ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23p10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY123417.1| Triticum aestivum putative glycine decarboxylase ... 184 1e-43
2ref|NM_197349.1| Oryza sativa (japonica cultivar-group) putative... 92 1e-15
3gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 92 1e-15
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
5dbj|AK120480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
6dbj|AK104840.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
7dbj|AK062851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 92 1e-15
9gb|AF107258.1| Homo sapiens chromosome 21q22.1 PAC 295E05A, comp... 42 1.0
10gb|AF107257.1| Homo sapiens chromosome 21q22.1 PAC L12209, compl... 42 1.0
11ref|XM_362103.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.0
12dbj|BS000176.1| Pan troglodytes chromosome 22 clone:RP43-006O21,... 42 1.0
13dbj|BS000175.1| Pan troglodytes chromosome 22 clone:PTB-091H17, ... 42 1.0
14dbj|AP001706.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.0
15dbj|AP000236.2| Homo sapiens genomic DNA, chromosome 21q, clone:... 42 1.0
16dbj|AP000196.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 1.0
17dbj|AP000092.1| Homo sapiens genomic DNA of 21q22.1, GART and AM... 42 1.0
18gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.1
19gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete s... 40 4.1
20emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; se... 40 4.1
21dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 40 4.1
22ref|XM_571991.1| Cryptococcus neoformans var. neoformans JEC21 c... 40 4.1
23gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, r... 40 4.1
24emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on ch... 40 4.1
25gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq2... 40 4.1
26gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 11... 40 4.1
27gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p... 40 4.1
28emb|AL445385.4|CNS07ED1 Human chromosome 14 DNA sequence BAC R-1... 40 4.1

>gb|AY123417.1| Triticum aestivum putative glycine decarboxylase subunit mRNA,
           complete cds
          Length = 804

 Score =  184 bits (93), Expect = 1e-43
 Identities = 146/166 (87%), Gaps = 2/166 (1%)
 Strand = Plus / Minus

                                                                       
Query: 150 gaacgcatggtaaagctggtttaattattgtagataagagtagtcgacatnnnnnnnnca 209
           ||||||||||| |||||||||||||||||||||| |||||||||||||||        ||
Sbjct: 803 gaacgcatggtgaagctggtttaattattgtagacaagagtagtcgacatggttgcaaca 744

                                                                       
Query: 210 aaa--ggaatgataagcgagcaagaaaccctagtgggcgtcctcctcctcgcagngcttg 267
           |||  |||| ||||| |||||||| | | ||||||||||||||||||||||||| |||||
Sbjct: 743 aaaaaggaacgataatcgagcaaggagcactagtgggcgtcctcctcctcgcagtgcttg 684

                                                         
Query: 268 gtgtacttggccgagtccagcaggccctccagctccgcggngctgc 313
           |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 683 gtgtacttggccgagtccagcaggccctccagctccgccgggctgc 638



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>ref|NM_197349.1| Oryza sativa (japonica cultivar-group) putative glycine
           decarboxylase subunit (OSJNBa0076F20.1), mRNA
          Length = 768

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295
           ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | |
Sbjct: 569 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 510

                    
Query: 296 ccagctccg 304
           |||||||||
Sbjct: 509 ccagctccg 501



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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence,
            complete sequence
          Length = 165394

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                        
Query: 236  cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295
            ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | |
Sbjct: 5339 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 5280

                     
Query: 296  ccagctccg 304
            |||||||||
Sbjct: 5279 ccagctccg 5271



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                            
Query: 236      cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295
                ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | |
Sbjct: 19377473 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 19377414

                         
Query: 296      ccagctccg 304
                |||||||||
Sbjct: 19377413 ccagctccg 19377405



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>dbj|AK120480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P19, full
           insert sequence
          Length = 843

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295
           ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | |
Sbjct: 657 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 598

                    
Query: 296 ccagctccg 304
           |||||||||
Sbjct: 597 ccagctccg 589



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>dbj|AK104840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F04, full
           insert sequence
          Length = 714

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295
           ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | |
Sbjct: 603 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 544

                    
Query: 296 ccagctccg 304
           |||||||||
Sbjct: 543 ccagctccg 535



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>dbj|AK062851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A03, full
           insert sequence
          Length = 751

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 236 cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295
           ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | |
Sbjct: 616 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 557

                    
Query: 296 ccagctccg 304
           |||||||||
Sbjct: 556 ccagctccg 548



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                            
Query: 236      cctagtgggcgtcctcctcctcgcagngcttggtgtacttggccgagtccagcaggccct 295
                ||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||| | |
Sbjct: 19388749 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 19388690

                         
Query: 296      ccagctccg 304
                |||||||||
Sbjct: 19388689 ccagctccg 19388681



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>gb|AF107258.1| Homo sapiens chromosome 21q22.1 PAC 295E05A, complete sequence
          Length = 154311

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 31     tttccctgcacatgcttctcttttg 55
              |||||||||||| ||||||||||||
Sbjct: 149307 tttccctgcacaagcttctcttttg 149283



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>gb|AF107257.1| Homo sapiens chromosome 21q22.1 PAC L12209, complete sequence
          Length = 139851

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 31    tttccctgcacatgcttctcttttg 55
             |||||||||||| ||||||||||||
Sbjct: 21121 tttccctgcacaagcttctcttttg 21097



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>ref|XM_362103.1| Magnaporthe grisea 70-15 hypothetical protein (MG04548.4) partial cds
          Length = 1674

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 285  cagcaggccctccagctccgc 305
            |||||||||||||||||||||
Sbjct: 1389 cagcaggccctccagctccgc 1369



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>dbj|BS000176.1| Pan troglodytes chromosome 22 clone:RP43-006O21, map 22, complete
             sequences
          Length = 146754

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 31    tttccctgcacatgcttctcttttg 55
             |||||||||||| ||||||||||||
Sbjct: 21662 tttccctgcacaagcttctcttttg 21638



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>dbj|BS000175.1| Pan troglodytes chromosome 22 clone:PTB-091H17, map 22, complete
              sequences
          Length = 183155

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 31     tttccctgcacatgcttctcttttg 55
              |||||||||||| ||||||||||||
Sbjct: 177202 tttccctgcacaagcttctcttttg 177178



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>dbj|AP001706.1| Homo sapiens genomic DNA, chromosome 21q, section 50/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 31     tttccctgcacatgcttctcttttg 55
              |||||||||||| ||||||||||||
Sbjct: 210632 tttccctgcacaagcttctcttttg 210608



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>dbj|AP000236.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-355D16, complete
             sequence
          Length = 159121

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 31    tttccctgcacatgcttctcttttg 55
             |||||||||||| ||||||||||||
Sbjct: 30703 tttccctgcacaagcttctcttttg 30679



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>dbj|AP000196.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B355D16-T1073, segment 2/8, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 31    tttccctgcacatgcttctcttttg 55
             |||||||||||| ||||||||||||
Sbjct: 28419 tttccctgcacaagcttctcttttg 28443



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>dbj|AP000092.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             B335D16-P10G11 region, segment 2/7
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 31    tttccctgcacatgcttctcttttg 55
             |||||||||||| ||||||||||||
Sbjct: 28419 tttccctgcacaagcttctcttttg 28443



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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
              sequence
          Length = 1347793

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    tacacaaacacaagaaaaac 134
              ||||||||||||||||||||
Sbjct: 709835 tacacaaacacaagaaaaac 709816



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>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence
          Length = 126187

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     atggttactgaaatggtata 77
              ||||||||||||||||||||
Sbjct: 125594 atggttactgaaatggtata 125575



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>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5
          Length = 348986

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    tggtttaattattgtagata 185
              ||||||||||||||||||||
Sbjct: 198928 tggtttaattattgtagata 198947



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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    ttggtgtacttggccgagtc 284
              ||||||||||||||||||||
Sbjct: 119028 ttggtgtacttggccgagtc 119009



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>ref|XM_571991.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 1592

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tacacaaacacaagaaaaac 134
           ||||||||||||||||||||
Sbjct: 199 tacacaaacacaagaaaaac 218



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>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone
             BACR16C04, complete sequence
          Length = 159528

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   caaaaggaatgataagcgag 227
             ||||||||||||||||||||
Sbjct: 27528 caaaaggaatgataagcgag 27547



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>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete
             sequence
          Length = 217552

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    ttgtcatggttactgaaatg 72
             ||||||||||||||||||||
Sbjct: 77156 ttgtcatggttactgaaatg 77175



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>gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq23, complete sequence
          Length = 129690

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tttccctgcacatgcttctc 50
             ||||||||||||||||||||
Sbjct: 17108 tttccctgcacatgcttctc 17127



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>gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 117 of 118 of the
             complete sequence
          Length = 232050

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   caaaaggaatgataagcgag 227
             ||||||||||||||||||||
Sbjct: 16435 caaaaggaatgataagcgag 16454



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>gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p, complete sequence
          Length = 176223

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    ggtttaattattgtagataa 186
              ||||||||||||||||||||
Sbjct: 120000 ggtttaattattgtagataa 120019



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>emb|AL445385.4|CNS07ED1 Human chromosome 14 DNA sequence BAC R-126I9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163784

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    aaacacaagaaaaactggaa 139
              ||||||||||||||||||||
Sbjct: 110426 aaacacaagaaaaactggaa 110445


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,269,635
Number of Sequences: 3902068
Number of extensions: 3269635
Number of successful extensions: 53231
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53129
Number of HSP's gapped (non-prelim): 102
length of query: 313
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 291
effective length of database: 17,147,199,772
effective search space: 4989835133652
effective search space used: 4989835133652
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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