ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone O... 151 3e-33
2emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone O... 151 3e-33
3dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 3e-33
4ref|XM_479407.1| Oryza sativa (japonica cultivar-group), mRNA 149 1e-32
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
6dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
7dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
8gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate syn... 123 7e-25
9gb|AY109539.1| Zea mays CL2484_1 mRNA sequence 115 2e-22
10emb|X98541.1|VVGLUSYN1 V.vinifera mRNA for ferredoxin-dependent ... 54 5e-04
11ref|NM_180432.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT... 48 0.033
12ref|NM_120496.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT... 48 0.033
13emb|Y09667.1|ATFDGSYN A.thaliana mRNA for ferredoxin-dependent g... 48 0.033
14emb|AL391716.1|ATF21E1 Arabidopsis thaliana DNA chromosome 5, BA... 48 0.033
15emb|BX833273.1|CNS09Z3E Arabidopsis thaliana Full-length cDNA Co... 48 0.033
16gb|AY189525.1| Arabidopsis thaliana ferredoxin-dependent glutama... 48 0.033
17gb|U39287.1|ATU39287 Arabidopsis thaliana ferredoxin-dependent g... 48 0.033
18gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Can... 46 0.13
19gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq par... 44 0.52
20emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 44 0.52
21emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chr... 44 0.52
22gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, p... 40 8.1
23gb|AY240025.1| Drosophila melanogaster SLC26 membrane transporte... 40 8.1
24emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 40 8.1
25emb|AL353796.16| Human DNA sequence from clone RP11-305E6 on chr... 40 8.1
26gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 8.1
27emb|AL596171.1| Listeria innocua Clip11262 complete genome, segm... 40 8.1
28ref|NM_143553.1| Drosophila melanogaster CG9702-RA (CG9702), mRNA 40 8.1
29gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, comp... 40 8.1
30gb|AY075198.1| Drosophila melanogaster AT13857 full length cDNA 40 8.1
31gb|AC058823.4| Homo sapiens BAC clone RP11-810D13 from 4, comple... 40 8.1
32gb|AC007820.5|AC007820 Drosophila melanogaster, chromosome 3R, r... 40 8.1
33gb|AC008299.5|AC008299 Drosophila melanogaster, chromosome 3R, r... 40 8.1
34gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, com... 40 8.1
35emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 ... 40 8.1
36gb|AE003774.3| Drosophila melanogaster chromosome 3R, section 11... 40 8.1 
>emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog2
          Length = 4120

 Score =  151 bits (76), Expect = 3e-33
 Identities = 148/172 (86%)
 Strand = Plus / Minus

                                                                        
Query: 421  atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480
            ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 3511 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 3452

                                                                        
Query: 481  aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540
            |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 3451 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 3392

                                                                
Query: 541  cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttcaac 592
            ||||||| || |||| |||  | |||||||||  |||||| |||||||||||
Sbjct: 3391 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttcaac 3340



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                              
Query: 53   ccacaggacgggtataaatataagaactaatgtgtccagaacaaaaaata 102
            |||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 3915 ccactggacgggtataaatgtaagaactaatgtgtccagaaccaaaaata 3866



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 263  aagatgccttggacagagcttccacaaaattgcagcctttgg 304
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 3687 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3646



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 170  cctagcgtcagcgaaccaatttacagggg 198
            |||||||||||| ||||||||||||||||
Sbjct: 3790 cctagcgtcagcaaaccaatttacagggg 3762
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>emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog1
          Length = 2851

 Score =  151 bits (76), Expect = 3e-33
 Identities = 148/172 (86%)
 Strand = Plus / Minus

                                                                        
Query: 421  atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480
            ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 2242 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 2183

                                                                        
Query: 481  aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540
            |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 2182 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 2123

                                                                
Query: 541  cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttcaac 592
            ||||||| || |||| |||  | |||||||||  |||||| |||||||||||
Sbjct: 2122 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttcaac 2071



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                              
Query: 53   ccacaggacgggtataaatataagaactaatgtgtccagaacaaaaaata 102
            |||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 2646 ccactggacgggtataaatgtaagaactaatgtgtccagaaccaaaaata 2597



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 263  aagatgccttggacagagcttccacaaaattgcagcctttgg 304
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 2418 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 2377



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 170  cctagcgtcagcgaaccaatttacagggg 198
            |||||||||||| ||||||||||||||||
Sbjct: 2521 cctagcgtcagcaaaccaatttacagggg 2493
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>dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D11, full
            insert sequence
          Length = 3596

 Score =  151 bits (76), Expect = 3e-33
 Identities = 148/172 (86%)
 Strand = Plus / Minus

                                                                        
Query: 421  atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480
            ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 3126 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 3067

                                                                        
Query: 481  aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540
            |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 3066 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 3007

                                                                
Query: 541  cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttcaac 592
            ||||||| || |||| |||  | |||||||||  |||||| |||||||||||
Sbjct: 3006 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttcaac 2955



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                              
Query: 53   ccacaggacgggtataaatataagaactaatgtgtccagaacaaaaaata 102
            |||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 3532 ccactggacgggtataaatgtaagaactaatgtgtccagaaccaaaaata 3483



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 263  aagatgccttggacagagcttccacaaaattgcagcctttgg 304
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 3302 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3261



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 170  cctagcgtcagcgaaccaatttacagggg 198
            |||||||||||| ||||||||||||||||
Sbjct: 3405 cctagcgtcagcaaaccaatttacagggg 3377
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>ref|XM_479407.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4923

 Score =  149 bits (75), Expect = 1e-32
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                        
Query: 422  tcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcaca 481
            |||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| |||||
Sbjct: 4923 tcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcaca 4864

                                                                        
Query: 482  agcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatgc 541
            ||||||||||||||||||||| || ||||| ||||  |||||||||||||||||||||||
Sbjct: 4863 agcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatgc 4804

                                                               
Query: 542  ctcccactcgctcagaattttagcacctttcgtgctgcccgttttttcaac 592
            |||||| || |||| |||  | |||||||||  |||||| |||||||||||
Sbjct: 4803 ctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttcaac 4753
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  145 bits (73), Expect = 2e-31
 Identities = 145/169 (85%)
 Strand = Plus / Plus

                                                                            
Query: 421      atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480
                ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 27669980 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 27670039

                                                                            
Query: 481      aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540
                |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 27670040 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 27670099

                                                                 
Query: 541      cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttc 589
                ||||||| || |||| |||  | |||||||||  |||||| ||||||||
Sbjct: 27670100 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttc 27670148



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                                  
Query: 53       ccacaggacgggtataaatataagaactaatgtgtccagaacaaaaaata 102
                |||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 27669574 ccactggacgggtataaatgtaagaactaatgtgtccagaaccaaaaata 27669623



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 263      aagatgccttggacagagcttccacaaaattgcagcctttgg 304
                |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 27669804 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 27669845



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 170      cctagcgtcagcgaaccaatttacagggg 198
                |||||||||||| ||||||||||||||||
Sbjct: 27669701 cctagcgtcagcaaaccaatttacagggg 27669729
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0047B07
          Length = 157797

 Score =  145 bits (73), Expect = 2e-31
 Identities = 145/169 (85%)
 Strand = Plus / Plus

                                                                          
Query: 421    atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480
              ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 126973 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 127032

                                                                          
Query: 481    aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540
              |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 127033 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 127092

                                                               
Query: 541    cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttc 589
              ||||||| || |||| |||  | |||||||||  |||||| ||||||||
Sbjct: 127093 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttc 127141



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                                
Query: 53     ccacaggacgggtataaatataagaactaatgtgtccagaacaaaaaata 102
              |||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 126567 ccactggacgggtataaatgtaagaactaatgtgtccagaaccaaaaata 126616



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 263    aagatgccttggacagagcttccacaaaattgcagcctttgg 304
              |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 126797 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 126838



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 170    cctagcgtcagcgaaccaatttacagggg 198
              |||||||||||| ||||||||||||||||
Sbjct: 126694 cctagcgtcagcaaaccaatttacagggg 126722
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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1477_F01
          Length = 158792

 Score =  145 bits (73), Expect = 2e-31
 Identities = 145/169 (85%)
 Strand = Plus / Plus

                                                                         
Query: 421   atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 480
             ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 49082 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 49141

                                                                         
Query: 481   aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 540
             |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 49142 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 49201

                                                              
Query: 541   cctcccactcgctcagaattttagcacctttcgtgctgcccgttttttc 589
             ||||||| || |||| |||  | |||||||||  |||||| ||||||||
Sbjct: 49202 cctcccattctctcaaaatcgtggcacctttctcgctgcctgttttttc 49250



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                               
Query: 53    ccacaggacgggtataaatataagaactaatgtgtccagaacaaaaaata 102
             |||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 48676 ccactggacgggtataaatgtaagaactaatgtgtccagaaccaaaaata 48725



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 263   aagatgccttggacagagcttccacaaaattgcagcctttgg 304
             |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 48906 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 48947



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 170   cctagcgtcagcgaaccaatttacagggg 198
             |||||||||||| ||||||||||||||||
Sbjct: 48803 cctagcgtcagcaaaccaatttacagggg 48831
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>gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate synthase mRNA, complete cds
          Length = 5617

 Score =  123 bits (62), Expect = 7e-25
 Identities = 128/150 (85%)
 Strand = Plus / Minus

                                                                        
Query: 449  ttgcctggcaagtactctctcaaactcagcacaagcttcaggagagtcttcttcgctggg 508
            |||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 5151 ttgcttggcaagtactctctcaaactctgcacaagcctcaggcgagtcttcttcactggg 5092

                                                                        
Query: 509  tggcaccaactgccagaagagtggcagatatgcctcccactcgctcagaattttagcacc 568
             || ||||  ||||||||||| |||| ||| |||||||| || |||| |||   |  |||
Sbjct: 5091 cggtaccagttgccagaagagcggcaaataggcctcccattccctcaaaatcgcaatacc 5032

                                          
Query: 569  tttcgtgctgcccgttttttcaacataggc 598
            ||||  ||||||||||||||||||||||||
Sbjct: 5031 tttctcgctgcccgttttttcaacataggc 5002



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 162  ccttgcagcctagcgtcagcgaaccaatttacaggggt 199
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
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>gb|AY109539.1| Zea mays CL2484_1 mRNA sequence
          Length = 5572

 Score =  115 bits (58), Expect = 2e-22
 Identities = 127/150 (84%)
 Strand = Plus / Minus

                                                                        
Query: 449  ttgcctggcaagtactctctcaaactcagcacaagcttcaggagagtcttcttcgctggg 508
            |||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 5151 ttgcttggcaagtactctctcaaactctgcacaagcctcaggcgagtcttcttcactggg 5092

                                                                        
Query: 509  tggcaccaactgccagaagagtggcagatatgcctcccactcgctcagaattttagcacc 568
             || ||||  ||||||||||| |||| ||| |||||||| || |||| |||   |  |||
Sbjct: 5091 cggtaccagttgccagaagagcggcaaataggcctcccattccctcaaaatcgcaatacc 5032

                                          
Query: 569  tttcgtgctgcccgttttttcaacataggc 598
            ||||  |||||||||||| |||||||||||
Sbjct: 5031 tttctcgctgcccgttttatcaacataggc 5002



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 162  ccttgcagcctagcgtcagcgaaccaatttacaggggt 199
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
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>emb|X98541.1|VVGLUSYN1 V.vinifera mRNA for ferredoxin-dependent glutamate synthase (clone
           pGOGAT5)
          Length = 578

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                       
Query: 464 tctctcaaactcagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgcca 523
           |||||||||||| || | |||||| || | |||||| || ||||| || ||||  |||||
Sbjct: 180 tctctcaaactctgcgctagcttctggggtgtcttcctcactgggaggaaccagttgcca 121

                                      
Query: 524 gaagagtggcagatatgcctcccactc 550
           |||||||||||| ||||  ||||||||
Sbjct: 120 gaagagtggcaggtatgtatcccactc 94
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>ref|NM_180432.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT GLUAMATE SYNTHASE 1)
            AT5G04140 (GLU1) transcript variant AT5G04140.2 mRNA,
            complete cds
          Length = 5199

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 475  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 4900 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4841

                
Query: 535  gata 538
            ||||
Sbjct: 4840 gata 4837
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>ref|NM_120496.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT GLUAMATE SYNTHASE 1)
            AT5G04140 (GLU1) transcript variant AT5G04140.1 mRNA,
            complete cds
          Length = 5304

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 475  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 5001 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4942

                
Query: 535  gata 538
            ||||
Sbjct: 4941 gata 4938
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>emb|Y09667.1|ATFDGSYN A.thaliana mRNA for ferredoxin-dependent glutamate synthase
          Length = 5178

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 475  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 4900 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4841

                
Query: 535  gata 538
            ||||
Sbjct: 4840 gata 4837
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>emb|AL391716.1|ATF21E1 Arabidopsis thaliana DNA chromosome 5, BAC clone F21E1 (ESSA project)
          Length = 97451

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 475   cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534
             ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 41686 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 41627

                 
Query: 535   gata 538
             ||||
Sbjct: 41626 gata 41623
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>emb|BX833273.1|CNS09Z3E Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL42ZB10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 946

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 475 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534
           ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 684 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 625

               
Query: 535 gata 538
           ||||
Sbjct: 624 gata 621
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>gb|AY189525.1| Arabidopsis thaliana ferredoxin-dependent glutamate synthase gene,
            complete cds
          Length = 8628

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 475  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 8365 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 8306

                
Query: 535  gata 538
            ||||
Sbjct: 8305 gata 8302
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>gb|U39287.1|ATU39287 Arabidopsis thaliana ferredoxin-dependent glutamate synthase
            precursor (GLU1) mRNA, complete cds
          Length = 5303

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 475  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 534
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 5000 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4941

                
Query: 535  gata 538
            ||||
Sbjct: 4940 gata 4937
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>gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 157448

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 472    actcagcacaagcttcaggagag 494
              |||||||||||||||||||||||
Sbjct: 102896 actcagcacaagcttcaggagag 102918
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>gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq partial sequence
          Length = 645

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 89  cagaacaaaaaatataattaca 110
           ||||||||||||||||||||||
Sbjct: 245 cagaacaaaaaatataattaca 224
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>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 89     cagaacaaaaaatataattaca 110
              ||||||||||||||||||||||
Sbjct: 268710 cagaacaaaaaatataattaca 268689
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>emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chromosome X, complete
            sequence
          Length = 79248

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 61   cgggtataaatataagaactaa 82
            ||||||||||||||||||||||
Sbjct: 7441 cgggtataaatataagaactaa 7420
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>gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, partial cds
          Length = 523

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 agaagatgccttggacagag 280
           ||||||||||||||||||||
Sbjct: 229 agaagatgccttggacagag 248
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>gb|AY240025.1| Drosophila melanogaster SLC26 membrane transporter protein (CG9702)
           mRNA, complete cds
          Length = 2337

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 483 gcttcaggagagtcttcttc 502
           ||||||||||||||||||||
Sbjct: 461 gcttcaggagagtcttcttc 442
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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     tccagaacaaaaaatataat 106
              ||||||||||||||||||||
Sbjct: 127681 tccagaacaaaaaatataat 127700
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>emb|AL353796.16| Human DNA sequence from clone RP11-305E6 on chromosome 10 Contains the
             3' end of a novel gene (DKFZp434I138) (FLJ10486), a novel
             gene and a eukaryotic translation elongation factor 1
             alpha 1 (EEF1A1) pseudogene, complete sequence
          Length = 57316

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ccctcgcatgcctacaccac 56
             ||||||||||||||||||||
Sbjct: 10019 ccctcgcatgcctacaccac 10038
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      gaacaaaaaatataattaca 110
               ||||||||||||||||||||
Sbjct: 3061037 gaacaaaaaatataattaca 3061056
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>emb|AL596171.1| Listeria innocua Clip11262 complete genome, segment 9/12
          Length = 258650

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 467    ctcaaactcagcacaagcttcaggagag 494
              ||||||||||| | ||||||||||||||
Sbjct: 228667 ctcaaactcaggaaaagcttcaggagag 228640
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>ref|NM_143553.1| Drosophila melanogaster CG9702-RA (CG9702), mRNA
          Length = 2318

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 483 gcttcaggagagtcttcttc 502
           ||||||||||||||||||||
Sbjct: 458 gcttcaggagagtcttcttc 439
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>gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, complete sequence
          Length = 163541

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    aaaattgcagcctttggtga 307
              ||||||||||||||||||||
Sbjct: 106966 aaaattgcagcctttggtga 106985
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>gb|AY075198.1| Drosophila melanogaster AT13857 full length cDNA
          Length = 2334

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 483 gcttcaggagagtcttcttc 502
           ||||||||||||||||||||
Sbjct: 458 gcttcaggagagtcttcttc 439
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>gb|AC058823.4| Homo sapiens BAC clone RP11-810D13 from 4, complete sequence
          Length = 144277

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   tggcaagtactctctcaaac 473
             ||||||||||||||||||||
Sbjct: 93156 tggcaagtactctctcaaac 93175
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>gb|AC007820.5|AC007820 Drosophila melanogaster, chromosome 3R, region 99F-99F, BAC clone
             BACR12J15, complete sequence
          Length = 198734

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   gcttcaggagagtcttcttc 502
             ||||||||||||||||||||
Sbjct: 58589 gcttcaggagagtcttcttc 58570
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>gb|AC008299.5|AC008299 Drosophila melanogaster, chromosome 3R, region 99F4-99F11, BAC clone
              BACR48G16, complete sequence
          Length = 173844

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    gcttcaggagagtcttcttc 502
              ||||||||||||||||||||
Sbjct: 150658 gcttcaggagagtcttcttc 150639
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>gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, complete sequence
          Length = 159371

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tttatttatactgtactgaa 24
              ||||||||||||||||||||
Sbjct: 127706 tttatttatactgtactgaa 127725
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>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3,
             complete sequence
          Length = 117153

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 383   ttagctttgatcattttggcgatt 406
             ||||||||||||||||| ||||||
Sbjct: 27297 ttagctttgatcattttcgcgatt 27274
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>gb|AE003774.3| Drosophila melanogaster chromosome 3R, section 112 of 118 of the complete
              sequence
          Length = 239051

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    gcttcaggagagtcttcttc 502
              ||||||||||||||||||||
Sbjct: 148241 gcttcaggagagtcttcttc 148222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,723,296
Number of Sequences: 3902068
Number of extensions: 5723296
Number of successful extensions: 99193
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99046
Number of HSP's gapped (non-prelim): 145
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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