ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal23p13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 413 ccatttccttgaccatagccttcgccatgaccctcaccatatcc 456 |||||||||| ||| |||||||||||||| |||||||||||||| Sbjct: 15366390 ccatttccttcaccgtagccttcgccatgcccctcaccatatcc 15366433 Score = 58.0 bits (29), Expect = 3e-05 Identities = 79/96 (82%), Gaps = 6/96 (6%) Strand = Plus / Plus Query: 421 ttgaccatagccttcgccatgaccctcaccatatccggatccttgcccagcaccagttcc 480 |||||||| |||||| ||||| |||||||||||||| || || || ||| |||| Sbjct: 15366344 ttgaccatggccttcaccatgcccctcaccatatcctgagcc------agagccatttcc 15366397 Query: 481 ttgaccatagccttcgccatggccctcaccatatcc 516 || ||| |||||||||||||| |||||||||||||| Sbjct: 15366398 ttcaccgtagccttcgccatgcccctcaccatatcc 15366433 Score = 40.1 bits (20), Expect = 7.9 Identities = 37/43 (86%) Strand = Plus / Plus Query: 537 ttccttgaccataaccttcgccatggccctcgccatatnctga 579 |||||| ||| || ||||||||||| ||||| |||||| |||| Sbjct: 15366394 ttccttcaccgtagccttcgccatgcccctcaccatatcctga 15366436
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 413 ccatttccttgaccatagccttcgccatgaccctcaccatatcc 456 |||||||||| ||| |||||||||||||| |||||||||||||| Sbjct: 15682 ccatttccttcaccgtagccttcgccatgcccctcaccatatcc 15725 Score = 58.0 bits (29), Expect = 3e-05 Identities = 79/96 (82%), Gaps = 6/96 (6%) Strand = Plus / Plus Query: 421 ttgaccatagccttcgccatgaccctcaccatatccggatccttgcccagcaccagttcc 480 |||||||| |||||| ||||| |||||||||||||| || || || ||| |||| Sbjct: 15636 ttgaccatggccttcaccatgcccctcaccatatcctgagcc------agagccatttcc 15689 Query: 481 ttgaccatagccttcgccatggccctcaccatatcc 516 || ||| |||||||||||||| |||||||||||||| Sbjct: 15690 ttcaccgtagccttcgccatgcccctcaccatatcc 15725 Score = 40.1 bits (20), Expect = 7.9 Identities = 37/43 (86%) Strand = Plus / Plus Query: 537 ttccttgaccataaccttcgccatggccctcgccatatnctga 579 |||||| ||| || ||||||||||| ||||| |||||| |||| Sbjct: 15686 ttccttcaccgtagccttcgccatgcccctcaccatatcctga 15728
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0418B08 Length = 165909 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 413 ccatttccttgaccatagccttcgccatgaccctcaccatatcc 456 |||||||||| ||| |||||||||||||| |||||||||||||| Sbjct: 145579 ccatttccttcaccgtagccttcgccatgcccctcaccatatcc 145622 Score = 58.0 bits (29), Expect = 3e-05 Identities = 79/96 (82%), Gaps = 6/96 (6%) Strand = Plus / Plus Query: 421 ttgaccatagccttcgccatgaccctcaccatatccggatccttgcccagcaccagttcc 480 |||||||| |||||| ||||| |||||||||||||| || || || ||| |||| Sbjct: 145533 ttgaccatggccttcaccatgcccctcaccatatcctgagcc------agagccatttcc 145586 Query: 481 ttgaccatagccttcgccatggccctcaccatatcc 516 || ||| |||||||||||||| |||||||||||||| Sbjct: 145587 ttcaccgtagccttcgccatgcccctcaccatatcc 145622 Score = 40.1 bits (20), Expect = 7.9 Identities = 37/43 (86%) Strand = Plus / Plus Query: 537 ttccttgaccataaccttcgccatggccctcgccatatnctga 579 |||||| ||| || ||||||||||| ||||| |||||| |||| Sbjct: 145583 ttccttcaccgtagccttcgccatgcccctcaccatatcctga 145625
>gb|AC160960.5| Mus musculus BAC clone RP24-230O19 from chromosome 13, complete sequence Length = 152915 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 484 accatagccttcgccatggccctcaccat 512 |||||||||||| |||||||||||||||| Sbjct: 84099 accatagccttctccatggccctcaccat 84127 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 424 accatagccttcgccatgaccctcaccat 452 |||||||||||| ||||| |||||||||| Sbjct: 84099 accatagccttctccatggccctcaccat 84127
>gb|AF350269.1|AF350269 Dolomedes tenebrosus fibroin 1 mRNA, partial cds Length = 2565 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 467 ccagcaccagttccttgaccata 489 ||||||||||||||||||||||| Sbjct: 2305 ccagcaccagttccttgaccata 2283 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 531 caccagttccttgaccataacct 553 ||||||||||||||||||||||| Sbjct: 2301 caccagttccttgaccataacct 2279 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 467 ccagcaccagttccttgaccatagcct 493 |||||||||| |||||||||||||||| Sbjct: 268 ccagcaccagctccttgaccatagcct 242
>gb|AC128698.4| Mus musculus BAC clone RP24-127J4 from chromosome 9, complete sequence Length = 148461 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 161 caaaggcacactcacacacata 182 |||||||||||||||||||||| Sbjct: 41454 caaaggcacactcacacacata 41433
>gb|AC154363.2| Mus musculus BAC clone RP23-154K12 from chromosome 13, complete sequence Length = 203241 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 161 caaaggcacactcacacacata 182 |||||||||||||||||||||| Sbjct: 148802 caaaggcacactcacacacata 148823
>gb|AC147286.3| Pan troglodytes BAC clone RP43-75F15 from chromosome 7, complete sequence Length = 167461 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 ccacttcttaatcatttacca 265 ||||||||||||||||||||| Sbjct: 84758 ccacttcttaatcatttacca 84778
>gb|AC005534.2|AC005534 Homo sapiens PAC clone RP5-982E9 from 7q35-q36, complete sequence Length = 158219 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ccacttcttaatcatttacca 265 ||||||||||||||||||||| Sbjct: 54695 ccacttcttaatcatttacca 54675
>gb|AC005393.1|AC005393 Homo sapiens chromosome 19, CIT-HSP BAC 470n8, complete sequence Length = 123814 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 359 cctgaacctgagccttggccatgaccttc 387 ||||||||||||||| |||| |||||||| Sbjct: 105488 cctgaacctgagcctgggccgtgaccttc 105460
>emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathyroid hormone receptor 1, exons 1-13 Length = 31774 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 ccttcgccgtagcccgacccg 313 ||||||||||||||||||||| Sbjct: 30778 ccttcgccgtagcccgacccg 30798
>gb|AF380970.1| Musca domestica microsatellite CA06 sequence Length = 240 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcacactcacacacatagat 185 |||||||||||||||||||| Sbjct: 71 gcacactcacacacatagat 90
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 cggatccttgcccatcacca 535 |||||||||||||||||||| Sbjct: 547764 cggatccttgcccatcacca 547783
>gb|AY162292.2| Aplysia californica capsulin mRNA, complete cds Length = 5513 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 413 ccatttccttgaccatagccttcgccatgacc 444 |||| ||||||||||||||| | ||||||||| Sbjct: 4355 ccatatccttgaccatagccattgccatgacc 4324
>gb|AC108422.10| Mus musculus chromosome 1, clone RP23-438D3, complete sequence Length = 173372 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 atttatttatgagtaattgcatat 27 ||||||||||| |||||||||||| Sbjct: 99293 atttatttatgtgtaattgcatat 99270
>gb|AC130674.7| Mus musculus chromosome 1, clone RP24-98E13, complete sequence Length = 167746 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 263 ccatgtccagatccatacccatatccat 290 |||| |||| |||||||||||||||||| Sbjct: 81207 ccatatccatatccatacccatatccat 81180
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ccagatcctgaacctgagcc 372 |||||||||||||||||||| Sbjct: 4070906 ccagatcctgaacctgagcc 4070887
>emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in linkage group 3, complete sequence Length = 147391 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccaagtgcaagacttgaacc 109 |||||||||||||||||||| Sbjct: 103027 ccaagtgcaagacttgaacc 103008
>gb|AC123876.5| Mus musculus BAC clone RP23-270P19 from chromosome 3, complete sequence Length = 203639 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 cacactcacacacatagatgatgt 190 ||||| |||||||||||||||||| Sbjct: 156054 cacacacacacacatagatgatgt 156031
>gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complete sequence Length = 169723 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 agctagatggcagggttatg 130 |||||||||||||||||||| Sbjct: 70258 agctagatggcagggttatg 70239
>gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, complete sequence Length = 200123 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 agctagatggcagggttatg 130 |||||||||||||||||||| Sbjct: 107719 agctagatggcagggttatg 107738
>gb|AC144389.22| Medicago truncatula clone mth2-25e14, complete sequence Length = 127170 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 atacattctaaagtccaagt 95 |||||||||||||||||||| Sbjct: 82063 atacattctaaagtccaagt 82044
>ref|XM_776447.1| PREDICTED: Strongylocentrotus purpuratus similar to centaurin, beta 2 (LOC576103), mRNA Length = 1578 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 tgcccagcaccagttccttg 483 |||||||||||||||||||| Sbjct: 735 tgcccagcaccagttccttg 754
>ref|NM_135768.2| Drosophila melanogaster CG16972-RA (CG16972), mRNA Length = 5866 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 cttgcccatcaccagttcct 541 |||||||||||||||||||| Sbjct: 4760 cttgcccatcaccagttcct 4741
>gb|AY095039.1| Drosophila melanogaster LD28380 full insert cDNA Length = 5872 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 cttgcccatcaccagttcct 541 |||||||||||||||||||| Sbjct: 4760 cttgcccatcaccagttcct 4741
>gb|AC069575.8| Homo sapiens chromosome 11, clone RP11-771G24, complete sequence Length = 173498 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 aaggcacactcacacacata 182 |||||||||||||||||||| Sbjct: 63765 aaggcacactcacacacata 63746
>gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromosome 7, complete sequence Length = 162801 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 agctagatggcagggttatg 130 |||||||||||||||||||| Sbjct: 126820 agctagatggcagggttatg 126801
>gb|AC019212.4|AC019212 Homo sapiens BAC clone RP11-462H12 from X, complete sequence Length = 213793 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 acctagctagatggcagggt 126 |||||||||||||||||||| Sbjct: 168456 acctagctagatggcagggt 168475
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tttccttgaccatagccttc 435 |||||||||||||||||||| Sbjct: 21955981 tttccttgaccatagccttc 21956000
>gb|AC009200.6|AC009200 Drosophila melanogaster, chromosome 2L, region 34A-34E, BAC clone BACR32O12, complete sequence Length = 77914 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 cttgcccatcaccagttcct 541 |||||||||||||||||||| Sbjct: 34929 cttgcccatcaccagttcct 34910
>gb|AE009705.1| Brucella melitensis 16M chromosome II, section 67 of 107 of the complete sequence Length = 11070 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cggatccttgcccatcacca 535 |||||||||||||||||||| Sbjct: 6475 cggatccttgcccatcacca 6456
>gb|AE004503.1| Pseudomonas aeruginosa PAO1, section 64 of 529 of the complete genome Length = 13197 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 catgaccttcgccgtagccc 307 |||||||||||||||||||| Sbjct: 11169 catgaccttcgccgtagccc 11188
>gb|AY619950.1| Nicotiana tabacum UDP-glucuronate decarboxylase 1 mRNA, complete cds Length = 1279 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 aaccactaccagagccttcaccat 350 |||||| ||||||||||||||||| Sbjct: 67 aaccaccaccagagccttcaccat 90
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cggatccttgcccatcacca 535 |||||||||||||||||||| Sbjct: 669313 cggatccttgcccatcacca 669294
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_H01 Length = 128124 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tttccttgaccatagccttc 435 |||||||||||||||||||| Sbjct: 41730 tttccttgaccatagccttc 41749
>gb|AC119268.12| Mus musculus chromosome 5, clone RP24-324M10, complete sequence Length = 201518 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cacactcacacacatagatg 186 |||||||||||||||||||| Sbjct: 120462 cacactcacacacatagatg 120443
>gb|AE003639.3| Drosophila melanogaster chromosome 2L, section 48 of 83 of the complete sequence Length = 261775 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 cttgcccatcaccagttcct 541 |||||||||||||||||||| Sbjct: 77477 cttgcccatcaccagttcct 77496
>gb|AC163988.2| Mus musculus chromosome 1, clone RP23-464C12, complete sequence Length = 178004 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 atttatttatgagtaattgcatat 27 ||||||||||| |||||||||||| Sbjct: 51153 atttatttatgtgtaattgcatat 51130
>gb|AC174651.2| Mus musculus BAC clone CH25-241D1 from chromosome 6, complete sequence Length = 120448 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caaaggcacactcacacaca 180 |||||||||||||||||||| Sbjct: 7092 caaaggcacactcacacaca 7073
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 cagcaccagttccttgacca 487 |||||||||||||||||||| Sbjct: 61443 cagcaccagttccttgacca 61462
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cggatccttgcccatcacca 535 |||||||||||||||||||| Sbjct: 669301 cggatccttgcccatcacca 669282
>gb|AC153381.2| Mus musculus 6 BAC RP23-397L23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196902 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caaaggcacactcacacaca 180 |||||||||||||||||||| Sbjct: 196160 caaaggcacactcacacaca 196179
>emb|AL133241.3|CNS01DUE Human chromosome 14 DNA sequence BAC C-2560C21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 161234 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 tattaataccgtagtagtcc 246 |||||||||||||||||||| Sbjct: 105641 tattaataccgtagtagtcc 105660
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 507 caccatatccggatccttgcccat 530 |||||| ||||||||||||||||| Sbjct: 994683 caccatctccggatccttgcccat 994660 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,889,259 Number of Sequences: 3902068 Number of extensions: 4889259 Number of successful extensions: 135090 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134708 Number of HSP's gapped (non-prelim): 382 length of query: 582 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 559 effective length of database: 17,143,297,704 effective search space: 9583103416536 effective search space used: 9583103416536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
