ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal24g07 |
|---|---|
| Clone Library Name | barley_pub |
>YEBB_ECOLI (P24238) Hypothetical protein yebB| Length = 233 Score = 32.0 bits (71), Expect = 0.36 Identities = 11/33 (33%), Positives = 22/33 (66%) Frame = +1 Query: 4 PQNIRXICHXVHLFIYTYNDTTFINLNYAGQLE 102 P+ I +C+ V+L+++ +ND +N+NY + E Sbjct: 13 PEKINFLCYYVYLYLFQWNDN--VNINYPAEYE 43
>CLCKA_MOUSE (Q9WUB7) Chloride channel protein ClC-Ka (Chloride channel Ka)| (ClC-K1) Length = 687 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Frame = -2 Query: 363 TREGKSWTSLVRYLGCPSARTQTPFSWACGIERMVASSSLGAC----ITIGIMTRCFEAK 196 TRE ++ +V A P SWA G ER + G C +T+ + + Sbjct: 584 TRESQTLVGIVERTHLVQALQTQPASWAPGQERFLQDILAGGCPTQPVTLQLSPETSLYQ 643 Query: 195 AERMLDLLVL 166 A R+ +LL L Sbjct: 644 AHRLFELLTL 653
>PUT2_AGABI (P78568) Delta-1-pyrroline-5-carboxylate dehydrogenase (EC| 1.5.1.12) (P5C dehydrogenase) Length = 546 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = +2 Query: 164 GRTSRSNIRSAFASKQRVM---IPIVIQAPKLEEATIRS--IPHAHEKGVCVRAEGHPRY 328 G R+ +++A A Q + +P +I ++ I+ +PH H + +C EG P Sbjct: 25 GSPERAGLQAALAEMQSQLPFEVPCIINGQEVRTNNIQKQPMPHDHARHLCTFHEGSPEL 84 Query: 329 LTK 337 + K Sbjct: 85 VEK 87
>CN140_PONPY (Q5R498) Protein C14orf140 homolog| Length = 389 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +1 Query: 172 KQVQHPLRFRLKAASHDTNCYTGAQTGGGYHTFYPTRP 285 K+V + LK H +C TG GYH YP P Sbjct: 131 KRVGVDRAYPLKPVVHRKSCSTGEAGTDGYHNVYPRPP 168
>PWP2_NEUCR (Q9C270) Periodic tryptophan protein 2 homolog| Length = 899 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -1 Query: 391 VHIFDVKSDYKRRQELDFFGEISGMSFSPDTDALFVGVWDRT 266 +HI+ V++ + G +S ++F+P+ L G WDRT Sbjct: 449 IHIWSVQTGQLLDRLSGHEGPVSSLAFAPNGGLLVSGSWDRT 490
>Y1070_DEIRA (Q9RVF9) Probable peptidase DR1070 (EC 3.4.21.-)| Length = 199 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +3 Query: 81 ELCRSTREVPVLGRRLTYATPTIRCS*GGGQAGPTSAPLSPQSS 212 ++ RST V+ RR+ P I CS G AGPT +S S Sbjct: 87 QVLRSTGSDKVITRRVRQGLPYIGCSAGSVVAGPTIEAVSLMDS 130
>UVRB_BACHD (Q9K6X9) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 660 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +2 Query: 230 VIQAPKLEEATIRSIPHAHEKGVCVRAEGHPRYLT 334 +++A +LE+ T + HE G C E + R+LT Sbjct: 280 LLEAQRLEQRTRYDLEMIHEMGFCSGIENYSRHLT 314
>MFRP_MOUSE (Q8K480) Membrane frizzled-related protein (Membrane-type| frizzled-related protein) Length = 584 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 187 DVGPACPPPQLHRMVG 140 + GP+CPPP L R VG Sbjct: 29 EAGPSCPPPALQRDVG 44
>SELU_COLP3 (Q488J6) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 372 Score = 28.1 bits (61), Expect = 5.3 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 8/135 (5%) Frame = +2 Query: 2 YPRTSGLYAXLYICLYTHTTIQHLLI*IMQVNSRSSGFGETPNLCHTNHSVQLRGRTS-R 178 YP +G Y L L ++ L + + + + ++G G+TP L H +S+ L G R Sbjct: 129 YPLITGGYKALRQFLLNE--LEQLALHPLTILAGNTGSGKTPFLAHCANSLDLEGAAGHR 186 Query: 179 SNIRSAFASKQRVMIPIVIQAPKLEEATIRSIPHAHEKGVCVRAEGH-------PRYLTK 337 + +F + Q I KL E IR + E+ + + EG P L Sbjct: 187 GSSFGSFVTPQSNQINF---ENKLAEQYIRG-DFSLEQRLVLEDEGRLIGSVHLPESLRN 242 Query: 338 EVQLLPSLVVALHIE 382 + L P +V+ +E Sbjct: 243 AMTLAPLVVIEESLE 257
>A6_DROME (O46341) Protein a6| Length = 409 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 170 TSRSNIRSAFASKQRVMIPIVIQAPKLEEATIRSIPHAHEKGVCV-RAEGHPR 325 +S + +RS + + + + Q+ +EE T+ +P C+ R GHP+ Sbjct: 144 SSTARVRSQLSMRSPPPLAPLTQSETIEEVTVSLVPRTSTTANCLTRVSGHPK 196
>CLPP1_BACHK (Q6HHU9) ATP-dependent Clp protease proteolytic subunit 1 (EC| 3.4.21.92) (Endopeptidase Clp 1) Length = 193 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 130 LMPHQPFGAAEGEDKQVQHPLRFRLKAASHDTNCYTGAQTG 252 +M HQP G A+G+ +++ + R+ HD N +TG Sbjct: 120 IMIHQPLGGAQGQATEIEITAK-RILKLKHDINKMIAEKTG 159
>CLPP1_BACCR (Q81CH1) ATP-dependent Clp protease proteolytic subunit 1 (EC| 3.4.21.92) (Endopeptidase Clp 1) Length = 193 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 130 LMPHQPFGAAEGEDKQVQHPLRFRLKAASHDTNCYTGAQTG 252 +M HQP G A+G+ +++ + R+ HD N +TG Sbjct: 120 IMIHQPLGGAQGQATEIEITAK-RILKLKHDINKMIAEKTG 159
>CLPP1_BACAN (Q81PL4) ATP-dependent Clp protease proteolytic subunit 1 (EC| 3.4.21.92) (Endopeptidase Clp 1) Length = 193 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 130 LMPHQPFGAAEGEDKQVQHPLRFRLKAASHDTNCYTGAQTG 252 +M HQP G A+G+ +++ + R+ HD N +TG Sbjct: 120 IMIHQPLGGAQGQATEIEITAK-RILKLKHDINKMIAEKTG 159
>ATKC_BRAJA (Q89FC4) Potassium-transporting ATPase C chain (EC 3.6.3.12)| (Potassium-translocating ATPase C chain) (ATP phosphohydrolase [potassium-transporting] C chain) (Potassium-binding and translocating subunit C) Length = 201 Score = 28.1 bits (61), Expect = 5.3 Identities = 25/70 (35%), Positives = 32/70 (45%) Frame = +3 Query: 129 TYATPTIRCS*GGGQAGPTSAPLSPQSSES*YQLLYRRPNWRRLPYVLSHTPTKRASVSG 308 T + P + GG GPTS L+ + E +L PN +P L T S SG Sbjct: 84 TVSAPYNAANSGGSNLGPTSKALADRLKEDVDKLKAENPN-AAVPVDLVTT-----SASG 137 Query: 309 LKDIPDISPK 338 L PDISP+ Sbjct: 138 LD--PDISPE 145
>SC6A6_BOVIN (Q9MZ34) Sodium- and chloride-dependent taurine transporter| Length = 620 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = -2 Query: 339 SLVRYLGCPSARTQTPFSWACGIERMVASSSLGACITIGIMTRCFEAKAERMLDL--LVL 166 SLV+Y+ + T +WA G+ +A SS+ C+ + ++ R + + ++ L L+ Sbjct: 523 SLVKYVPLTYNKVYTYPTWAIGLGWCLALSSM-VCVPLVMVIRLAQTEGPFLVRLKYLLT 581 Query: 165 PLSCTEWLVWHK 130 P W V H+ Sbjct: 582 PREPNRWAVEHE 593
>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC| 2.7.13.3) (Mcs4-associated kinase 2) (His-Asp phosphorelay kinase phk1) Length = 2310 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Frame = -2 Query: 222 IMTRCFEAKAE--------RMLDLLVLPLSCTEWLVWHKLGVSPKP-ELLEL 94 ++ R FEA + +LD L LP C E+L+W L V P P ELL L Sbjct: 655 VINRSFEALSSYDIPPLLASLLDAL-LPARCIEFLLWAALLVEPFPFELLRL 705
>Y1491_SYNY3 (P74598) Hypothetical WD-repeat protein sll1491| Length = 348 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 8/36 (22%) Frame = -1 Query: 331 EISGMSFSPDTDALF--------VGVWDRTYGSLLQ 248 ++SG++FSPD + + + +W+R G+L+Q Sbjct: 146 KVSGVAFSPDGETIVSVSGGDRTIRIWERASGNLIQ 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,846,115 Number of Sequences: 219361 Number of extensions: 1365416 Number of successful extensions: 4027 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3921 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4026 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
