ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24e18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481260.1| Oryza sativa (japonica cultivar-group), mRNA 444 e-121
2dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 444 e-121
3gb|AY105494.1| Zea mays PCO138455 mRNA sequence 442 e-121
4gb|AY111642.1| Zea mays CL34420_2 mRNA sequence 252 1e-63
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
6dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
7dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
8ref|XM_480197.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.003
9ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.003
10dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
11dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
12gb|AC122305.4| Mus musculus BAC clone RP23-284E19 from 9, comple... 44 0.66
13gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, com... 44 0.66
14dbj|AK044864.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 44 0.66
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.66
16gb|AC027657.2|AC027657 Oryza sativa (japonica cultivar-group) ch... 44 0.66
17gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, co... 44 0.66
18gb|U64915.1|GMU64915 Glycine max farnesylated protein GMFP4 mRNA... 44 0.66
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.66
20ref|NM_202223.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPL... 42 2.6
21ref|NM_102974.2| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPL... 42 2.6
22ref|NM_001036050.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULT... 42 2.6
23gb|AC123941.3| Mus musculus BAC clone RP23-458G24 from chromosom... 42 2.6
24gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosom... 42 2.6
25dbj|AK221090.1| Arabidopsis thaliana mRNA for hypothetical prote... 42 2.6
26gb|AF334723.1| Arabidopsis thaliana clone C00117 (h) unknown pro... 42 2.6
27gb|AF385687.1|AF385687 Arabidopsis thaliana At1g32400/F5D14_22 m... 42 2.6
28emb|BX814048.1|CNS0ADMF Arabidopsis thaliana Full-length cDNA Co... 42 2.6
29emb|BX817086.1|CNS0ADBV Arabidopsis thaliana Full-length cDNA Co... 42 2.6
30emb|BX816778.1|CNS0AD9Y Arabidopsis thaliana Full-length cDNA Co... 42 2.6
31gb|AY088560.1| Arabidopsis thaliana clone 7849 mRNA, complete se... 42 2.6
32gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thali... 42 2.6
33emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on ch... 42 2.6
34gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, com... 42 2.6
35dbj|AB085684.1| Arabidopsis thaliana TOM2A mRNA for tobamovirus ... 42 2.6
36dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 2.6
37emb|AL844223.9| Mouse DNA sequence from clone RP23-468N9 on chro... 42 2.6 
>ref|XM_481260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1385

 Score =  444 bits (224), Expect = e-121
 Identities = 458/536 (85%)
 Strand = Plus / Minus

                                                                        
Query: 215  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 274
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 1034 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 975

                                                                        
Query: 275  gggttgtaagtaaattggctggtgtccagaccatacttctctcgcatcctttggctccac 334
            || || || || || ||||| |||||||||||||||||||| |||||||| |||||||| 
Sbjct: 974  ggattataggtgaactggcttgtgtccagaccatacttctcacgcatcctctggctccat 915

                                                                        
Query: 335  gcatcatttctgctcgcacgttgatcaagtgttgggacgggaacaccagtagccggagca 394
            ||||| |||||||| || ||||| ||||| ||||  || |||||||||||||| ||| ||
Sbjct: 914  gcatcgtttctgctagcgcgttgctcaagggttgcaacaggaacaccagtagcaggaaca 855

                                                                        
Query: 395  ttctgggaatggatcagaggctgacggatgctagtgcttcgagcagttccaatgatttca 454
            || || ||||| || || ||||| |||||||||||||||| || |||| | ||||| |||
Sbjct: 854  ttttgtgaatgaattagtggctgccggatgctagtgcttctagaagttgcgatgatctca 795

                                                                        
Query: 455  tcatcactgtcatactcagcaggtttgttcattgccctgacaacaagagctaacaagaaa 514
            ||||| |||||||| ||||||||||||||||||||||||||||| || ||||| | ||||
Sbjct: 794  tcatcgctgtcatattcagcaggtttgttcattgccctgacaaccagtgctaaaaggaaa 735

                                                                        
Query: 515  agtaatacctgaaaaattacaacaccaagtgcaacccatcttgcaatcttccagttttct 574
            || |||||||  ||||| |||  |||||| ||||||||||||||||||| ||||||||| 
Sbjct: 734  agcaatacctcgaaaatgacactaccaagagcaacccatcttgcaatctcccagttttcc 675

                                                                        
Query: 575  ttcagaaagtcatacatggcatcaaagttttgtgtcttatccactggaattacgtctttc 634
            || ||||||||||||||  ||||||| || |  ||||| ||||| |||||||||||||||
Sbjct: 674  ttgagaaagtcatacattacatcaaaattctcagtcttgtccaccggaattacgtctttc 615

                                                                        
Query: 635  caactatggtcaaagaatatgaatgcagcacctccagcctcagcaaggattaataatatg 694
            || || | ||| |||||||||||||||||| ||||||||||| ||||||| || ||||||
Sbjct: 614  cagctttcgtcgaagaatatgaatgcagcagctccagcctcaacaaggatcaacaatatg 555

                                                                    
Query: 695  accaagaaagaataacaacacaagcaacatgtattccttgtccctgctccaatgca 750
            ||||||||||  |||||||||||||| || || ||||||||  | |||||||||||
Sbjct: 554  accaagaaagcgtaacaacacaagcagcaggtgttccttgttgcagctccaatgca 499
to top
>dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037J09, full
            insert sequence
          Length = 1385

 Score =  444 bits (224), Expect = e-121
 Identities = 458/536 (85%)
 Strand = Plus / Minus

                                                                        
Query: 215  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 274
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 1034 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 975

                                                                        
Query: 275  gggttgtaagtaaattggctggtgtccagaccatacttctctcgcatcctttggctccac 334
            || || || || || ||||| |||||||||||||||||||| |||||||| |||||||| 
Sbjct: 974  ggattataggtgaactggcttgtgtccagaccatacttctcacgcatcctctggctccat 915

                                                                        
Query: 335  gcatcatttctgctcgcacgttgatcaagtgttgggacgggaacaccagtagccggagca 394
            ||||| |||||||| || ||||| ||||| ||||  || |||||||||||||| ||| ||
Sbjct: 914  gcatcgtttctgctagcgcgttgctcaagggttgcaacaggaacaccagtagcaggaaca 855

                                                                        
Query: 395  ttctgggaatggatcagaggctgacggatgctagtgcttcgagcagttccaatgatttca 454
            || || ||||| || || ||||| |||||||||||||||| || |||| | ||||| |||
Sbjct: 854  ttttgtgaatgaattagtggctgccggatgctagtgcttctagaagttgcgatgatctca 795

                                                                        
Query: 455  tcatcactgtcatactcagcaggtttgttcattgccctgacaacaagagctaacaagaaa 514
            ||||| |||||||| ||||||||||||||||||||||||||||| || ||||| | ||||
Sbjct: 794  tcatcgctgtcatattcagcaggtttgttcattgccctgacaaccagtgctaaaaggaaa 735

                                                                        
Query: 515  agtaatacctgaaaaattacaacaccaagtgcaacccatcttgcaatcttccagttttct 574
            || |||||||  ||||| |||  |||||| ||||||||||||||||||| ||||||||| 
Sbjct: 734  agcaatacctcgaaaatgacactaccaagagcaacccatcttgcaatctcccagttttcc 675

                                                                        
Query: 575  ttcagaaagtcatacatggcatcaaagttttgtgtcttatccactggaattacgtctttc 634
            || ||||||||||||||  ||||||| || |  ||||| ||||| |||||||||||||||
Sbjct: 674  ttgagaaagtcatacattacatcaaaattctcagtcttgtccaccggaattacgtctttc 615

                                                                        
Query: 635  caactatggtcaaagaatatgaatgcagcacctccagcctcagcaaggattaataatatg 694
            || || | ||| |||||||||||||||||| ||||||||||| ||||||| || ||||||
Sbjct: 614  cagctttcgtcgaagaatatgaatgcagcagctccagcctcaacaaggatcaacaatatg 555

                                                                    
Query: 695  accaagaaagaataacaacacaagcaacatgtattccttgtccctgctccaatgca 750
            ||||||||||  |||||||||||||| || || ||||||||  | |||||||||||
Sbjct: 554  accaagaaagcgtaacaacacaagcagcaggtgttccttgttgcagctccaatgca 499
to top
>gb|AY105494.1| Zea mays PCO138455 mRNA sequence
          Length = 1377

 Score =  442 bits (223), Expect = e-121
 Identities = 472/555 (85%)
 Strand = Plus / Minus

                                                                        
Query: 199  tcttcacattacggtgcagcggctcctttcttcagctggaggtgccccattttgctgata 258
            |||||||||||  ||||| || ||||||||||||||  | || || ||||| ||||| ||
Sbjct: 1020 tcttcacattatagtgcatcgactcctttcttcagcctgtggagcgccattctgctggta 961

                                                                        
Query: 259  tcgggttgcatctgatgggttgtaagtaaattggctggtgtccagaccatacttctctcg 318
             | | |||  ||||| |||||||| || || ||||| |||||||||||||||||||||||
Sbjct: 960  cctgcttgggtctgaggggttgtacgtgaactggctcgtgtccagaccatacttctctcg 901

                                                                        
Query: 319  catcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgggacgggaac 378
            ||||||||||||||| ||||||||||| || | ||| ||||| ||||||||||| |||||
Sbjct: 900  catcctttggctccaggcatcatttctacttgaacgctgatcgagtgttgggacaggaac 841

                                                                        
Query: 379  accagtagccggagcattctgggaatggatcagaggctgacggatgctagtgcttcgagc 438
            ||| || |||||  |||| |||| ||||||||  ||||| || ||| ||| ||||||  |
Sbjct: 840  accggtggccggcacattttgggcatggatcaatggctgccgcatggtagggcttcggcc 781

                                                                        
Query: 439  agttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgccctgacaac 498
            | || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 780  aattgcaataatttcatcatcactgtcatactccgcaggtttgttcattgccctgacaac 721

                                                                        
Query: 499  aagagctaacaagaaaagtaatacctgaaaaattacaacaccaagtgcaacccatcttgc 558
             |||||||| |  || || | | ||| |||||  ||||| ||||| ||||||||||||||
Sbjct: 720  cagagctaatagaaagagcactgcctcaaaaacaacaacgccaagagcaacccatcttgc 661

                                                                        
Query: 559  aatcttccagttttctttcagaaagtcatacatggcatcaaagttttgtgtcttatccac 618
            ||||| ||||||||  ||||||||| |||||||  |||||||||| |||||||| |||||
Sbjct: 660  aatctcccagtttttcttcagaaagccatacataacatcaaagttatgtgtcttgtccac 601

                                                                        
Query: 619  tggaattacgtctttccaactatggtcaaagaatatgaatgcagcacctccagcctcagc 678
            ||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| |||||
Sbjct: 600  tggaattacatctttccagctatggtcaaagaaaatgaatgcagcagctccagcttcagc 541

                                                                        
Query: 679  aaggattaataatatgaccaagaaagaataacaacacaagcaacatgtattccttgtccc 738
            |||||| || |||||||||||||| | |||  ||||||| || || || || ||||||||
Sbjct: 540  aaggatcaacaatatgaccaagaaggcatagaaacacaaacagcaggtgtttcttgtccc 481

                           
Query: 739  tgctccaatgcagcc 753
            |||||||||||||||
Sbjct: 480  tgctccaatgcagcc 466
to top
>gb|AY111642.1| Zea mays CL34420_2 mRNA sequence
          Length = 601

 Score =  252 bits (127), Expect = 1e-63
 Identities = 265/311 (85%)
 Strand = Plus / Minus

                                                                       
Query: 199 tcttcacattacggtgcagcggctcctttcttcagctggaggtgccccattttgctgata 258
           |||||||||||  ||||| || ||||||||||||||  | || |  ||||||||||| ||
Sbjct: 399 tcttcacattatagtgcatcgactcctttcttcagcccgtggcgtgccattttgctggta 340

                                                                       
Query: 259 tcgggttgcatctgatgggttgtaagtaaattggctggtgtccagaccatacttctctcg 318
            | | |||  ||||| |||||||| || || ||||| |||||||  | ||||||||||||
Sbjct: 339 cctgcttgggtctgaagggttgtatgtgaactggctcgtgtccactcgatacttctctcg 280

                                                                       
Query: 319 catcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgggacgggaac 378
           ||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 279 catcctttggctccaggcatcatttctacttgcacgttgatcaagtgttgggacaggaac 220

                                                                       
Query: 379 accagtagccggagcattctgggaatggatcagaggctgacggatgctagtgcttcgagc 438
           |||||| || ||| |||| |||| ||||||||| ||||| |||||| ||| ||||||  |
Sbjct: 219 accagtggcaggaacattttgggtatggatcagtggctgccggatggtagggcttcggcc 160

                                                                       
Query: 439 agttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgccctgacaac 498
           | || | || ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 159 aattgctataatttcgtcatcactgtcatactcagcaggtttgttcattgccctgacagc 100

                      
Query: 499 aagagctaaca 509
            ||||||||||
Sbjct: 99  cagagctaaca 89



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 548 acccatcttgcaatcttccagttttctttcagaaagtcatacat 591
           |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 50  acccatcttgcaatctcccagttttccttcagaaagtcatacat 7
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  182 bits (92), Expect = 1e-42
 Identities = 185/216 (85%)
 Strand = Plus / Plus

                                                                            
Query: 310      cttctctcgcatcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgg 369
                |||||| |||||||| |||||||| ||||| |||||||| || ||||| ||||| |||| 
Sbjct: 11049629 cttctcacgcatcctctggctccatgcatcgtttctgctagcgcgttgctcaagggttgc 11049688

                                                                            
Query: 370      gacgggaacaccagtagccggagcattctgggaatggatcagaggctgacggatgctagt 429
                 || |||||||||||||| ||| |||| || ||||| || || ||||| |||||||||||
Sbjct: 11049689 aacaggaacaccagtagcaggaacattttgtgaatgaattagtggctgccggatgctagt 11049748

                                                                            
Query: 430      gcttcgagcagttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgc 489
                ||||| || |||| | ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 11049749 gcttctagaagttgcgatgatctcatcatcgctgtcatattcagcaggtttgttcattgc 11049808

                                                    
Query: 490      cctgacaacaagagctaacaagaaaagtaatacctg 525
                ||||||||| || ||||| | |||||| ||||||||
Sbjct: 11049809 cctgacaaccagtgctaaaaggaaaagcaatacctg 11049844



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                            
Query: 626      acgtctttccaactatggtcaaagaatatgaatgcagcacctccagcctcagcaaggatt 685
                ||||||||||| || | ||| |||||||||||||||||| ||||||||||| ||||||| 
Sbjct: 11054338 acgtctttccagctttcgtcgaagaatatgaatgcagcagctccagcctcaacaaggatc 11054397

                                   
Query: 686      aataatatgaccaagaaag 704
                || ||||||||||||||||
Sbjct: 11054398 aacaatatgaccaagaaag 11054416



 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                            
Query: 538      accaagtgcaacccatcttgcaatcttccagttttctttcagaaagtcatacatggcatc 597
                |||||| ||||||||||||||||||| ||||||||| || ||||||||||||||  ||||
Sbjct: 11054155 accaagagcaacccatcttgcaatctcccagttttccttgagaaagtcatacattacatc 11054214

                                              
Query: 598      aaagttttgtgtcttatccactggaattac 627
                ||| || |  ||||| ||||| ||||||||
Sbjct: 11054215 aaaattctcagtcttgtccaccggaattac 11054244



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 215      cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 274
                |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 11049456 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 11049515

                                                     
Query: 275      gggttgtaagtaaattggctggtgtccagaccatact 311
                || || || || || ||||| ||||||||||||||||
Sbjct: 11049516 ggattataggtgaactggcttgtgtccagaccatact 11049552
to top
>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1446H11
          Length = 135488

 Score =  182 bits (92), Expect = 1e-42
 Identities = 185/216 (85%)
 Strand = Plus / Plus

                                                                         
Query: 310   cttctctcgcatcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgg 369
             |||||| |||||||| |||||||| ||||| |||||||| || ||||| ||||| |||| 
Sbjct: 20235 cttctcacgcatcctctggctccatgcatcgtttctgctagcgcgttgctcaagggttgc 20294

                                                                         
Query: 370   gacgggaacaccagtagccggagcattctgggaatggatcagaggctgacggatgctagt 429
              || |||||||||||||| ||| |||| || ||||| || || ||||| |||||||||||
Sbjct: 20295 aacaggaacaccagtagcaggaacattttgtgaatgaattagtggctgccggatgctagt 20354

                                                                         
Query: 430   gcttcgagcagttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgc 489
             ||||| || |||| | ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 20355 gcttctagaagttgcgatgatctcatcatcgctgtcatattcagcaggtttgttcattgc 20414

                                                 
Query: 490   cctgacaacaagagctaacaagaaaagtaatacctg 525
             ||||||||| || ||||| | |||||| ||||||||
Sbjct: 20415 cctgacaaccagtgctaaaaggaaaagcaatacctg 20450



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                         
Query: 626   acgtctttccaactatggtcaaagaatatgaatgcagcacctccagcctcagcaaggatt 685
             ||||||||||| || | ||| |||||||||||||||||| ||||||||||| ||||||| 
Sbjct: 24944 acgtctttccagctttcgtcgaagaatatgaatgcagcagctccagcctcaacaaggatc 25003

                                
Query: 686   aataatatgaccaagaaag 704
             || ||||||||||||||||
Sbjct: 25004 aacaatatgaccaagaaag 25022



 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                         
Query: 538   accaagtgcaacccatcttgcaatcttccagttttctttcagaaagtcatacatggcatc 597
             |||||| ||||||||||||||||||| ||||||||| || ||||||||||||||  ||||
Sbjct: 24761 accaagagcaacccatcttgcaatctcccagttttccttgagaaagtcatacattacatc 24820

                                           
Query: 598   aaagttttgtgtcttatccactggaattac 627
             ||| || |  ||||| ||||| ||||||||
Sbjct: 24821 aaaattctcagtcttgtccaccggaattac 24850



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 215   cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 274
             |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 20062 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 20121

                                                  
Query: 275   gggttgtaagtaaattggctggtgtccagaccatact 311
             || || || || || ||||| ||||||||||||||||
Sbjct: 20122 ggattataggtgaactggcttgtgtccagaccatact 20158
to top
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0560B10, complete sequence
          Length = 108295

 Score =  182 bits (92), Expect = 1e-42
 Identities = 185/216 (85%)
 Strand = Plus / Plus

                                                                        
Query: 310  cttctctcgcatcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgg 369
            |||||| |||||||| |||||||| ||||| |||||||| || ||||| ||||| |||| 
Sbjct: 8145 cttctcacgcatcctctggctccatgcatcgtttctgctagcgcgttgctcaagggttgc 8204

                                                                        
Query: 370  gacgggaacaccagtagccggagcattctgggaatggatcagaggctgacggatgctagt 429
             || |||||||||||||| ||| |||| || ||||| || || ||||| |||||||||||
Sbjct: 8205 aacaggaacaccagtagcaggaacattttgtgaatgaattagtggctgccggatgctagt 8264

                                                                        
Query: 430  gcttcgagcagttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgc 489
            ||||| || |||| | ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 8265 gcttctagaagttgcgatgatctcatcatcgctgtcatattcagcaggtttgttcattgc 8324

                                                
Query: 490  cctgacaacaagagctaacaagaaaagtaatacctg 525
            ||||||||| || ||||| | |||||| ||||||||
Sbjct: 8325 cctgacaaccagtgctaaaaggaaaagcaatacctg 8360



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                         
Query: 626   acgtctttccaactatggtcaaagaatatgaatgcagcacctccagcctcagcaaggatt 685
             ||||||||||| || | ||| |||||||||||||||||| ||||||||||| ||||||| 
Sbjct: 12854 acgtctttccagctttcgtcgaagaatatgaatgcagcagctccagcctcaacaaggatc 12913

                                
Query: 686   aataatatgaccaagaaag 704
             || ||||||||||||||||
Sbjct: 12914 aacaatatgaccaagaaag 12932



 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                         
Query: 538   accaagtgcaacccatcttgcaatcttccagttttctttcagaaagtcatacatggcatc 597
             |||||| ||||||||||||||||||| ||||||||| || ||||||||||||||  ||||
Sbjct: 12671 accaagagcaacccatcttgcaatctcccagttttccttgagaaagtcatacattacatc 12730

                                           
Query: 598   aaagttttgtgtcttatccactggaattac 627
             ||| || |  ||||| ||||| ||||||||
Sbjct: 12731 aaaattctcagtcttgtccaccggaattac 12760



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                        
Query: 215  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 274
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 7972 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 8031

                                                 
Query: 275  gggttgtaagtaaattggctggtgtccagaccatact 311
            || || || || || ||||| ||||||||||||||||
Sbjct: 8032 ggattataggtgaactggcttgtgtccagaccatact 8068
to top
>ref|XM_480197.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1241

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 295  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 344
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1028 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 979



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 611 ttatccactggaattacgtctttccaactatggtcaaagaatatgaa 657
           ||||| ||||||||||| |||||||| |||||||  ||||| |||||
Sbjct: 727 ttatcaactggaattacatctttccagctatggttgaagaaaatgaa 681
to top
>ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.115 mRNA
          Length = 1341

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 295  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 344
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1031 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 982



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 611 ttatccactggaattacgtctttccaactatggtcaaagaatatgaa 657
           ||||| ||||||||||| |||||||| |||||||  ||||| |||||
Sbjct: 730 ttatcaactggaattacatctttccagctatggttgaagaaaatgaa 684
to top
>dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O03, full
            insert sequence
          Length = 1340

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 295  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 344
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1030 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 981



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 611 ttatccactggaattacgtctttccaactatggtcaaagaatatgaa 657
           ||||| ||||||||||| |||||||| |||||||  ||||| |||||
Sbjct: 729 ttatcaactggaattacatctttccagctatggttgaagaaaatgaa 683
to top
>dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K06, full
            insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 295  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 344
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1029 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 980



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 611 ttatccactggaattacgtctttccaactatggtcaaagaatatgaa 657
           ||||| ||||||||||| |||||||| |||||||  ||||| |||||
Sbjct: 728 ttatcaactggaattacatctttccagctatggttgaagaaaatgaa 682
to top
>gb|AC122305.4| Mus musculus BAC clone RP23-284E19 from 9, complete sequence
          Length = 192434

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 445   aatgatttcatcatcactgtca 466
             ||||||||||||||||||||||
Sbjct: 64763 aatgatttcatcatcactgtca 64784
to top
>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence
          Length = 240406

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 675    cagcaaggattaataatatgac 696
              ||||||||||||||||||||||
Sbjct: 209126 cagcaaggattaataatatgac 209105
to top
>dbj|AK044864.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130008O15
           product:unclassifiable, full insert sequence
          Length = 3740

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 445 aatgatttcatcatcactgtca 466
           ||||||||||||||||||||||
Sbjct: 449 aatgatttcatcatcactgtca 428
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 494      acaacaagagctaacaagaaaagtaa 519
                ||||||| ||||||||||||||||||
Sbjct: 13496473 acaacaaaagctaacaagaaaagtaa 13496448
to top
>gb|AC027657.2|AC027657 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040H08,
             complete sequence
          Length = 125679

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 494   acaacaagagctaacaagaaaagtaa 519
             ||||||| ||||||||||||||||||
Sbjct: 81144 acaacaaaagctaacaagaaaagtaa 81119
to top
>gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, complete sequence
          Length = 190380

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 675   cagcaaggattaataatatgac 696
             ||||||||||||||||||||||
Sbjct: 23695 cagcaaggattaataatatgac 23674
to top
>gb|U64915.1|GMU64915 Glycine max farnesylated protein GMFP4 mRNA, partial cds
          Length = 619

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 329 ctccacgcatcatttctgctcgcacgttgatcaagtgt 366
           ||||| |||||||||||||| | ||| |||||||||||
Sbjct: 210 ctccaagcatcatttctgcttggacgctgatcaagtgt 173
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 494      acaacaagagctaacaagaaaagtaa 519
                ||||||| ||||||||||||||||||
Sbjct: 13503815 acaacaaaagctaacaagaaaagtaa 13503790
to top
>ref|NM_202223.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)
           AT1G32400 (TOM2A) transcript variant AT1G32400.2 mRNA,
           complete cds
          Length = 1501

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 971 ttcatcatcactgtcatactc 951
to top
>ref|NM_102974.2| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)
           AT1G32400 (TOM2A) transcript variant AT1G32400.1 mRNA,
           complete cds
          Length = 1343

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 813 ttcatcatcactgtcatactc 793
to top
>ref|NM_001036050.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) AT1G32400
            (TOM2A) transcript variant AT1G32400.3 mRNA, complete cds
          Length = 1720

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 451  ttcatcatcactgtcatactc 471
            |||||||||||||||||||||
Sbjct: 1189 ttcatcatcactgtcatactc 1169
to top
>gb|AC123941.3| Mus musculus BAC clone RP23-458G24 from chromosome 19, complete sequence
          Length = 182733

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 562    cttccagttttctttcagaaa 582
              |||||||||||||||||||||
Sbjct: 119701 cttccagttttctttcagaaa 119681
to top
>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence
          Length = 181527

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 474    caggtttgttcattgccctga 494
              |||||||||||||||||||||
Sbjct: 177040 caggtttgttcattgccctga 177020
to top
>dbj|AK221090.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-83-F06
          Length = 584

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 44  ttcatcatcactgtcatactc 24
to top
>gb|AF334723.1| Arabidopsis thaliana clone C00117 (h) unknown protein (At1g32400)
           mRNA, complete cds
          Length = 843

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 597 ttcatcatcactgtcatactc 577
to top
>gb|AF385687.1|AF385687 Arabidopsis thaliana At1g32400/F5D14_22 mRNA, complete cds
          Length = 1343

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 813 ttcatcatcactgtcatactc 793
to top
>emb|BX814048.1|CNS0ADMF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB54ZC10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1206

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 714 ttcatcatcactgtcatactc 694
to top
>emb|BX817086.1|CNS0ADBV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH84ZH12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1407

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 974 ttcatcatcactgtcatactc 954
to top
>emb|BX816778.1|CNS0AD9Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH67ZH02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1254

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 759 ttcatcatcactgtcatactc 739
to top
>gb|AY088560.1| Arabidopsis thaliana clone 7849 mRNA, complete sequence
          Length = 1325

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 795 ttcatcatcactgtcatactc 775
to top
>gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 127462

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 451   ttcatcatcactgtcatactc 471
             |||||||||||||||||||||
Sbjct: 51510 ttcatcatcactgtcatactc 51530
to top
>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete
              sequence
          Length = 145652

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 474    caggtttgttcattgccctga 494
              |||||||||||||||||||||
Sbjct: 141165 caggtttgttcattgccctga 141145
to top
>gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, complete sequence
          Length = 190980

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 562   cttccagttttctttcagaaa 582
             |||||||||||||||||||||
Sbjct: 45430 cttccagttttctttcagaaa 45410
to top
>dbj|AB085684.1| Arabidopsis thaliana TOM2A mRNA for tobamovirus multiplication 2A,
           complete cds
          Length = 1293

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 451 ttcatcatcactgtcatactc 471
           |||||||||||||||||||||
Sbjct: 757 ttcatcatcactgtcatactc 737
to top
>dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04I02, TM0021,
             complete sequence
          Length = 83700

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 215   cagcggctcctttcttcagctggaggtgc 243
             ||||| ||||||||||||| |||||||||
Sbjct: 39414 cagcgactcctttcttcagttggaggtgc 39386
to top
>emb|AL844223.9| Mouse DNA sequence from clone RP23-468N9 on chromosome 4, complete
             sequence
          Length = 61897

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 701   aaagaataacaacacaagcaa 721
             |||||||||||||||||||||
Sbjct: 56006 aaagaataacaacacaagcaa 55986


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,767,107
Number of Sequences: 3902068
Number of extensions: 7767107
Number of successful extensions: 156539
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 156332
Number of HSP's gapped (non-prelim): 204
length of query: 753
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 730
effective length of database: 17,143,297,704
effective search space: 12514607323920
effective search space used: 12514607323920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top