| Clone Name | rbaal23p10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY123417.1| Triticum aestivum putative glycine decarboxylase subunit mRNA, complete cds Length = 804 Score = 184 bits (93), Expect = 1e-43 Identities = 146/166 (87%), Gaps = 2/166 (1%) Strand = Plus / Minus Query: 150 gaacgcatggtaaagctggtttaattattgtagataagagtagtcgacatnnnnnnnnca 209 ||||||||||| |||||||||||||||||||||| ||||||||||||||| || Sbjct: 803 gaacgcatggtgaagctggtttaattattgtagacaagagtagtcgacatggttgcaaca 744 Query: 210 aaa--ggaatgataagcgagcaagaaaccctagtgggcgtcctcctcctcgcagngcttg 267 ||| |||| ||||| |||||||| | | ||||||||||||||||||||||||| ||||| Sbjct: 743 aaaaaggaacgataatcgagcaaggagcactagtgggcgtcctcctcctcgcagtgcttg 684 Query: 268 gtgtacttggccgagtccagcaggccctccagctccgcggngctgc 313 |||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 683 gtgtacttggccgagtccagcaggccctccagctccgccgggctgc 638
>ref|NM_197349.1| Oryza sativa (japonica cultivar-group) putative glycine decarboxylase subunit (OSJNBa0076F20.1), mRNA Length = 768 Score = 91.7 bits (46), Expect = 1e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295 ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | | Sbjct: 569 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 510 Query: 296 ccagctccg 304 ||||||||| Sbjct: 509 ccagctccg 501
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 91.7 bits (46), Expect = 1e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295 ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | | Sbjct: 5339 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 5280 Query: 296 ccagctccg 304 ||||||||| Sbjct: 5279 ccagctccg 5271
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 91.7 bits (46), Expect = 1e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295 ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | | Sbjct: 19377473 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 19377414 Query: 296 ccagctccg 304 ||||||||| Sbjct: 19377413 ccagctccg 19377405
>dbj|AK120480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P19, full insert sequence Length = 843 Score = 91.7 bits (46), Expect = 1e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295 ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | | Sbjct: 657 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 598 Query: 296 ccagctccg 304 ||||||||| Sbjct: 597 ccagctccg 589
>dbj|AK104840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F04, full insert sequence Length = 714 Score = 91.7 bits (46), Expect = 1e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295 ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | | Sbjct: 603 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 544 Query: 296 ccagctccg 304 ||||||||| Sbjct: 543 ccagctccg 535
>dbj|AK062851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A03, full insert sequence Length = 751 Score = 91.7 bits (46), Expect = 1e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295 ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | | Sbjct: 616 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 557 Query: 296 ccagctccg 304 ||||||||| Sbjct: 556 ccagctccg 548
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 91.7 bits (46), Expect = 1e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295 ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | | Sbjct: 19388749 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 19388690 Query: 296 ccagctccg 304 ||||||||| Sbjct: 19388689 ccagctccg 19388681
>gb|AF107258.1| Homo sapiens chromosome 21q22.1 PAC 295E05A, complete sequence Length = 154311 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 tttccctgcacatgcttctcttttg 55 |||||||||||| |||||||||||| Sbjct: 149307 tttccctgcacaagcttctcttttg 149283
>gb|AF107257.1| Homo sapiens chromosome 21q22.1 PAC L12209, complete sequence Length = 139851 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 tttccctgcacatgcttctcttttg 55 |||||||||||| |||||||||||| Sbjct: 21121 tttccctgcacaagcttctcttttg 21097
>ref|XM_362103.1| Magnaporthe grisea 70-15 hypothetical protein (MG04548.4) partial cds Length = 1674 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 cagcaggccctccagctccgc 305 ||||||||||||||||||||| Sbjct: 1389 cagcaggccctccagctccgc 1369
>dbj|BS000176.1| Pan troglodytes chromosome 22 clone:RP43-006O21, map 22, complete sequences Length = 146754 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 tttccctgcacatgcttctcttttg 55 |||||||||||| |||||||||||| Sbjct: 21662 tttccctgcacaagcttctcttttg 21638
>dbj|BS000175.1| Pan troglodytes chromosome 22 clone:PTB-091H17, map 22, complete sequences Length = 183155 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 tttccctgcacatgcttctcttttg 55 |||||||||||| |||||||||||| Sbjct: 177202 tttccctgcacaagcttctcttttg 177178
>dbj|AP001706.1| Homo sapiens genomic DNA, chromosome 21q, section 50/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 tttccctgcacatgcttctcttttg 55 |||||||||||| |||||||||||| Sbjct: 210632 tttccctgcacaagcttctcttttg 210608
>dbj|AP000236.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-355D16, complete sequence Length = 159121 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 tttccctgcacatgcttctcttttg 55 |||||||||||| |||||||||||| Sbjct: 30703 tttccctgcacaagcttctcttttg 30679
>dbj|AP000196.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B355D16-T1073, segment 2/8, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 31 tttccctgcacatgcttctcttttg 55 |||||||||||| |||||||||||| Sbjct: 28419 tttccctgcacaagcttctcttttg 28443
>dbj|AP000092.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, B335D16-P10G11 region, segment 2/7 Length = 100000 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 31 tttccctgcacatgcttctcttttg 55 |||||||||||| |||||||||||| Sbjct: 28419 tttccctgcacaagcttctcttttg 28443
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tacacaaacacaagaaaaac 134 |||||||||||||||||||| Sbjct: 709835 tacacaaacacaagaaaaac 709816
>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence Length = 126187 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 atggttactgaaatggtata 77 |||||||||||||||||||| Sbjct: 125594 atggttactgaaatggtata 125575
>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5 Length = 348986 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tggtttaattattgtagata 185 |||||||||||||||||||| Sbjct: 198928 tggtttaattattgtagata 198947
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ttggtgtacttggccgagtc 284 |||||||||||||||||||| Sbjct: 119028 ttggtgtacttggccgagtc 119009
>ref|XM_571991.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 1592 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tacacaaacacaagaaaaac 134 |||||||||||||||||||| Sbjct: 199 tacacaaacacaagaaaaac 218
>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone BACR16C04, complete sequence Length = 159528 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 caaaaggaatgataagcgag 227 |||||||||||||||||||| Sbjct: 27528 caaaaggaatgataagcgag 27547
>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete sequence Length = 217552 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ttgtcatggttactgaaatg 72 |||||||||||||||||||| Sbjct: 77156 ttgtcatggttactgaaatg 77175
>gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq23, complete sequence Length = 129690 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tttccctgcacatgcttctc 50 |||||||||||||||||||| Sbjct: 17108 tttccctgcacatgcttctc 17127
>gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 117 of 118 of the complete sequence Length = 232050 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 caaaaggaatgataagcgag 227 |||||||||||||||||||| Sbjct: 16435 caaaaggaatgataagcgag 16454
>gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p, complete sequence Length = 176223 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggtttaattattgtagataa 186 |||||||||||||||||||| Sbjct: 120000 ggtttaattattgtagataa 120019
>emb|AL445385.4|CNS07ED1 Human chromosome 14 DNA sequence BAC R-126I9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163784 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaacacaagaaaaactggaa 139 |||||||||||||||||||| Sbjct: 110426 aaacacaagaaaaactggaa 110445 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,269,635 Number of Sequences: 3902068 Number of extensions: 3269635 Number of successful extensions: 53231 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53129 Number of HSP's gapped (non-prelim): 102 length of query: 313 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 291 effective length of database: 17,147,199,772 effective search space: 4989835133652 effective search space used: 4989835133652 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)