ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ103591.1| Oryza sativa (japonica cultivar-group) DT-related... 299 6e-78
2ref|NM_186000.1| Oryza sativa (japonica cultivar-group), mRNA 270 5e-69
3dbj|AK108402.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 3e-52
4gb|AY107813.1| Zea mays PCO123922 mRNA sequence 198 2e-47
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
6dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
7dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
8gb|AY106595.1| Zea mays PCO125917 mRNA sequence 153 9e-34
9gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome... 133 8e-28
10gb|AC125478.14| Medicago truncatula clone mth2-31i19, complete s... 86 2e-13
11ref|NM_129690.3| Arabidopsis thaliana catalytic/ hydrolase/ phos... 50 0.009
12gb|AY133731.1| Arabidopsis thaliana clone U19049 unknown protein... 50 0.009
13gb|AY070081.1| Arabidopsis thaliana unknown protein (At2g41250) ... 50 0.009
14gb|AC005662.3| Arabidopsis thaliana chromosome 2 clone F13H10 ma... 50 0.009
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
16gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.15
17emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.15
18dbj|AB210414.1| Ciona intestinalis mRNA for transcription factor... 44 0.57
19dbj|AK222254.1| Ciona intestinalis cDNA, clone:ciad008k16, full ... 44 0.57
20gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 42 2.3
21gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
22gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
23gb|AC122330.4| Mus musculus BAC clone RP23-342G7 from chromosome... 42 2.3
24emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC... 42 2.3
25gb|AC103367.11| Mus musculus chromosome 18, clone RP24-127F15, c... 42 2.3
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
27dbj|AK069708.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
28emb|CT025538.13| Mouse DNA sequence from clone RP23-386E7 on chr... 42 2.3
29gb|AC158932.5| Mus musculus chromosome 3, clone RP24-338G13, com... 40 9.0
30gb|AC162894.4| Mus musculus chromosome 3, clone RP23-326A24, com... 40 9.0
31emb|AL928544.5| Mouse DNA sequence from clone RP23-358C5 on chro... 40 9.0
32gb|CP000001.1| Bacillus cereus E33L, complete genome 40 9.0
33emb|AL138733.15| Human DNA sequence from clone RP1-297M16 on chr... 40 9.0
34gb|AY302598.1| Drosophila melanogaster ANKTM1 mRNA, complete cds 40 9.0
35emb|AL132909.1|ATT14K23 Arabidopsis thaliana DNA chromosome 3, B... 40 9.0
36gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complet... 40 9.0
37gb|AC010709.4| Drosophila melanogaster 3L BAC RPCI98-18D24 (Rosw... 40 9.0
38gb|AC010114.6| Drosophila melanogaster 3L BAC RP98-10P9 (Roswell... 40 9.0
39ref|NM_140006.1| Drosophila melanogaster Transient receptor pote... 40 9.0
40gb|AC093699.5| Homo sapiens BAC clone RP11-810C20 from 4, comple... 40 9.0
41gb|AC023154.5| Homo sapiens chromosome 4 clone RP11-752D24, comp... 40 9.0
42gb|AC007749.3| Homo sapiens BAC clone RP11-574O16 from 2, comple... 40 9.0
43gb|AC137733.5| Homo sapiens chromosome 8, clone CTD-3061M5, comp... 40 9.0
44gb|AE003554.3| Drosophila melanogaster chromosome 3L, section 31... 40 9.0
45gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, comp... 40 9.0
46dbj|AP006276.1| Homo sapiens genomic DNA, chromosome 8q13.3, clo... 40 9.0 
>gb|DQ103591.1| Oryza sativa (japonica cultivar-group) DT-related protein (Dr1)
           mRNA, complete cds
          Length = 876

 Score =  299 bits (151), Expect = 6e-78
 Identities = 223/247 (90%)
 Strand = Plus / Minus

                                                                       
Query: 411 taaccccgatcctttctgcgacttccttgaaggagtgaacatcactgccccaaagccagg 470
           |||| ||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||
Sbjct: 736 taactccgatcctttctgcgacctccttgaaagagtaaacatcactgccccagagccagg 677

                                                                       
Query: 471 catcgcagcctgcgtccctagctccccacagatcgttccgacggtcgtccccaatatgca 530
           |||| |||||||| ||||| |||||||| ||||| ||||  ||||| || ||||||||||
Sbjct: 676 catcacagcctgcatccctggctccccagagatcattcctgcggtcatcaccaatatgca 617

                                                                       
Query: 531 cagcctcttcaggcttcacatccaacaactcgcaggccttcaggaatattgttgggtttg 590
           |||| ||||||||||||||| | || |||||||| ||||||| |||||||||||||||||
Sbjct: 616 cagcttcttcaggcttcacacctaaaaactcgcaagccttcaagaatattgttgggtttg 557

                                                                       
Query: 591 gcttttctgctgcaacctcagcagatacagcaaccgcatcaaaccagtgatcacaattca 650
           ||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 556 gcttttccgcagcaacctcagcagatacagcaactgcatcaaaccagtgatcacaattca 497

                  
Query: 651 gtgcctg 657
           | |||||
Sbjct: 496 gggcctg 490
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>ref|NM_186000.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 915

 Score =  270 bits (136), Expect = 5e-69
 Identities = 202/224 (90%)
 Strand = Plus / Minus

                                                                       
Query: 434 tccttgaaggagtgaacatcactgccccaaagccaggcatcgcagcctgcgtccctagct 493
           |||||||| |||| ||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct: 818 tccttgaaagagtaaacatcactgccccagagccaggcatcacagcctgcatccctggct 759

                                                                       
Query: 494 ccccacagatcgttccgacggtcgtccccaatatgcacagcctcttcaggcttcacatcc 553
           ||||| ||||| ||||  ||||| || |||||||||||||| ||||||||||||||| | 
Sbjct: 758 ccccagagatcattcctgcggtcatcaccaatatgcacagcttcttcaggcttcacacct 699

                                                                       
Query: 554 aacaactcgcaggccttcaggaatattgttgggtttggcttttctgctgcaacctcagca 613
           || |||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct: 698 aaaaactcgcaagccttcaagaatattgttgggtttggcttttccgcagcaacctcagca 639

                                                       
Query: 614 gatacagcaaccgcatcaaaccagtgatcacaattcagtgcctg 657
           ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 638 gatacagcaactgcatcaaaccagtgatcacaattcagggcctg 595
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>dbj|AK108402.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G05, full
           insert sequence
          Length = 1071

 Score =  214 bits (108), Expect = 3e-52
 Identities = 208/240 (86%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 412 aaccccgatcctttctgcgacttccttgaaggagtgaacatcactgccccaaagccaggc 471
           |||||||||||| ||||| || |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 920 aaccccgatcctctctgcaacctccttgaaagagtgaacatcacttccccatagccaggc 861

                                                                       
Query: 472 atcgcagcctgcgtccctagctccccacagatcgttccgacggtcgtccccaatatgcac 531
           |||||||||||| || ||||||||||| | ||| |||  ||| || || || | ||||||
Sbjct: 860 atcgcagcctgcatctctagctccccatatatcattct-acgatcatcgccgacatgcac 802

                                                                       
Query: 532 agcctcttcaggcttcacatccaacaactcgcaggccttcaggaatattgttgggtttgg 591
            ||||||||||| || ||| | ||  |||| || |||||||| |||||||||||||||||
Sbjct: 801 ggcctcttcaggtttgacacctaaagactcacatgccttcagaaatattgttgggtttgg 742

                                                                       
Query: 592 cttttctgctgcaacctcagcagatacagcaaccgcatcaaaccagtgatcacaattcag 651
           ||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 741 cttttctgcagcaacctcagcagagaccgcaaccgcatcaaaccagtgatcacacttcag 682
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>gb|AY107813.1| Zea mays PCO123922 mRNA sequence
          Length = 730

 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                       
Query: 434 tccttgaaggagtgaacatcactgccccaaagccaggcatcgcagcctgcgtccctagct 493
           ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 606 tccttgaaggagtaaacgtcactgccccaaagccaggcatcgcagcctgcatccctcgct 547

                                                                       
Query: 494 ccccacagatcgttccgacggtcgtccccaatatgcacagcctcttcaggcttcacatcc 553
           ||||| |  ||||||| |||||| || ||||| ||||| || |||||||| |||||  | 
Sbjct: 546 ccccataagtcgttcctacggtcatcaccaatgtgcaccgcttcttcaggtttcactcct 487

                                                                       
Query: 554 aacaactcgcaggccttcaggaatattgttgggtttggcttttctgctgcaacctcagca 613
           | || |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 486 agcagctcgcaggccttcaagaatattgtggggttcggcttttctgctgcaacctcagca 427

                                   
Query: 614 gatacagcaaccgcatcaaaccag 637
           || |||||||| || || ||||||
Sbjct: 426 gacacagcaactgcgtcgaaccag 403
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  188 bits (95), Expect = 2e-44
 Identities = 155/175 (88%)
 Strand = Plus / Plus

                                                                            
Query: 434      tccttgaaggagtgaacatcactgccccaaagccaggcatcgcagcctgcgtccctagct 493
                |||||||| |||| ||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct: 27730472 tccttgaaagagtaaacatcactgccccagagccaggcatcacagcctgcatccctggct 27730531

                                                                            
Query: 494      ccccacagatcgttccgacggtcgtccccaatatgcacagcctcttcaggcttcacatcc 553
                ||||| ||||| ||||  ||||| || |||||||||||||| ||||||||||||||| | 
Sbjct: 27730532 ccccagagatcattcctgcggtcatcaccaatatgcacagcttcttcaggcttcacacct 27730591

                                                                       
Query: 554      aacaactcgcaggccttcaggaatattgttgggtttggcttttctgctgcaacct 608
                || |||||||| ||||||| |||||||||||||||||||||||| || |||||||
Sbjct: 27730592 aaaaactcgcaagccttcaagaatattgttgggtttggcttttccgcagcaacct 27730646



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                     
Query: 605      acctcagcagatacagcaaccgcatcaaaccagtgatcacaattcagtgcctg 657
                |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 27730744 acctcagcagatacagcaactgcatcaaaccagtgatcacaattcagggcctg 27730796
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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496C02
          Length = 148419

 Score =  188 bits (95), Expect = 2e-44
 Identities = 155/175 (88%)
 Strand = Plus / Plus

                                                                         
Query: 434   tccttgaaggagtgaacatcactgccccaaagccaggcatcgcagcctgcgtccctagct 493
             |||||||| |||| ||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct: 22851 tccttgaaagagtaaacatcactgccccagagccaggcatcacagcctgcatccctggct 22910

                                                                         
Query: 494   ccccacagatcgttccgacggtcgtccccaatatgcacagcctcttcaggcttcacatcc 553
             ||||| ||||| ||||  ||||| || |||||||||||||| ||||||||||||||| | 
Sbjct: 22911 ccccagagatcattcctgcggtcatcaccaatatgcacagcttcttcaggcttcacacct 22970

                                                                    
Query: 554   aacaactcgcaggccttcaggaatattgttgggtttggcttttctgctgcaacct 608
             || |||||||| ||||||| |||||||||||||||||||||||| || |||||||
Sbjct: 22971 aaaaactcgcaagccttcaagaatattgttgggtttggcttttccgcagcaacct 23025



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                  
Query: 605   acctcagcagatacagcaaccgcatcaaaccagtgatcacaattcagtgcctg 657
             |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 23123 acctcagcagatacagcaactgcatcaaaccagtgatcacaattcagggcctg 23175
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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1477_F01
          Length = 158792

 Score =  188 bits (95), Expect = 2e-44
 Identities = 155/175 (88%)
 Strand = Plus / Plus

                                                                          
Query: 434    tccttgaaggagtgaacatcactgccccaaagccaggcatcgcagcctgcgtccctagct 493
              |||||||| |||| ||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct: 109574 tccttgaaagagtaaacatcactgccccagagccaggcatcacagcctgcatccctggct 109633

                                                                          
Query: 494    ccccacagatcgttccgacggtcgtccccaatatgcacagcctcttcaggcttcacatcc 553
              ||||| ||||| ||||  ||||| || |||||||||||||| ||||||||||||||| | 
Sbjct: 109634 ccccagagatcattcctgcggtcatcaccaatatgcacagcttcttcaggcttcacacct 109693

                                                                     
Query: 554    aacaactcgcaggccttcaggaatattgttgggtttggcttttctgctgcaacct 608
              || |||||||| ||||||| |||||||||||||||||||||||| || |||||||
Sbjct: 109694 aaaaactcgcaagccttcaagaatattgttgggtttggcttttccgcagcaacct 109748



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                   
Query: 605    acctcagcagatacagcaaccgcatcaaaccagtgatcacaattcagtgcctg 657
              |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 109846 acctcagcagatacagcaactgcatcaaaccagtgatcacaattcagggcctg 109898
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>gb|AY106595.1| Zea mays PCO125917 mRNA sequence
          Length = 521

 Score =  153 bits (77), Expect = 9e-34
 Identities = 182/217 (83%)
 Strand = Plus / Minus

                                                                       
Query: 434 tccttgaaggagtgaacatcactgccccaaagccaggcatcgcagcctgcgtccctagct 493
           |||||||| ||| |||| || |||||||| ||||| |||||||||||||| || || |||
Sbjct: 227 tccttgaaagagcgaacgtcgctgccccagagccaagcatcgcagcctgcatctctcgct 168

                                                                       
Query: 494 ccccacagatcgttccgacggtcgtccccaatatgcacagcctcttcaggcttcacatcc 553
           ||||| | ||| || | ||| ||||| ||||  |||||||| ||||||||||||||  ||
Sbjct: 167 ccccatatatcatttctacgatcgtcgccaacgtgcacagcttcttcaggcttcacgccc 108

                                                                       
Query: 554 aacaactcgcaggccttcaggaatattgttgggtttggcttttctgctgcaacctcagca 613
           |  ||||| |||||||||| ||||||| |||| || ||||| |||||||||||||| |||
Sbjct: 107 agtaactcacaggccttcaagaatattattggattcggcttctctgctgcaacctctgca 48

                                                
Query: 614 gatacagcaaccgcatcaaaccagtgatcacaattca 650
           || || ||||| |||||||||||||| ||||| ||||
Sbjct: 47  gagactgcaactgcatcaaaccagtggtcacatttca 11
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>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0073M15, complete sequence
          Length = 143071

 Score =  133 bits (67), Expect = 8e-28
 Identities = 149/175 (85%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                         
Query: 434   tccttgaaggagtgaacatcactgccccaaagccaggcatcgcagcctgcgtccctagct 493
             |||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct: 49224 tccttgaaagagtgaacatcacttccccatagccaggcatcgcagcctgcatctctagct 49165

                                                                         
Query: 494   ccccacagatcgttccgacggtcgtccccaatatgcacagcctcttcaggcttcacatcc 553
             ||||| | ||| || | ||| || || || | |||||| ||||||||||| || ||| | 
Sbjct: 49164 ccccatatatcatt-ctacgatcatcgccgacatgcacggcctcttcaggtttgacacct 49106

                                                                    
Query: 554   aacaactcgcaggccttcaggaatattgttgggtttggcttttctgctgcaacct 608
             ||  |||| || |||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 49105 aaagactcacatgccttcagaaatattgttgggtttggcttttctgcagcaacct 49051



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                            
Query: 605   acctcagcagatacagcaaccgcatcaaaccagtgatcacaattcag 651
             ||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 48915 acctcagcagagaccgcaaccgcatcaaaccagtgatcacacttcag 48869
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>gb|AC125478.14| Medicago truncatula clone mth2-31i19, complete sequence
          Length = 111256

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 142/175 (81%)
 Strand = Plus / Minus

                                                                         
Query: 434   tccttgaaggagtgaacatcactgccccaaagccaggcatcgcagcctgcgtccctagct 493
             ||||| || |||||||||||||| ||||||||||| ||||| |||||||| || || || 
Sbjct: 19367 tccttaaaagagtgaacatcacttccccaaagccatgcatcacagcctgcatctctggca 19308

                                                                         
Query: 494   ccccacagatcgttccgacggtcgtccccaatatgcacagcctcttcaggcttcacatcc 553
             ||||| | ||| || ||||| || ||||||| ||| ||||| || ||||| || ||||||
Sbjct: 19307 ccccatatatcatttcgacgatcatccccaacatgaacagcatcctcaggttttacatcc 19248

                                                                    
Query: 554   aacaactcgcaggccttcaggaatattgttgggtttggcttttctgctgcaacct 608
             || |  || || || ||||| ||||| ||||| ||||| || |||||| ||||||
Sbjct: 19247 aatagttcacatgctttcagaaatatagttggatttggtttctctgcttcaacct 19193
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>ref|NM_129690.3| Arabidopsis thaliana catalytic/ hydrolase/ phosphoglycolate
           phosphatase AT2G41250 mRNA, complete cds
          Length = 1143

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 452 tcactgccccaaagccaggcatcgcagcctgcgtccctagctccccacagatcgttccga 511
           ||||| ||||| ||||| || || ||||||||||| ||||||||||| | ||| |||| |
Sbjct: 891 tcacttccccagagccaagcgtcacagcctgcgtctctagctccccatacatcattccta 832

                
Query: 512 cggtc 516
           |||||
Sbjct: 831 cggtc 827
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>gb|AY133731.1| Arabidopsis thaliana clone U19049 unknown protein (At2g41250) mRNA,
           complete cds
          Length = 904

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 452 tcactgccccaaagccaggcatcgcagcctgcgtccctagctccccacagatcgttccga 511
           ||||| ||||| ||||| || || ||||||||||| ||||||||||| | ||| |||| |
Sbjct: 824 tcacttccccagagccaagcgtcacagcctgcgtctctagctccccatacatcattccta 765

                
Query: 512 cggtc 516
           |||||
Sbjct: 764 cggtc 760
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>gb|AY070081.1| Arabidopsis thaliana unknown protein (At2g41250) mRNA, complete cds
          Length = 1160

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 452 tcactgccccaaagccaggcatcgcagcctgcgtccctagctccccacagatcgttccga 511
           ||||| ||||| ||||| || || ||||||||||| ||||||||||| | ||| |||| |
Sbjct: 891 tcacttccccagagccaagcgtcacagcctgcgtctctagctccccatacatcattccta 832

                
Query: 512 cggtc 516
           |||||
Sbjct: 831 cggtc 827
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>gb|AC005662.3| Arabidopsis thaliana chromosome 2 clone F13H10 map CIC11C08, complete
             sequence
          Length = 96066

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 452   tcactgccccaaagccaggcatcgcagcctgcgtccctagctccccacagatcgttccga 511
             ||||| ||||| ||||| || || ||||||||||| ||||||||||| | ||| |||| |
Sbjct: 70872 tcacttccccagagccaagcgtcacagcctgcgtctctagctccccatacatcattccta 70813

                  
Query: 512   cggtc 516
             |||||
Sbjct: 70812 cggtc 70808
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 605      acctcagcagatacagcaaccgcatcaaaccagtgatcacaattcag 651
                |||||||||||| ||||||| |||||||| || ||||| || |||||
Sbjct: 21611080 acctcagcagattcagcaactgcatcaaatcaatgatcgcatttcag 21611034
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 605      acctcagcagatacagcaaccgcatcaaaccagtgatcacaattcag 651
                |||||||||||| ||||||| |||||||| || ||||| || |||||
Sbjct: 21539401 acctcagcagattcagcaactgcatcaaatcaatgatcgcatttcag 21539355
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>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 158019

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 605   acctcagcagatacagcaaccgcatcaaaccagtgatcacaattcag 651
             |||||||||||| ||||||| |||||||| || ||||| || |||||
Sbjct: 34809 acctcagcagattcagcaactgcatcaaatcaatgatcgcatttcag 34855
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>dbj|AB210414.1| Ciona intestinalis mRNA for transcription factor protein, complete
            cds, clone: ciem819m22
          Length = 2938

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 536  tcttcaggcttcacatccaaca 557
            ||||||||||||||||||||||
Sbjct: 2368 tcttcaggcttcacatccaaca 2347
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>dbj|AK222254.1| Ciona intestinalis cDNA, clone:ciad008k16, full insert sequence
          Length = 2991

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 536  tcttcaggcttcacatccaaca 557
            ||||||||||||||||||||||
Sbjct: 2367 tcttcaggcttcacatccaaca 2346
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 616     tacagcaaccgcatcaaacca 636
               |||||||||||||||||||||
Sbjct: 1569975 tacagcaaccgcatcaaacca 1569995
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>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06,
             complete sequence
          Length = 136143

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 593   ttttctgctgcaacctcagca 613
             |||||||||||||||||||||
Sbjct: 16682 ttttctgctgcaacctcagca 16702



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 593  ttttctgctgcaacctcagca 613
            |||||||||||||||||||||
Sbjct: 6530 ttttctgctgcaacctcagca 6550
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>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
              complete sequence
          Length = 159932

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 593    ttttctgctgcaacctcagca 613
              |||||||||||||||||||||
Sbjct: 159422 ttttctgctgcaacctcagca 159442
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>gb|AC122330.4| Mus musculus BAC clone RP23-342G7 from chromosome 18, complete sequence
          Length = 194291

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 535    ctcttcaggcttcacatccaa 555
              |||||||||||||||||||||
Sbjct: 185623 ctcttcaggcttcacatccaa 185643
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>emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              5/6
          Length = 263335

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 616    tacagcaaccgcatcaaacca 636
              |||||||||||||||||||||
Sbjct: 209145 tacagcaaccgcatcaaacca 209165
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>gb|AC103367.11| Mus musculus chromosome 18, clone RP24-127F15, complete sequence
          Length = 169521

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 535   ctcttcaggcttcacatccaa 555
             |||||||||||||||||||||
Sbjct: 24627 ctcttcaggcttcacatccaa 24647
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 593      ttttctgctgcaacctcagca 613
                |||||||||||||||||||||
Sbjct: 17639924 ttttctgctgcaacctcagca 17639944



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 593      ttttctgctgcaacctcagca 613
                |||||||||||||||||||||
Sbjct: 17629772 ttttctgctgcaacctcagca 17629792
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>dbj|AK069708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031M23, full
            insert sequence
          Length = 2455

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 593  ttttctgctgcaacctcagca 613
            |||||||||||||||||||||
Sbjct: 1800 ttttctgctgcaacctcagca 1780
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>emb|CT025538.13| Mouse DNA sequence from clone RP23-386E7 on chromosome 14, complete
              sequence
          Length = 206957

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 586    gtttggcttttctgctgcaac 606
              |||||||||||||||||||||
Sbjct: 116822 gtttggcttttctgctgcaac 116802
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>gb|AC158932.5| Mus musculus chromosome 3, clone RP24-338G13, complete sequence
          Length = 159429

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   ttccatggaaaatatgtaca 179
             ||||||||||||||||||||
Sbjct: 64684 ttccatggaaaatatgtaca 64665
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>gb|AC162894.4| Mus musculus chromosome 3, clone RP23-326A24, complete sequence
          Length = 187598

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ttccatggaaaatatgtaca 179
              ||||||||||||||||||||
Sbjct: 106299 ttccatggaaaatatgtaca 106280
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>emb|AL928544.5| Mouse DNA sequence from clone RP23-358C5 on chromosome 2, complete
            sequence
          Length = 126329

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 582  ttgggtttggcttttctgctgcaa 605
            ||||||||| ||||||||||||||
Sbjct: 3027 ttgggtttgacttttctgctgcaa 3004
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     gcttccatggaaaatatgta 177
               ||||||||||||||||||||
Sbjct: 3011559 gcttccatggaaaatatgta 3011578
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>emb|AL138733.15| Human DNA sequence from clone RP1-297M16 on chromosome 6 Contains part
             of a novel gene and a novel gene, complete sequence
          Length = 65582

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   cactgccccaaagccaggca 472
             ||||||||||||||||||||
Sbjct: 30842 cactgccccaaagccaggca 30861
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>gb|AY302598.1| Drosophila melanogaster ANKTM1 mRNA, complete cds
          Length = 3594

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 270  ttattgaagctcaggggggctcgg 293
            |||||||||||||||| |||||||
Sbjct: 3584 ttattgaagctcagggcggctcgg 3561
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>emb|AL132909.1|ATT14K23 Arabidopsis thaliana DNA chromosome 3, BAC clone T14K23
          Length = 101786

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   cccagcctttttattgaagc 279
             ||||||||||||||||||||
Sbjct: 67028 cccagcctttttattgaagc 67009
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>gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complete sequence
          Length = 181162

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 394   gttgcccatacccacgctaacccc 417
             ||||||||| ||||||||||||||
Sbjct: 48775 gttgcccatccccacgctaacccc 48752
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>gb|AC010709.4| Drosophila melanogaster 3L BAC RPCI98-18D24 (Roswell Park Cancer
              Institute Drosophila BAC library) complete sequence
          Length = 166520

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    ttattgaagctcaggggggctcgg 293
              |||||||||||||||| |||||||
Sbjct: 126570 ttattgaagctcagggcggctcgg 126593
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>gb|AC010114.6| Drosophila melanogaster 3L BAC RP98-10P9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181726

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 270   ttattgaagctcaggggggctcgg 293
             |||||||||||||||| |||||||
Sbjct: 18863 ttattgaagctcagggcggctcgg 18886
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>ref|NM_140006.1| Drosophila melanogaster Transient receptor potential A1 CG5751-RA
            (TrpA1), mRNA
          Length = 3825

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 270  ttattgaagctcaggggggctcgg 293
            |||||||||||||||| |||||||
Sbjct: 3815 ttattgaagctcagggcggctcgg 3792
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>gb|AC093699.5| Homo sapiens BAC clone RP11-810C20 from 4, complete sequence
          Length = 136898

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 117    aaattaaggcctgtcacaaagagacact 144
              ||||||||  ||||||||||||||||||
Sbjct: 121190 aaattaagaactgtcacaaagagacact 121217
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>gb|AC023154.5| Homo sapiens chromosome 4 clone RP11-752D24, complete sequence
          Length = 187004

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tcgtgaaacacagatttcag 36
             ||||||||||||||||||||
Sbjct: 85100 tcgtgaaacacagatttcag 85081
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>gb|AC007749.3| Homo sapiens BAC clone RP11-574O16 from 2, complete sequence
          Length = 193644

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   acatcactgccccaaagcca 468
             ||||||||||||||||||||
Sbjct: 22173 acatcactgccccaaagcca 22192
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>gb|AC137733.5| Homo sapiens chromosome 8, clone CTD-3061M5, complete sequence
          Length = 28150

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   ttccatggaaaatatgtaca 179
             ||||||||||||||||||||
Sbjct: 22327 ttccatggaaaatatgtaca 22308
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>gb|AE003554.3| Drosophila melanogaster chromosome 3L, section 31 of 83 of the complete
              sequence
          Length = 285158

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    ttattgaagctcaggggggctcgg 293
              |||||||||||||||| |||||||
Sbjct: 277581 ttattgaagctcagggcggctcgg 277604
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>gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, complete sequence
          Length = 235239

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    tgttgctacaatatagacttatag 115
             ||||||||||| ||||||||||||
Sbjct: 65136 tgttgctacaagatagacttatag 65113
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>dbj|AP006276.1| Homo sapiens genomic DNA, chromosome 8q13.3, clone: KB1315B7, complete
              sequence
          Length = 147415

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ttccatggaaaatatgtaca 179
              ||||||||||||||||||||
Sbjct: 146813 ttccatggaaaatatgtaca 146794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,827,816
Number of Sequences: 3902068
Number of extensions: 4827816
Number of successful extensions: 85380
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85182
Number of HSP's gapped (non-prelim): 198
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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