>YDCR_ECOLI (P77730) Hypothetical protein ydcR|
          Length = 468

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 133 ISRPVINNAFSICVVLHSIHIAPLR*FVEGVSLSNWGRFFLFST 2
           +  P+     S+  + H I IAP + F  G    NW RFF F+T
Sbjct: 405 LPEPLDAGELSLAALTHHISIAPGKMFSTG---ENWSRFFRFNT 445

>SYMM_XENLA (Q7T0Z0) Methionyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.10) (Methionine--tRNA ligase 2) (Mitochondrial
           methionine--tRNA ligase) (MtMetRS)
          Length = 562

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 274 EPVRPAHSFRFCHHWCQRTTPHL--*RSRAQKAW 179
           EPV PA   +  HHW +   P L   R R++ +W
Sbjct: 217 EPVHPAPFLKLVHHWLEEELPDLSVSRQRSRLSW 250

>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 134 TTHAPTQASSSPSVIPSFLGTRPSQVWCSSLAPMMTEP 247
           TT AP Q   S +V+P   G  PS      LAP   +P
Sbjct: 96  TTAAPVQVDHSAAVVPIVAGEGPSTAHREELAPPAGQP 133

>PHF1_MOUSE (Q9Z1B8) PHD finger protein 1 (PHF1 protein) (T-complex|
           testis-expressed 3) (Polycomblike 1) (mPCl1)
          Length = 559

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 125 PRNTTHAPTQASSS-PSVIPSFLGTRPSQVWCSSLAP 232
           P+++ H+ T +SSS P++ P F    P    C SL+P
Sbjct: 479 PKSSPHSVTASSSSVPALTPGFSRHSPPSPLCRSLSP 515

>YJDC_MOUSE (Q8K2D3) YjeF domain-containing protein 1|
          Length = 508

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 47  LHESSKG--GDMYRM*DNANGKGIVYYRPRNTTHAPTQASSSPSVIPSFLGTRPSQVWCS 220
           LH++  G  G  Y+M  + NG G V  +P +++ AP        V    +   P Q  CS
Sbjct: 79  LHQTELGPSGVGYQMSISQNGTGKVVKKPASSSSAPQSIPKRTDVKSQDVAISPQQQQCS 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,282,439
Number of Sequences: 219361
Number of extensions: 892845
Number of successful extensions: 2189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2184
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)