ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24g20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino... 581 e-163
2gb|AY107980.1| Zea mays PCO142484 mRNA sequence 230 4e-57
3dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
4gb|AY104698.1| Zea mays PCO142485 mRNA sequence 216 5e-53
5dbj|AK071182.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
6gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
8ref|NM_189486.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
10dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
11dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
12dbj|AB041032.1| Oryza sativa gene for metallothionein-like prote... 68 3e-08
13gb|BT019074.1| Zea mays clone Contig647.F mRNA sequence 66 1e-07
14gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds 50 0.007
15emb|X94304.1|STPOM14 S.tuberosum mRNA for POM14 protein 48 0.029
16ref|NM_146102.1| Mus musculus expressed sequence AU041783 (AU041... 46 0.11
17gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence 46 0.11
18gb|BC031515.1| Mus musculus expressed sequence AU041783, mRNA (c... 46 0.11
19gb|AC125150.3| Mus musculus BAC clone RP24-354K9 from chromosome... 46 0.11
20gb|AC161518.3| Mus musculus chromosome 19, clone RP24-232M2, com... 46 0.11
21dbj|AK220430.1| Mus musculus mRNA for mKIAA1914 protein 46 0.11
22dbj|AK087449.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 46 0.11
23dbj|AK048649.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 46 0.11
24gb|AY111174.1| Zea mays CL27726_1 mRNA sequence 46 0.11
25emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, co... 44 0.45
26gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 44 0.45
27ref|XM_468423.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.8
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.8
29gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.8
30gb|AY232032.1| Drosophila yakuba clone yak-ad_CG5885 mRNA sequence 42 1.8
31gb|AY950802.1| Bacteriophage SH1, complete genome 42 1.8
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
34dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
35dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
36gb|AY057933.1| Bromus inermis stress-inducible membrane pore pro... 42 1.8
37gb|AC121542.8| Mus musculus chromosome 15, clone RP24-137J5, com... 40 7.0
38gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.0
39gb|AC131999.9| Mus musculus chromosome 15, clone RP24-139E21, co... 40 7.0
40emb|AL034407.1|HS657J8 Human DNA sequence from clone RP4-657J8 o... 40 7.0
41gb|AE005829.1| Caulobacter crescentus CB15 section 155 of 359 of... 40 7.0
42gb|AY249529.1| Rhodococcus ruber aldh6-adh6 operon, complete seq... 40 7.0
43gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.0
44gb|AC093511.4| Homo sapiens chromosome 16 clone CTD-2507C6, comp... 40 7.0
45dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.0 
>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel
           protein
          Length = 674

 Score =  581 bits (293), Expect = e-163
 Identities = 394/428 (92%)
 Strand = Plus / Minus

                                                                       
Query: 86  gctaggtgaggtagttgatgaactcgacggcggtcgcgatggcgcctccggtgatggcgt 145
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 468 gctaggtgaggtagttgatgaactcgacggcggtcgcgatggcacctccggtgatggcgt 409

                                                                       
Query: 146 cctgggcgatcttgttccctttgttgtcgctcgcggcagagatcagggcgccgcttgcga 205
           ||||||||||||||||||||||||||| |||||| ||||||| |||||| ||  |||| |
Sbjct: 408 cctgggcgatcttgttccctttgttgttgctcgcagcagagaccagggcaccagttgcaa 349

                                                                       
Query: 206 tgcctccaatcaacgcgtttttccagtcatactgtccgcggaccctttccactccatact 265
           ||||||| |||||||| ||||||||||||   |  || ||||||||||||||||||||||
Sbjct: 348 tgcctcctatcaacgcatttttccagtcacggtcaccacggaccctttccactccatact 289

                                                                       
Query: 266 ccatgcctacatacactccagcaacagcaccccaatatgcgccctccttgcacattttct 325
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 288 ccatgcctacatacaccccagcaacagcaccccaatatgcaccctccttgcacattttct 229

                                                                       
Query: 326 tcagtgtctgctcgagcttgcgcttcgagacactcccactttggaggcagtcgaaggcgt 385
           |||| ||||  || |||| ||||||||||| |  ||| || |||||||||||||||||||
Sbjct: 228 tcagcgtctcttcaagctggcgcttcgagatatcccctctgtggaggcagtcgaaggcgt 169

                                                                       
Query: 386 cctcggcggccaccctgcaggcgccgacggcgccgatcttgaggaagccgtcgacggtgc 445
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cctcggcgaccaccctgcaggcgccgacggcgccgatcttgaggaagccgtcgacggtgc 109

                                                                       
Query: 446 ggttgagcagcgggttgccgaggtcgatggcgatgtccaccttgctcgaccccgccgnca 505
           ||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||| ||
Sbjct: 108 ggttgagcagcgggttgccgaggtcgatggccacgtccaccttgttcgacccggccgcca 49

                   
Query: 506 gccccgcg 513
           ||||||||
Sbjct: 48  gccccgcg 41



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 12  ggcttcagtcaacaagttcttattcagtcttgtctgata 50
           |||||||||||| ||||||||||||||||||||| ||||
Sbjct: 535 ggcttcagtcaagaagttcttattcagtcttgtccgata 497
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>gb|AY107980.1| Zea mays PCO142484 mRNA sequence
          Length = 690

 Score =  230 bits (116), Expect = 4e-57
 Identities = 302/364 (82%)
 Strand = Plus / Minus

                                                                       
Query: 86  gctaggtgaggtagttgatgaactcgacggcggtcgcgatggcgcctccggtgatggcgt 145
           |||||||||||||||||  |||||||||||| || |||| ||||||  ||||||||||||
Sbjct: 457 gctaggtgaggtagttggcgaactcgacggccgttgcgacggcgccggcggtgatggcgt 398

                                                                       
Query: 146 cctgggcgatcttgttccctttgttgtcgctcgcggcagagatcagggcgccgcttgcga 205
           ||| | |||||||||  || | ||||  ||| ||||| |||| ||| ||||||     | 
Sbjct: 397 ccttgacgatcttgtctccgtggttgctgctggcggcggagaccagcgcgccggacaagg 338

                                                                       
Query: 206 tgcctccaatcaacgcgtttttccagtcatactgtccgcggaccctttccactccatact 265
            |||||| | || |||||| |||||||||    | || |||||||| ||||| |||||| 
Sbjct: 337 cgcctccgaccatcgcgttcttccagtcactgcgcccacggaccctctccacgccataca 278

                                                                       
Query: 266 ccatgcctacatacactccagcaacagcaccccaatatgcgccctccttgcacattttct 325
           ||| ||| || || || ||||||||||  |||||||||||||||||||||||||| ||||
Sbjct: 277 ccacgcccacgtagacgccagcaacagtcccccaatatgcgccctccttgcacatcttct 218

                                                                       
Query: 326 tcagtgtctgctcgagcttgcgcttcgagacactcccactttggaggcagtcgaaggcgt 385
           |||| |  ||||| | ||||||||| || |||  ||| || ||||||||||||||||  |
Sbjct: 217 tcagggcatgctcaaccttgcgctttgaaacatcccccctgtggaggcagtcgaaggtct 158

                                                                       
Query: 386 cctcggcggccaccctgcaggcgccgacggcgccgatcttgaggaagccgtcgacggtgc 445
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cctcggccgccaccttgcaggcgccgacggcgccgatcttgaggaagccgtcgacggtgc 98

               
Query: 446 ggtt 449
           ||||
Sbjct: 97  ggtt 94
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>dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M19, full
           insert sequence
          Length = 697

 Score =  218 bits (110), Expect = 1e-53
 Identities = 197/226 (87%)
 Strand = Plus / Minus

                                                                       
Query: 253 tccactccatactccatgcctacatacactccagcaacagcaccccaatatgcgccctcc 312
           |||||||| ||||||||||| |||||||| |||||||||| ||||||||| || ||||||
Sbjct: 357 tccactccgtactccatgcccacatacaccccagcaacagtaccccaataggcaccctcc 298

                                                                       
Query: 313 ttgcacattttcttcagtgtctgctcgagcttgcgcttcgagacactcccactttggagg 372
           |||||||||||||||||  | ||||| |||||| |||| || |||  ||| || ||||||
Sbjct: 297 ttgcacattttcttcagcatatgctcaagcttgtgctttgaaacatcccctctgtggagg 238

                                                                       
Query: 373 cagtcgaaggcgtcctcggcggccaccctgcaggcgccgacggcgccgatcttgaggaag 432
           |||||||| | |||||||||||| ||| |||| || ||||||||||||||||||||||||
Sbjct: 237 cagtcgaatgtgtcctcggcggcgaccttgcacgccccgacggcgccgatcttgaggaag 178

                                                         
Query: 433 ccgtcgacggtgcggttgagcagcgggttgccgaggtcgatggcga 478
           |||||||||||||||||||| |  ||||| || | |||||||||||
Sbjct: 177 ccgtcgacggtgcggttgaggaaggggttccccatgtcgatggcga 132



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 91  gtgaggtagttgatgaactcgacggcggtcgcgatggcgcctccggtgatggcgtcct 148
           ||||||||||||||||||||||| || || || |  ||||||||||||||||||||||
Sbjct: 519 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 462
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>gb|AY104698.1| Zea mays PCO142485 mRNA sequence
          Length = 678

 Score =  216 bits (109), Expect = 5e-53
 Identities = 184/209 (88%)
 Strand = Plus / Minus

                                                                       
Query: 244 cggaccctttccactccatactccatgcctacatacactccagcaacagcaccccaatat 303
           |||||||||||||| || ||| ||||||| ||||| |||||||||||||  |||||||||
Sbjct: 416 cggaccctttccacgccgtacaccatgcccacataaactccagcaacagtgccccaatat 357

                                                                       
Query: 304 gcgccctccttgcacattttcttcagtgtctgctcgagcttgcgcttcgagacactccca 363
           ||||||||||||||||| ||| |||| |  ||||| | |||| ||||||| |||  ||| 
Sbjct: 356 gcgccctccttgcacatcttcctcagggcatgctcaaccttgtgcttcgaaacatccccc 297

                                                                       
Query: 364 ctttggaggcagtcgaaggcgtcctcggcggccaccctgcaggcgccgacggcgccgatc 423
           || |||||||| |||||||  |||||||| |||||| |||||||||||||||||||||||
Sbjct: 296 ctgtggaggcactcgaaggtctcctcggcagccaccttgcaggcgccgacggcgccgatc 237

                                        
Query: 424 ttgaggaagccgtcgacggtgcggttgag 452
           |||||||||||||||||||||||||||||
Sbjct: 236 ttgaggaagccgtcgacggtgcggttgag 208



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 84  cggctaggtgaggtagttgatgaactcgacggcggtcgcgatggcgcctccggtgatggc 143
           ||||||||| | | ||||||||||||||||||| || ||||  |||||  ||||||||||
Sbjct: 576 cggctaggtaatgcagttgatgaactcgacggctgtggcgaccgcgccggcggtgatggc 517

                
Query: 144 gtcct 148
           |||||
Sbjct: 516 gtcct 512
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>dbj|AK071182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082P21, full
           insert sequence
          Length = 784

 Score =  101 bits (51), Expect = 2e-18
 Identities = 159/195 (81%)
 Strand = Plus / Minus

                                                                       
Query: 258 tccatactccatgcctacatacactccagcaacagcaccccaatatgcgccctccttgca 317
           ||||||||||||||| ||||| || || |||| || ||||||||||||||| ||||||||
Sbjct: 305 tccatactccatgcccacatatacacccgcaatagtaccccaatatgcgccttccttgca 246

                                                                       
Query: 318 cattttcttcagtgtctgctcgagcttgcgcttcgagacactcccactttggaggcagtc 377
            |||||||| ||||    ||| |  ||| |||| |||||   ||| || || ||||| ||
Sbjct: 245 aattttcttgagtgcactctcaactttgtgctttgagacgtcccctctgtgaaggcactc 186

                                                                       
Query: 378 gaaggcgtcctcggcggccaccctgcaggcgccgacggcgccgatcttgaggaagccgtc 437
           |||||  || ||||| || ||| |||| || || || ||||| |||||||||||||||||
Sbjct: 185 gaaggtctcttcggcagcgaccttgcaagccccaacagcgccaatcttgaggaagccgtc 126

                          
Query: 438 gacggtgcggttgag 452
           |||||||||||||||
Sbjct: 125 gacggtgcggttgag 111
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>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                         
Query: 412   acggcgccgatcttgaggaagccgtcgacggtgcggttgagcagcgggttgccgaggtcg 471
             ||||||||||||||||||||||||||||||||||||||||| |  ||||| || | ||||
Sbjct: 86591 acggcgccgatcttgaggaagccgtcgacggtgcggttgaggaaggggttccccatgtcg 86532

                    
Query: 472   atggcga 478
             |||||||
Sbjct: 86531 atggcga 86525



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 91    gtgaggtagttgatgaactcgacggcggtcgcgatggcgcctccggtgatggcgtcct 148
             ||||||||||||||||||||||| || || || |  ||||||||||||||||||||||
Sbjct: 89062 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 89005



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 253   tccactccatactccatgcctacatacactccagcaacag 292
             |||||||| ||||||||||| |||||||| ||||||||||
Sbjct: 88121 tccactccgtactccatgcccacatacaccccagcaacag 88082



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 294   accccaatatgcgccctccttgcacattttcttcag 329
             ||||||||| || |||||||||||||||||||||||
Sbjct: 87944 accccaataggcaccctccttgcacattttcttcag 87909



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 367   tggaggcagtcgaaggcgtcctcggcggccaccctgcaggcgccgac 413
             |||||||||||||| | |||||||||||| ||| |||| || |||||
Sbjct: 86730 tggaggcagtcgaatgtgtcctcggcggcgaccttgcacgccccgac 86684
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                          
Query: 412    acggcgccgatcttgaggaagccgtcgacggtgcggttgagcagcgggttgccgaggtcg 471
              ||||||||||||||||||||||||||||||||||||||||| |  ||||| || | ||||
Sbjct: 569192 acggcgccgatcttgaggaagccgtcgacggtgcggttgaggaaggggttccccatgtcg 569133

                     
Query: 472    atggcga 478
              |||||||
Sbjct: 569132 atggcga 569126



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                        
Query: 91     gtgaggtagttgatgaactcgacggcggtcgcgatggcgcctccggtgatggcgtcct 148
              ||||||||||||||||||||||| || || || |  ||||||||||||||||||||||
Sbjct: 571663 gtgaggtagttgatgaactcgacagctgttgcaacagcgcctccggtgatggcgtcct 571606



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                      
Query: 253    tccactccatactccatgcctacatacactccagcaacag 292
              |||||||| ||||||||||| |||||||| ||||||||||
Sbjct: 570722 tccactccgtactccatgcccacatacaccccagcaacag 570683



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 294    accccaatatgcgccctccttgcacattttcttcag 329
              ||||||||| || |||||||||||||||||||||||
Sbjct: 570545 accccaataggcaccctccttgcacattttcttcag 570510



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 367    tggaggcagtcgaaggcgtcctcggcggccaccctgcaggcgccgac 413
              |||||||||||||| | |||||||||||| ||| |||| || |||||
Sbjct: 569331 tggaggcagtcgaatgtgtcctcggcggcgaccttgcacgccccgac 569285
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>ref|NM_189486.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 255

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 415 gcgccgatcttgaggaagccgtcgacggtgcggttgag 452
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 113 gcgccaatcttgaggaagccgtcgacggtgcggttgag 76
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                      
Query: 415      gcgccgatcttgaggaagccgtcgacggtgcggttgag 452
                ||||| ||||||||||||||||||||||||||||||||
Sbjct: 43036703 gcgccaatcttgaggaagccgtcgacggtgcggttgag 43036666



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 294      accccaatatgcgccctccttgcacattttctt 326
                ||||||||||||||| |||||||| ||||||||
Sbjct: 43037378 accccaatatgcgccttccttgcaaattttctt 43037346
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>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698H10
          Length = 153449

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                    
Query: 415    gcgccgatcttgaggaagccgtcgacggtgcggttgag 452
              ||||| ||||||||||||||||||||||||||||||||
Sbjct: 137582 gcgccaatcttgaggaagccgtcgacggtgcggttgag 137545



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 294    accccaatatgcgccctccttgcacattttctt 326
              ||||||||||||||| |||||||| ||||||||
Sbjct: 138257 accccaatatgcgccttccttgcaaattttctt 138225
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>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0459B04
          Length = 142475

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                   
Query: 415   gcgccgatcttgaggaagccgtcgacggtgcggttgag 452
             ||||| ||||||||||||||||||||||||||||||||
Sbjct: 33732 gcgccaatcttgaggaagccgtcgacggtgcggttgag 33695



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 294   accccaatatgcgccctccttgcacattttctt 326
             ||||||||||||||| |||||||| ||||||||
Sbjct: 34407 accccaatatgcgccttccttgcaaattttctt 34375
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>dbj|AB041032.1| Oryza sativa gene for metallothionein-like protein, complete cds
          Length = 4072

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 415 gcgccgatcttgaggaagccgtcgacggtgcggttgag 452
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 139 gcgccaatcttgaggaagccgtcgacggtgcggttgag 102



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 294 accccaatatgcgccctccttgcacattttctt 326
           ||||||||||||||| |||||||| ||||||||
Sbjct: 815 accccaatatgcgccttccttgcaaattttctt 783
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>gb|BT019074.1| Zea mays clone Contig647.F mRNA sequence
          Length = 774

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                       
Query: 244 cggaccctttccactccatactccatgcctacatacactccagcaacagcaccccaatat 303
           |||||||||||| | || ||| ||||||| ||||| || ||||||||||  |||||||||
Sbjct: 356 cggaccctttcccccccctacaccatgcccacataaaccccagcaacagggccccaatat 415

                            
Query: 304 gcgccctccttgcacat 320
           || ||| ||||||||||
Sbjct: 416 gccccccccttgcacat 432
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>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds
          Length = 777

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 444 gcggttgagcagcgggttgccgaggtcga 472
           ||||||||||||||||| |||||||||||
Sbjct: 626 gcggttgagcagcgggtggccgaggtcga 654
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>emb|X94304.1|STPOM14 S.tuberosum mRNA for POM14 protein
          Length = 537

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 257 ctccatactccatgcctacatacactccagcaacagcaccccaatatgcgccctccttgc 316
           ||||||||||||| ||  |||| || ||||||||||  |||||||| || || || || |
Sbjct: 277 ctccatactccattccagcatataccccagcaacagtcccccaataagcaccttctttac 218

                       
Query: 317 acattttcttca 328
           ||||||||||||
Sbjct: 217 acattttcttca 206
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>ref|NM_146102.1| Mus musculus expressed sequence AU041783 (AU041783), mRNA
          Length = 3581

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 319  attttcttcagtgtctgctcgagcttg 345
            |||||||||||||||||||| ||||||
Sbjct: 2236 attttcttcagtgtctgctccagcttg 2210
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>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence
          Length = 868

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 444 gcggttgagcagcgggttgccgaggtc 470
           ||||||||||||||||| |||||||||
Sbjct: 196 gcggttgagcagcgggtggccgaggtc 170
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>gb|BC031515.1| Mus musculus expressed sequence AU041783, mRNA (cDNA clone MGC:28084
            IMAGE:3711746), complete cds
          Length = 3581

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 319  attttcttcagtgtctgctcgagcttg 345
            |||||||||||||||||||| ||||||
Sbjct: 2236 attttcttcagtgtctgctccagcttg 2210
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>gb|AC125150.3| Mus musculus BAC clone RP24-354K9 from chromosome 19, complete sequence
          Length = 154390

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 319   attttcttcagtgtctgctcgagcttg 345
             |||||||||||||||||||| ||||||
Sbjct: 66145 attttcttcagtgtctgctccagcttg 66171
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>gb|AC161518.3| Mus musculus chromosome 19, clone RP24-232M2, complete sequence
          Length = 176356

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 319    attttcttcagtgtctgctcgagcttg 345
              |||||||||||||||||||| ||||||
Sbjct: 146435 attttcttcagtgtctgctccagcttg 146409
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>dbj|AK220430.1| Mus musculus mRNA for mKIAA1914 protein
          Length = 3532

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 319  attttcttcagtgtctgctcgagcttg 345
            |||||||||||||||||||| ||||||
Sbjct: 2203 attttcttcagtgtctgctccagcttg 2177
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>dbj|AK087449.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130120P06 product:similar to CDNA
            FLJ14564 FIS, CLONE NT2RM4000229, WEAKLY SIMILAR TO
            GALLUS GALLUS ACTIN FILAMENT-ASSOCIATED PROTEIN
            (AFAP-110) MRNA (FRAGMENT) [Homo sapiens], full insert
            sequence
          Length = 3600

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 319  attttcttcagtgtctgctcgagcttg 345
            |||||||||||||||||||| ||||||
Sbjct: 2271 attttcttcagtgtctgctccagcttg 2245
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>dbj|AK048649.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130093H02 product:similar to CDNA
            FLJ14564 FIS, CLONE NT2RM4000229, WEAKLY SIMILAR TO
            GALLUS GALLUS ACTIN FILAMENT-ASSOCIATED PROTEIN
            (AFAP-110) MRNA (FRAGMENT) [Homo sapiens], full insert
            sequence
          Length = 3669

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 319  attttcttcagtgtctgctcgagcttg 345
            |||||||||||||||||||| ||||||
Sbjct: 2340 attttcttcagtgtctgctccagcttg 2314
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>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence
          Length = 802

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 444 gcggttgagcagcgggttgccgaggtc 470
           ||||||||||||||||| |||||||||
Sbjct: 622 gcggttgagcagcgggtggccgaggtc 648
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>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             1/8
          Length = 348517

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 446   ggttgagcagcgggttgccgaggtcg 471
             |||||||||||||||||||| |||||
Sbjct: 48072 ggttgagcagcgggttgccggggtcg 48097
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 108    ctcgacggcggtcgcgatggcg 129
              ||||||||||||||||||||||
Sbjct: 232769 ctcgacggcggtcgcgatggcg 232790
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>ref|XM_468423.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 408 gccgacggcgccgatcttgag 428
           |||||||||||||||||||||
Sbjct: 684 gccgacggcgccgatcttgag 664
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 444      gcggttgagcagcgggttgccgaggtcga 472
                ||||||||| ||||||| |||||||||||
Sbjct: 10820550 gcggttgaggagcgggtggccgaggtcga 10820522
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>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 444   gcggttgagcagcgggttgccgaggtcga 472
             ||||||||| ||||||| |||||||||||
Sbjct: 34337 gcggttgaggagcgggtggccgaggtcga 34365
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>gb|AY232032.1| Drosophila yakuba clone yak-ad_CG5885 mRNA sequence
          Length = 540

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 189 cagggcgccgcttgcgatgcc 209
           |||||||||||||||||||||
Sbjct: 540 cagggcgccgcttgcgatgcc 520
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>gb|AY950802.1| Bacteriophage SH1, complete genome
          Length = 30889

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   agtcgaaggcgtcctcggcgg 394
             |||||||||||||||||||||
Sbjct: 13889 agtcgaaggcgtcctcggcgg 13869
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 444      gcggttgagcagcgggttgccgaggtcga 472
                ||||||||| ||||||| |||||||||||
Sbjct: 10818651 gcggttgaggagcgggtggccgaggtcga 10818623
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 408      gccgacggcgccgatcttgag 428
                |||||||||||||||||||||
Sbjct: 35153100 gccgacggcgccgatcttgag 35153080
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>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1202_E07
          Length = 145014

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 408   gccgacggcgccgatcttgag 428
             |||||||||||||||||||||
Sbjct: 48456 gccgacggcgccgatcttgag 48436
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>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full
           insert sequence
          Length = 839

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 444 gcggttgagcagcgggttgccgaggtcga 472
           ||||||||| ||||||| |||||||||||
Sbjct: 206 gcggttgaggagcgggtggccgaggtcga 178
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>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA,
           complete cds
          Length = 819

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 444 gcggttgagcagcgggttgccgaggtcga 472
           ||||||||| ||||||| |||||||||||
Sbjct: 169 gcggttgaggagcgggtggccgaggtcga 141
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>gb|AC121542.8| Mus musculus chromosome 15, clone RP24-137J5, complete sequence
          Length = 164489

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    gtttttccagtcatactgtc 241
              ||||||||||||||||||||
Sbjct: 106665 gtttttccagtcatactgtc 106646
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 125     tggcgcctccggtgatggcg 144
               ||||||||||||||||||||
Sbjct: 5132880 tggcgcctccggtgatggcg 5132899
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>gb|AC131999.9| Mus musculus chromosome 15, clone RP24-139E21, complete sequence
          Length = 214392

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    gtttttccagtcatactgtc 241
              ||||||||||||||||||||
Sbjct: 187678 gtttttccagtcatactgtc 187697
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>emb|AL034407.1|HS657J8 Human DNA sequence from clone RP4-657J8 on chromosome Xq26.1-26.3,
            complete sequence
          Length = 98954

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  ggaccctttccactccatac 264
            ||||||||||||||||||||
Sbjct: 2190 ggaccctttccactccatac 2171
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>gb|AE005829.1| Caulobacter crescentus CB15 section 155 of 359 of the complete genome
          Length = 11420

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 463  ccgaggtcgatggcgatgtc 482
            ||||||||||||||||||||
Sbjct: 3137 ccgaggtcgatggcgatgtc 3118
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>gb|AY249529.1| Rhodococcus ruber aldh6-adh6 operon, complete sequence
          Length = 2791

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 tcgacggcggtcgcgatggc 128
           ||||||||||||||||||||
Sbjct: 392 tcgacggcggtcgcgatggc 373
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    tcgaaggcgtcctcggcggccacc 399
              ||||||||| ||||||||||||||
Sbjct: 861783 tcgaaggcgacctcggcggccacc 861806
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>gb|AC093511.4| Homo sapiens chromosome 16 clone CTD-2507C6, complete sequence
          Length = 189250

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 318    cattttcttcagtgtctgctcgagcttg 345
              ||||||||||||||||| ||| ||||||
Sbjct: 111186 cattttcttcagtgtctactctagcttg 111159
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     tgcaggcgccgacggcgccg 420
               ||||||||||||||||||||
Sbjct: 1296840 tgcaggcgccgacggcgccg 1296821


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,676,258
Number of Sequences: 3902068
Number of extensions: 3676258
Number of successful extensions: 79803
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79220
Number of HSP's gapped (non-prelim): 582
length of query: 521
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 498
effective length of database: 17,143,297,704
effective search space: 8537362256592
effective search space used: 8537362256592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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