C11 map ce... 40 2.6
28gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 ma... 40 2.6
29gb|AC105999.4| Homo sapiens chromosome 8, clone CTA-392C11, comp... 40 2.6
30gb|AC091560.6| Homo sapiens chromosome 8, clone RP11-104D16, com... 40 2.6
31gb|CP000249.1| Frankia sp. CcI3, complete genome 40 2.6
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
33gb|AC154840.2| Mus musculus BAC clone RP23-61I7 from chromosome ... 40 2.6
34dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 2.6
35dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
36dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
37gb|AC102198.9| Mus musculus chromosome 15, clone RP24-499H13, co... 40 2.6
38dbj|AK072170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.6
39emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chr... 40 2.6
40gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome... 40 2.6 
>ref|XM_507516.1| PREDICTED Oryza sativa (japonica cultivar-group), P0491E01.40 mRNA
          Length = 1910

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 107  gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
            |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 1741 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 1682

                                                 
Query: 167  gcggggtcgacgccgagctcccgggcgcggttcacgt 203
            | |||||||||||||||||||||||||||||||||||
Sbjct: 1681 gaggggtcgacgccgagctcccgggcgcggttcacgt 1645
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>ref|XM_467098.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1910

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 107  gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
            |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 1741 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 1682

                                                 
Query: 167  gcggggtcgacgccgagctcccgggcgcggttcacgt 203
            | |||||||||||||||||||||||||||||||||||
Sbjct: 1681 gaggggtcgacgccgagctcccgggcgcggttcacgt 1645
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>ref|XM_507515.1| PREDICTED Oryza sativa (japonica cultivar-group), P0491E01.40 mRNA
          Length = 1933

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 107  gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
            |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 1742 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 1683

                                                 
Query: 167  gcggggtcgacgccgagctcccgggcgcggttcacgt 203
            | |||||||||||||||||||||||||||||||||||
Sbjct: 1682 gaggggtcgacgccgagctcccgggcgcggttcacgt 1646
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>ref|XM_506889.2| PREDICTED Oryza sativa (japonica cultivar-group), P0491E01.40 mRNA
          Length = 1964

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 107  gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
            |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 1742 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 1683

                                                 
Query: 167  gcggggtcgacgccgagctcccgggcgcggttcacgt 203
            | |||||||||||||||||||||||||||||||||||
Sbjct: 1682 gaggggtcgacgccgagctcccgggcgcggttcacgt 1646
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                            
Query: 107      gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
                |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 26399879 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 26399820

                                                     
Query: 167      gcggggtcgacgccgagctcccgggcgcggttcacgt 203
                | |||||||||||||||||||||||||||||||||||
Sbjct: 26399819 gaggggtcgacgccgagctcccgggcgcggttcacgt 26399783
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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:P0491E01
          Length = 136150

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                          
Query: 107    gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
              |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 132231 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 132172

                                                   
Query: 167    gcggggtcgacgccgagctcccgggcgcggttcacgt 203
              | |||||||||||||||||||||||||||||||||||
Sbjct: 132171 gaggggtcgacgccgagctcccgggcgcggttcacgt 132135
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>dbj|AK106154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A03, full
            insert sequence
          Length = 1910

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 107  gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
            |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 1741 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 1682

                                                 
Query: 167  gcggggtcgacgccgagctcccgggcgcggttcacgt 203
            | |||||||||||||||||||||||||||||||||||
Sbjct: 1681 gaggggtcgacgccgagctcccgggcgcggttcacgt 1645
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>dbj|AK104793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F10, full
            insert sequence
          Length = 1910

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 107  gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
            |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 1741 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 1682

                                                 
Query: 167  gcggggtcgacgccgagctcccgggcgcggttcacgt 203
            | |||||||||||||||||||||||||||||||||||
Sbjct: 1681 gaggggtcgacgccgagctcccgggcgcggttcacgt 1645
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>dbj|AK098925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P22, full
            insert sequence
          Length = 1934

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 107  gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
            |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 1742 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 1683

                                                 
Query: 167  gcggggtcgacgccgagctcccgggcgcggttcacgt 203
            | |||||||||||||||||||||||||||||||||||
Sbjct: 1682 gaggggtcgacgccgagctcccgggcgcggttcacgt 1646
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>dbj|AK064950.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P22, full
            insert sequence
          Length = 1964

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 107  gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
            |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 1741 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 1682

                                                 
Query: 167  gcggggtcgacgccgagctcccgggcgcggttcacgt 203
            | |||||||||||||||||||||||||||||||||||
Sbjct: 1681 gaggggtcgacgccgagctcccgggcgcggttcacgt 1645
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                          
Query: 107    gaggggctggcgacggcgcagttgccatacgccatgctccggccgacgtccgccggcgcg 166
              |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| 
Sbjct: 121896 gaggggctcgcgacggcgcagttcccgtacgccatgctccggccgacgtccaccggcgcc 121837

                                                   
Query: 167    gcggggtcgacgccgagctcccgggcgcggttcacgt 203
              | |||||||||||||||||||||||||||||||||||
Sbjct: 121836 gaggggtcgacgccgagctcccgggcgcggttcacgt 121800
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 162    gcgcggcggggtcgacgccgag 183
              ||||||||||||||||||||||
Sbjct: 408676 gcgcggcggggtcgacgccgag 408697
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>emb|X62666.1|PAXCPSP Pseudomonas aeruginosa genes xcpR, xcpS, xcpT, xcpU, xcpV, xcpW and
            xcpX for secretion proteins
          Length = 5940

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 160  cggcgcggcggggtcgacgccgagc 184
            |||||||||||| ||||||||||||
Sbjct: 1366 cggcgcggcgggatcgacgccgagc 1342
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>gb|AC099781.2| Homo sapiens chromosome 3 clone RP11-791E14, complete sequence
          Length = 200704

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 45     ttgtttgttggttggtttcta 65
              |||||||||||||||||||||
Sbjct: 149680 ttgtttgttggttggtttcta 149660
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>gb|AE004734.1| Pseudomonas aeruginosa PAO1, section 295 of 529 of the complete
            genome
          Length = 11120

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 160  cggcgcggcggggtcgacgccgagc 184
            |||||||||||| ||||||||||||
Sbjct: 6880 cggcgcggcgggatcgacgccgagc 6904
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>gb|AC161120.5| Mus musculus BAC clone RP23-84A2 from chromosome 10, complete sequence
          Length = 214638

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     ttgtttgttggttggtttct 64
              ||||||||||||||||||||
Sbjct: 197392 ttgtttgttggttggtttct 197411
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>ref|XM_550056.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2362

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cgacgccgagctcccgggcg 193
            ||||||||||||||||||||
Sbjct: 1199 cgacgccgagctcccgggcg 1180
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>ref|XM_360561.1| Magnaporthe grisea 70-15 predicted protein (MG10873.4) partial mRNA
          Length = 507

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 ccatgctccggccgacgtcc 157
           ||||||||||||||||||||
Sbjct: 105 ccatgctccggccgacgtcc 124
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>gb|AY264531.1| Camissonia arenaria trnL gene, partial sequence; trnL-trnF
           intergenic spacer region, complete sequence; and trnF
           gene, partial sequence; chloroplast genes for
           chloroplast products
          Length = 936

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  aacgaaagaattgtttgttg 54
           ||||||||||||||||||||
Sbjct: 332 aacgaaagaattgtttgttg 351
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>gb|AC159999.6| Mus musculus BAC clone RP23-6P9 from chromosome 10, complete sequence
          Length = 216489

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    ttgtttgttggttggtttct 64
             ||||||||||||||||||||
Sbjct: 31992 ttgtttgttggttggtttct 32011
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>gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosome 19, complete sequence
          Length = 146015

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     gaaagaattgtttgttggtt 57
              ||||||||||||||||||||
Sbjct: 135626 gaaagaattgtttgttggtt 135607
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>gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, complete sequence
          Length = 218747

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     ttgtttgttggttggtttct 64
              ||||||||||||||||||||
Sbjct: 152207 ttgtttgttggttggtttct 152188
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>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence
          Length = 212387

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     gaaagaattgtttgttggtt 57
              ||||||||||||||||||||
Sbjct: 173559 gaaagaattgtttgttggtt 173578
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>gb|AC026898.8| Homo sapiens chromosome 18, clone RP11-767C4, complete sequence
          Length = 187295

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     gaattgtttgttggttggtt 61
              ||||||||||||||||||||
Sbjct: 130976 gaattgtttgttggttggtt 130995
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>emb|AL669857.7| Mouse DNA sequence from clone RP23-291B8 on chromosome 11 Contains a
              ribosomal protein S2 (Rps2) pseudogene, a novel pseudogene,
              the 5' end of the Sgcd gene for sarcoglycan delta
              (dystrophin-associated glycoprotein) and two CpG islands,
              complete sequence
          Length = 201309

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     ttgtttgttggttggtttct 64
              ||||||||||||||||||||
Sbjct: 160806 ttgtttgttggttggtttct 160825
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>gb|AC084262.6| Homo sapiens chromosome 8, clone RP4-676L2, complete sequence
          Length = 127199

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    ttgtttgttggttggtttct 64
             ||||||||||||||||||||
Sbjct: 25112 ttgtttgttggttggtttct 25093
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>gb|AF165142.2| Homo sapiens chromosome 8 clone CTA-392C11 map cen, complete sequence
          Length = 105496

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    ttgtttgttggttggtttct 64
             ||||||||||||||||||||
Sbjct: 58669 ttgtttgttggttggtttct 58688
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>gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 map 1, complete sequence
          Length = 198381

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    ttgtttgttggttggtttct 64
             ||||||||||||||||||||
Sbjct: 41947 ttgtttgttggttggtttct 41928
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>gb|AC105999.4| Homo sapiens chromosome 8, clone CTA-392C11, complete sequence
          Length = 105495

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    ttgtttgttggttggtttct 64
             ||||||||||||||||||||
Sbjct: 46833 ttgtttgttggttggtttct 46814
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>gb|AC091560.6| Homo sapiens chromosome 8, clone RP11-104D16, complete sequence
          Length = 190283

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     ttgtttgttggttggtttct 64
              ||||||||||||||||||||
Sbjct: 180115 ttgtttgttggttggtttct 180134
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 170     gggtcgacgccgagctcccgggcg 193
               ||||||||||||||| ||||||||
Sbjct: 3113911 gggtcgacgccgagcacccgggcg 3113934
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     cgccggcgcggcggggtcga 176
               ||||||||||||||||||||
Sbjct: 7942629 cgccggcgcggcggggtcga 7942648



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     cgacgccgagctcccgggcg 193
               ||||||||||||||||||||
Sbjct: 1977673 cgacgccgagctcccgggcg 1977692
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>gb|AC154840.2| Mus musculus BAC clone RP23-61I7 from chromosome 14, complete sequence
          Length = 195596

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     ttgtttgttggttggtttct 64
              ||||||||||||||||||||
Sbjct: 160385 ttgtttgttggttggtttct 160404
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 160     cggcgcggcggggtcgacgccgag 183
               |||| |||||||||||||||||||
Sbjct: 3710784 cggcccggcggggtcgacgccgag 3710761
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>dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1008C01
          Length = 144141

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   cgccggcgcggcggggtcga 176
             ||||||||||||||||||||
Sbjct: 48941 cgccggcgcggcggggtcga 48960
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>dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443D08
          Length = 146670

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   cgacgccgagctcccgggcg 193
             ||||||||||||||||||||
Sbjct: 40251 cgacgccgagctcccgggcg 40270
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>gb|AC102198.9| Mus musculus chromosome 15, clone RP24-499H13, complete sequence
          Length = 139134

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    ttgtttgttggttggtttct 64
             ||||||||||||||||||||
Sbjct: 79413 ttgtttgttggttggtttct 79394
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>dbj|AK072170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129P20, full
            insert sequence
          Length = 2362

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cgacgccgagctcccgggcg 193
            ||||||||||||||||||||
Sbjct: 1199 cgacgccgagctcccgggcg 1180
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>emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chromosome 2, complete
              sequence
          Length = 202474

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     ttgtttgttggttggtttct 64
              ||||||||||||||||||||
Sbjct: 137675 ttgtttgttggttggtttct 137656
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>gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome 13, complete sequence
          Length = 173581

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    ttgtttgttggttggtttct 64
             ||||||||||||||||||||
Sbjct: 60507 ttgtttgttggttggtttct 60488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,529,994
Number of Sequences: 3902068
Number of extensions: 1529994
Number of successful extensions: 114294
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113254
Number of HSP's gapped (non-prelim): 1040
length of query: 204
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 182
effective length of database: 17,147,199,772
effective search space: 3120790358504
effective search space used: 3120790358504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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