ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal23o11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ315794.1|HVU315794 Hordeum vulgare mRNA for Ribosomal protein S7 (rps7 gene) Length = 852 Score = 997 bits (503), Expect = 0.0 Identities = 553/566 (97%), Gaps = 5/566 (0%) Strand = Plus / Minus Query: 8 gcaacaagataaccgtgncagnacgttcataatttaaatgctcaaaactttaacattgtt 67 ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 852 gcaacaagataaccgag-cag-acgttcataatttaaatgctcaaaactttaacattgtt 795 Query: 68 cacgttcattgccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 794 cacgttcattgccatctccatcaaactttcctaaacccaggttgttaacaaaactatgtt 735 Query: 128 tctggaatacattgatagcacaactaactgaagcatcaaccaaaacatttggatacgaag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 734 tctggaatacattgatagcacaactaactgaagcatcaaccaaaacatttggatacgaag 675 Query: 188 atatgaaatggagacattcaaggcattggtcttcatgcggtttcggccacagggtactca 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 atatgaaatggagacattcaaggcattggtcttcatgcggtttcggccacagggtactca 615 Query: 248 aagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctccagcttgtat 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 aagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctccagcttgtat 555 Query: 308 tcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggcaccatccaaa 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 tcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggcaccatccaaa 495 Query: 368 cggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctccaagatacca 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 cggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctccaagatacca 435 Query: 428 tcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaacccttcttgggt 487 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 434 tcatgaacagctgtcagggttctggtgcgagggcgctgaacagcagaacccttcttgggt 375 Query: 488 ggcctnacaatccttcttgttgcaacaaagacaacatncttgccgctaaacttnttctcc 547 ||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||| Sbjct: 374 ggcctcacaatccttcttgttgcaacaaagacaacatccttgccgctaa-ctc--tctcg 318 Query: 548 agntncctgacgagcctgacatggat 573 || | ||||||||||||||||||||| Sbjct: 317 agctccctgacgagcctgacatggat 292
>gb|AY846832.1| Triticum aestivum ribosomal protein S7 mRNA, complete cds Length = 600 Score = 591 bits (298), Expect = e-165 Identities = 341/357 (95%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 599 tcttcaggcggtttcagtcacagggtactcaaagacaacgtctttcccacaaagcctgcg 540 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 539 gtagactgcagagaaggtctccagcttgtactcagtgttgttgcgctccttcgggtccaa 480 Query: 337 gtagatcttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctc 396 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 479 gtagatcttgatgaccttggcaccatccaaacggtacctgacacgcttccccacaatctc 420 Query: 397 agctgggtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcg 456 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 419 agctgggtacacaacatcctccaagataccatcatgaacagctgtcagggtcctggtgcg 360 Query: 457 agggcgctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaa 516 ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct: 359 agggcgctgaacagcagaacccttcttgggtggcctcacgatccttcttgttgcaacaaa 300 Query: 517 gacaacatncttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 |||||||| ||||||||||||||| ||||| || | ||||||||||||||||||||| Sbjct: 299 gacaacatccttgccgctaaacttcttctcgagctccctgacgagcctgacatggat 243
>gb|AF542971.1| Triticum aestivum ribosomal protein S7 mRNA, partial cds Length = 392 Score = 527 bits (266), Expect = e-146 Identities = 337/358 (94%), Gaps = 2/358 (0%) Strand = Plus / Minus Query: 32 gttcataatttaaatgctcaaaactttaacattgttcacgttcattgccatctccatcaa 91 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 359 gttcataatttaaatgctcaaaactttaacattgttcacgttcattgccatcttcatcaa 300 Query: 92 actttcctaaacccaggttgttaacaaaactatgtttctggaatacattgatagcacaac 151 |||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 actt-cctaaccccagatagttaacaaaactatgtttctggaatacattgatagcacaac 241 Query: 152 taactgaagcatcaaccaaaacatttggatacgaa-gatatgaaatggagacattcaagg 210 |||| | | ||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 240 taaccaagacctcaaccaaaacatttggatcagaaagatatgaaatggagacattcaagg 181 Query: 211 cattggtcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaag 270 ||| | |||||| |||||||| | |||||||||||||||||||||||||||||| ||||| Sbjct: 180 catggatcttcaggcggtttcagtcacagggtactcaaagacaacgtctttcccacaaag 121 Query: 271 cctgcggtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgg 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 cctgcggtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgg 61 Query: 331 gtccaagtagatcttgatgaccttggcaccatccaaacggtacctgacgcgcttcccc 388 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 60 gtccaagtagatcttgatgaccttggcaccatccaaacggtatctgacacgcttcccc 3
>gb|AY290724.1| Triticum aestivum ribosomal protein S7-like mRNA, partial sequence Length = 393 Score = 527 bits (266), Expect = e-146 Identities = 337/358 (94%), Gaps = 2/358 (0%) Strand = Plus / Minus Query: 32 gttcataatttaaatgctcaaaactttaacattgttcacgttcattgccatctccatcaa 91 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 360 gttcataatttaaatgctcaaaactttaacattgttcacgttcattgccatcttcatcaa 301 Query: 92 actttcctaaacccaggttgttaacaaaactatgtttctggaatacattgatagcacaac 151 |||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 actt-cctaaccccagatagttaacaaaactatgtttctggaatacattgatagcacaac 242 Query: 152 taactgaagcatcaaccaaaacatttggatacgaa-gatatgaaatggagacattcaagg 210 |||| | | ||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 241 taaccaagacctcaaccaaaacatttggatcagaaagatatgaaatggagacattcaagg 182 Query: 211 cattggtcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaag 270 ||| | |||||| |||||||| | |||||||||||||||||||||||||||||| ||||| Sbjct: 181 catggatcttcaggcggtttcagtcacagggtactcaaagacaacgtctttcccacaaag 122 Query: 271 cctgcggtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgg 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cctgcggtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgg 62 Query: 331 gtccaagtagatcttgatgaccttggcaccatccaaacggtacctgacgcgcttcccc 388 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 61 gtccaagtagatcttgatgaccttggcaccatccaaacggtatctgacacgcttcccc 4
>dbj|AK122143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136J20, full insert sequence Length = 966 Score = 392 bits (198), Expect = e-106 Identities = 316/357 (88%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||||||| |||| |||||||| ||||||||||| Sbjct: 654 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 595 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 |||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 594 gtagaccgcggagaaggtctcgagcttgtattcggtattgttgcgctcctttgggtccaa 535 Query: 337 gtagatcttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctc 396 | | ||||||||||||||||||||||||| |||||| |||| |||||| || |||||||| Sbjct: 534 gaaaatcttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctc 475 Query: 397 agctgggtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcg 456 ||||||||| || ||||||||||||||||||||||||||||| || || ||||| ||||| Sbjct: 474 agctgggtagactacatcctccaagataccatcatgaacagcagtaagagttcttgtgcg 415 Query: 457 agggcgctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaa 516 ||||||||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 414 agggcgctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaat 355 Query: 517 gacaacatncttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 || |||| ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 354 taccacatccttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 298 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattgttca 69 ||||||||||||| |||||||||||||||||||| Sbjct: 786 ataatttaaatgcccaaaactttaacattgttca 753
>dbj|AK059192.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H09, full insert sequence Length = 830 Score = 392 bits (198), Expect = e-106 Identities = 316/357 (88%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||||||| |||| |||||||| ||||||||||| Sbjct: 653 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 594 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 |||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 593 gtagaccgcggagaaggtctcgagcttgtattcggtattgttgcgctcctttgggtccaa 534 Query: 337 gtagatcttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctc 396 | | ||||||||||||||||||||||||| |||||| |||| |||||| || |||||||| Sbjct: 533 gaaaatcttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctc 474 Query: 397 agctgggtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcg 456 ||||||||| || ||||||||||||||||||||||||||||| || || ||||| ||||| Sbjct: 473 agctgggtagactacatcctccaagataccatcatgaacagcagtaagagttcttgtgcg 414 Query: 457 agggcgctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaa 516 ||||||||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 413 agggcgctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaat 354 Query: 517 gacaacatncttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 || |||| ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 353 taccacatccttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 297 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattgttca 69 ||||||||||||| |||||||||||||||||||| Sbjct: 785 ataatttaaatgcccaaaactttaacattgttca 752
>gb|BT016582.1| Zea mays clone Contig415 mRNA sequence Length = 907 Score = 379 bits (191), Expect = e-102 Identities = 306/346 (88%) Strand = Plus / Minus Query: 228 tttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcag 287 |||||| || ||||||||||||||| || |||||||| || |||||||||||||| |||| Sbjct: 676 tttcggtcatagggtactcaaagaccacatctttcccacacagcctgcggtagaccgcag 617 Query: 288 agaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttga 347 | |||||||||||||||||||||||||||| | |||||||||||||||| | ||||||| Sbjct: 616 tgcaggtctccagcttgtattcagtgttgttcctctcctttgggtccaagaaaatcttga 557 Query: 348 tgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgggtaca 407 | | ||||| |||||||| |||||| ||||| |||||||||||||||||||||||||| | Sbjct: 556 taatcttggaaccatccagacggtatctgacacgcttccccacaatctcagctgggtaga 497 Query: 408 caacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaa 467 |||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||| ||| Sbjct: 496 caacatcctccaagatgccatcgtgaacagcagtcagagtcctggtgcgagggcgcagaa 437 Query: 468 cagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaagacaacatnct 527 |||| |||||||||||||||||||| |||||||| ||||| ||||||| || |||| || Sbjct: 436 cagctgaacccttcttgggtggcctcacaatcctccttgtagcaacaattaccacatcct 377 Query: 528 tgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||| || || |||||||| | ||||||||| ||||||||||| Sbjct: 376 tgccgctgaatttcttctccagctccctgacgagtctgacatggat 331 Score = 58.0 bits (29), Expect = 3e-05 Identities = 42/45 (93%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 37 taatttaaatgctcaaaactttaacattgttcacgttcattgcca 81 ||||||||||||||||||| |||||||||||||||| || ||||| Sbjct: 852 taatttaaatgctcaaaac-ttaacattgttcacgtccactgcca 809
>gb|AY103554.1| Zea mays PCO154340 mRNA sequence Length = 1075 Score = 379 bits (191), Expect = e-102 Identities = 306/346 (88%) Strand = Plus / Minus Query: 228 tttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcag 287 |||||| || ||||||||||||||| || |||||||| || |||||||||||||| |||| Sbjct: 715 tttcggtcatagggtactcaaagaccacatctttcccacacagcctgcggtagaccgcag 656 Query: 288 agaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttga 347 | |||||||||||||||||||||||||||| | |||||||||||||||| | ||||||| Sbjct: 655 tgcaggtctccagcttgtattcagtgttgttcctctcctttgggtccaagaaaatcttga 596 Query: 348 tgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgggtaca 407 | | ||||| |||||||| |||||| ||||| |||||||||||||||||||||||||| | Sbjct: 595 taatcttggaaccatccagacggtatctgacacgcttccccacaatctcagctgggtaga 536 Query: 408 caacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaa 467 |||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||| ||| Sbjct: 535 caacatcctccaagatgccatcgtgaacagcagtcagagtcctggtgcgagggcgcagaa 476 Query: 468 cagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaagacaacatnct 527 |||| |||||||||||||||||||| |||||||| ||||| ||||||| || |||| || Sbjct: 475 cagctgaacccttcttgggtggcctcacaatcctccttgtagcaacaattaccacatcct 416 Query: 528 tgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||| || || |||||||| | ||||||||| ||||||||||| Sbjct: 415 tgccgctgaatttcttctccagctccctgacgagtctgacatggat 370 Score = 58.0 bits (29), Expect = 3e-05 Identities = 42/45 (93%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 37 taatttaaatgctcaaaactttaacattgttcacgttcattgcca 81 ||||||||||||||||||| |||||||||||||||| || ||||| Sbjct: 892 taatttaaatgctcaaaac-ttaacattgttcacgtccactgcca 849
>gb|AF118149.1|AF118149 Secale cereale ribosomal protein S7 mRNA, complete cds Length = 819 Score = 274 bits (138), Expect = 3e-70 Identities = 301/357 (84%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || |||||||| || || |||||| | || || ||||| || ||||||||||| Sbjct: 617 tcttcaagcagtttcggcaaccggatactcatacaccacatctttgccacaaagcctgcg 558 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 ||| ||||||| |||||| |||| |||||| || ||||||||||| ||| |||||||||| Sbjct: 557 gtacactgcagtgaaggtatccaacttgtactctgtgttgttgcgttccattgggtccaa 498 Query: 337 gtagatcttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctc 396 | ||||||| |||| ||| | ||||| | ||| || ||||| || |||||||||||||| Sbjct: 497 gaagatcttaatgatcttcgagccatctagacgatatctgacacgtttccccacaatctc 438 Query: 397 agctgggtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcg 456 |||||||||||||||||||||||| | |||||||||||||| |||| |||||||| || Sbjct: 437 agctgggtacacaacatcctccaaaaggccatcatgaacagcagtcaaagttctggtacg 378 Query: 457 agggcgctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaa 516 |||||| |||||| |||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 377 agggcgaacaacagcagaacccttcttgggtggcctcacaatccgccttgtagcaacaat 318 Query: 517 gacaacatncttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||| | ||||||||| ||||| ||||| || | ||||||||||||||| ||||| Sbjct: 317 aacaacgtccttgccgctgaacttcttctcgagctccctgacgagcctgacgtggat 261
>dbj|AK061276.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E11, full insert sequence Length = 811 Score = 234 bits (118), Expect = 3e-58 Identities = 190/214 (88%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||| ||| |||| |||||||| ||||||||||| Sbjct: 576 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 517 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 ||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 516 gtagactgcggagaaggtctcaagcttgtattcggtattgttgcgctcctttgggtccaa 457 Query: 337 gtagatcttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctc 396 | | ||||||||||||||||||||||||| |||||| |||| |||||| || |||||||| Sbjct: 456 gaaaatcttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctc 397 Query: 397 agctgggtacacaacatcctccaagataccatca 430 ||||||||| || ||||| |||||||||| |||| Sbjct: 396 agctgggtagactacatcttccaagatacaatca 363 Score = 58.0 bits (29), Expect = 3e-05 Identities = 46/53 (86%) Strand = Plus / Minus Query: 521 acatncttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 |||| ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 360 acatccttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 308 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattg 65 ||||||||||||| |||||||||||||||| Sbjct: 707 ataatttaaatgcccaaaactttaacattg 678
>gb|BT017481.1| Zea mays clone EL01N0409H01.c mRNA sequence Length = 840 Score = 224 bits (113), Expect = 2e-55 Identities = 279/336 (83%) Strand = Plus / Minus Query: 238 agggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctc 297 ||||||||||||||| || |||||||| || |||||||||||||| ||| | ||| ||| Sbjct: 629 agggtactcaaagaccacatctttcccacacagcctgcggtagaccgcaatgcagggctc 570 Query: 298 cagcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggc 357 |||||||||||||| |||||| | |||||||||||||||| | |||||||| | ||||| Sbjct: 569 cagcttgtattcagagttgttcctctcctttgggtccaagaaaatcttgataatcttgga 510 Query: 358 accatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctc 417 ||||||| |||||| |||| |||||||| ||||||||| |||||| ||||||||||| Sbjct: 509 cccatccacacggtatgtgacatgcttcccctcaatctcagttgggtagacaacatcctc 450 Query: 418 caagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaacc 477 ||| || ||||| |||||||| |||| || ||||| | ||||||| ||||||| || || Sbjct: 449 caaaatgccatcgtgaacagcagtcacagtcctggtcctagggcgcagaacagctgaccc 390 Query: 478 cttcttgggtggcctnacaatccttcttgttgcaacaaagacaacatncttgccgctaaa 537 |||| |||||| ||| ||||||| ||||| ||||||| || |||| ||| ||| | || Sbjct: 389 cttcgtgggtgccctcacaatcccccttgtagcaacaattaccacatccttcccgatgaa 330 Query: 538 cttnttctccagntncctgacgagcctgacatggat 573 || |||||||| | ||||| ||| ||||||||||| Sbjct: 329 tttcttctccagctccctgaagagtctgacatggat 294 Score = 50.1 bits (25), Expect = 0.008 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 37 taatttaaatgctcaaaactttaacattgttcacgttcattgcca 81 |||||||| |||||||||| |||||||||||||||| || ||||| Sbjct: 815 taatttaattgctcaaaac-ttaacattgttcacgtccactgcca 772
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 218 bits (110), Expect = 2e-53 Identities = 157/173 (90%) Strand = Plus / Minus Query: 343 cttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgg 402 ||||||||||||||||||||||| |||||| |||| |||||| || |||||||||||||| Sbjct: 10367128 cttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctcagctgg 10367069 Query: 403 gtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcg 462 ||| || ||||||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct: 10367068 gtagactacatcctccaagataccatcatgaacagcagtaagagttcttgtgcgagggcg 10367009 Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaa 515 ||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 10367008 ctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaa 10366956 Score = 210 bits (106), Expect = 4e-51 Identities = 156/173 (90%) Strand = Plus / Minus Query: 343 cttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgg 402 ||||||||||||||||||||||| |||||| |||| |||||| || |||||||||||||| Sbjct: 10371383 cttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctcagctgg 10371324 Query: 403 gtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcg 462 ||| || |||||||||||||||| |||||||||||| || || ||||| ||||||||||| Sbjct: 10371323 gtagactacatcctccaagatacaatcatgaacagcggtaagagttcttgtgcgagggcg 10371264 Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaa 515 ||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 10371263 ctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaa 10371211 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||| ||| |||| |||||||| ||||||||||| Sbjct: 10371758 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 10371699 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 ||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 10371698 gtagactgcggagaaggtctcaagcttgtattcggtattgttgcgctcctttgggtccaa 10371639 Query: 337 g 337 | Sbjct: 10371638 g 10371638 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||||||| |||| |||||||| ||||||||||| Sbjct: 10367502 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 10367443 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 |||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 10367442 gtagaccgcggagaaggtctcgagcttgtattcggtattgttgcgctcctttgggtccaa 10367383 Query: 337 g 337 | Sbjct: 10367382 g 10367382 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattgttca 69 ||||||||||||| |||||||||||||||||||| Sbjct: 10367634 ataatttaaatgcccaaaactttaacattgttca 10367601 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 526 cttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 10370578 cttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 10370531 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 526 cttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 10366334 cttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 10366287 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattg 65 ||||||||||||| |||||||||||||||| Sbjct: 10371889 ataatttaaatgcccaaaactttaacattg 10371860
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 218 bits (110), Expect = 2e-53 Identities = 157/173 (90%) Strand = Plus / Minus Query: 343 cttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgg 402 ||||||||||||||||||||||| |||||| |||| |||||| || |||||||||||||| Sbjct: 23681 cttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctcagctgg 23622 Query: 403 gtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcg 462 ||| || ||||||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct: 23621 gtagactacatcctccaagataccatcatgaacagcagtaagagttcttgtgcgagggcg 23562 Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaa 515 ||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 23561 ctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaa 23509 Score = 210 bits (106), Expect = 4e-51 Identities = 156/173 (90%) Strand = Plus / Minus Query: 343 cttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgg 402 ||||||||||||||||||||||| |||||| |||| |||||| || |||||||||||||| Sbjct: 27936 cttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctcagctgg 27877 Query: 403 gtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcg 462 ||| || |||||||||||||||| |||||||||||| || || ||||| ||||||||||| Sbjct: 27876 gtagactacatcctccaagatacaatcatgaacagcggtaagagttcttgtgcgagggcg 27817 Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaa 515 ||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 27816 ctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaa 27764 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||| ||| |||| |||||||| ||||||||||| Sbjct: 28311 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 28252 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 ||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 28251 gtagactgcggagaaggtctcaagcttgtattcggtattgttgcgctcctttgggtccaa 28192 Query: 337 g 337 | Sbjct: 28191 g 28191 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||||||| |||| |||||||| ||||||||||| Sbjct: 24055 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 23996 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 |||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 23995 gtagaccgcggagaaggtctcgagcttgtattcggtattgttgcgctcctttgggtccaa 23936 Query: 337 g 337 | Sbjct: 23935 g 23935 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattgttca 69 ||||||||||||| |||||||||||||||||||| Sbjct: 24187 ataatttaaatgcccaaaactttaacattgttca 24154 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 526 cttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 27131 cttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 27084 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 526 cttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 22887 cttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 22840 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattg 65 ||||||||||||| |||||||||||||||| Sbjct: 28442 ataatttaaatgcccaaaactttaacattg 28413
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 218 bits (110), Expect = 2e-53 Identities = 157/173 (90%) Strand = Plus / Minus Query: 343 cttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgg 402 ||||||||||||||||||||||| |||||| |||| |||||| || |||||||||||||| Sbjct: 80594 cttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctcagctgg 80535 Query: 403 gtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcg 462 ||| || ||||||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct: 80534 gtagactacatcctccaagataccatcatgaacagcagtaagagttcttgtgcgagggcg 80475 Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaa 515 ||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 80474 ctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaa 80422 Score = 210 bits (106), Expect = 4e-51 Identities = 156/173 (90%) Strand = Plus / Minus Query: 343 cttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgg 402 ||||||||||||||||||||||| |||||| |||| |||||| || |||||||||||||| Sbjct: 84849 cttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctcagctgg 84790 Query: 403 gtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcg 462 ||| || |||||||||||||||| |||||||||||| || || ||||| ||||||||||| Sbjct: 84789 gtagactacatcctccaagatacaatcatgaacagcggtaagagttcttgtgcgagggcg 84730 Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaa 515 ||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 84729 ctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaa 84677 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||| ||| |||| |||||||| ||||||||||| Sbjct: 85224 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 85165 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 ||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 85164 gtagactgcggagaaggtctcaagcttgtattcggtattgttgcgctcctttgggtccaa 85105 Query: 337 g 337 | Sbjct: 85104 g 85104 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||||||| |||| |||||||| ||||||||||| Sbjct: 80968 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 80909 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 |||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 80908 gtagaccgcggagaaggtctcgagcttgtattcggtattgttgcgctcctttgggtccaa 80849 Query: 337 g 337 | Sbjct: 80848 g 80848 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattgttca 69 ||||||||||||| |||||||||||||||||||| Sbjct: 81100 ataatttaaatgcccaaaactttaacattgttca 81067 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 526 cttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 84044 cttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 83997 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 526 cttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 79800 cttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 79753 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattg 65 ||||||||||||| |||||||||||||||| Sbjct: 85355 ataatttaaatgcccaaaactttaacattg 85326
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 218 bits (110), Expect = 2e-53 Identities = 157/173 (90%) Strand = Plus / Minus Query: 343 cttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgg 402 ||||||||||||||||||||||| |||||| |||| |||||| || |||||||||||||| Sbjct: 10365229 cttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctcagctgg 10365170 Query: 403 gtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcg 462 ||| || ||||||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct: 10365169 gtagactacatcctccaagataccatcatgaacagcagtaagagttcttgtgcgagggcg 10365110 Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaa 515 ||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 10365109 ctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaa 10365057 Score = 210 bits (106), Expect = 4e-51 Identities = 156/173 (90%) Strand = Plus / Minus Query: 343 cttgatgaccttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgg 402 ||||||||||||||||||||||| |||||| |||| |||||| || |||||||||||||| Sbjct: 10369484 cttgatgaccttggcaccatccagacggtatctgatgcgcttgccaacaatctcagctgg 10369425 Query: 403 gtacacaacatcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcg 462 ||| || |||||||||||||||| |||||||||||| || || ||||| ||||||||||| Sbjct: 10369424 gtagactacatcctccaagatacaatcatgaacagcggtaagagttcttgtgcgagggcg 10369365 Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaa 515 ||||||||| || ||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 10369364 ctgaacagccgagcccttcttgggaggcctcacaatcctccttgttgcaacaa 10369312 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||| ||| |||| |||||||| ||||||||||| Sbjct: 10369859 tcttcaagcagtttcagtcatagggtactcgaaggcaacatctttcccacaaagcctgcg 10369800 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 ||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 10369799 gtagactgcggagaaggtctcaagcttgtattcggtattgttgcgctcctttgggtccaa 10369740 Query: 337 g 337 | Sbjct: 10369739 g 10369739 Score = 137 bits (69), Expect = 4e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 217 tcttcatgcggtttcggccacagggtactcaaagacaacgtctttcccgcaaagcctgcg 276 |||||| || ||||| | || ||||||||||||| |||| |||||||| ||||||||||| Sbjct: 10365603 tcttcaagcagtttcagtcatagggtactcaaaggcaacatctttcccacaaagcctgcg 10365544 Query: 277 gtagactgcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 |||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 10365543 gtagaccgcggagaaggtctcgagcttgtattcggtattgttgcgctcctttgggtccaa 10365484 Query: 337 g 337 | Sbjct: 10365483 g 10365483 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattgttca 69 ||||||||||||| |||||||||||||||||||| Sbjct: 10365735 ataatttaaatgcccaaaactttaacattgttca 10365702 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 526 cttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 10368679 cttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 10368632 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 526 cttgccgctaaacttnttctccagntncctgacgagcctgacatggat 573 ||||||||| ||||| ||||| || | |||||| |||||||||||||| Sbjct: 10364435 cttgccgctgaacttcttctcgagctccctgacaagcctgacatggat 10364388 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaactttaacattg 65 ||||||||||||| |||||||||||||||| Sbjct: 10369990 ataatttaaatgcccaaaactttaacattg 10369961
>gb|AF529175.1| Oryza sativa (japonica cultivar-group) ribosomal protein S7 (RPS7) mRNA, complete cds Length = 919 Score = 143 bits (72), Expect = 7e-31 Identities = 179/215 (83%) Strand = Plus / Minus Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggca 358 |||||||| || ||||||||||||||||||||||||| | ||||||| |||| || | Sbjct: 602 agcttgtactcggtgttgttgcgctcctttgggtccaggaagatcttcatgatttttcta 543 Query: 359 ccatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctcc 418 |||||||| |||| ||||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct: 542 ccatccaagtggtatctgacacgcttcccaacaatctctgctggatacacaacatcctcc 483 Query: 419 aagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaaccc 478 ||||| |||||||||||||| || || || | ||| |||||||| |||||| || || Sbjct: 482 aagatgccatcatgaacagcagtaagtgtgcgggtacgagggcgaacaacagctgagcct 423 Query: 479 ttcttgggtggcctnacaatccttcttgttgcaac 513 ||||| || ||||| || || ||||| |||||||| Sbjct: 422 ttctttgggggcctcactattcttctagttgcaac 388
>dbj|AK104191.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C09, full insert sequence Length = 910 Score = 143 bits (72), Expect = 7e-31 Identities = 179/215 (83%) Strand = Plus / Minus Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggca 358 |||||||| || ||||||||||||||||||||||||| | ||||||| |||| || | Sbjct: 613 agcttgtactcggtgttgttgcgctcctttgggtccaggaagatcttcatgatttttcta 554 Query: 359 ccatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctcc 418 |||||||| |||| ||||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct: 553 ccatccaagtggtatctgacacgcttcccaacaatctctgctggatacacaacatcctcc 494 Query: 419 aagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaaccc 478 ||||| |||||||||||||| || || || | ||| |||||||| |||||| || || Sbjct: 493 aagatgccatcatgaacagcagtaagtgtgcgggtacgagggcgaacaacagctgagcct 434 Query: 479 ttcttgggtggcctnacaatccttcttgttgcaac 513 ||||| || ||||| || || ||||| |||||||| Sbjct: 433 ttctttgggggcctcactattcttctagttgcaac 399
>dbj|AK061627.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B02, full insert sequence Length = 910 Score = 143 bits (72), Expect = 7e-31 Identities = 179/215 (83%) Strand = Plus / Minus Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggca 358 |||||||| || ||||||||||||||||||||||||| | ||||||| |||| || | Sbjct: 613 agcttgtactcggtgttgttgcgctcctttgggtccaggaagatcttcatgatttttcta 554 Query: 359 ccatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctcc 418 |||||||| |||| ||||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct: 553 ccatccaagtggtatctgacacgcttcccaacaatctctgctggatacacaacatcctcc 494 Query: 419 aagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaaccc 478 ||||| |||||||||||||| || || || | ||| |||||||| |||||| || || Sbjct: 493 aagatgccatcatgaacagcagtaagtgtgcgggtacgagggcgaacaacagctgagcct 434 Query: 479 ttcttgggtggcctnacaatccttcttgttgcaac 513 ||||| || ||||| || || ||||| |||||||| Sbjct: 433 ttctttgggggcctcactattcttctagttgcaac 399
>dbj|AK103081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118F01, full insert sequence Length = 903 Score = 135 bits (68), Expect = 2e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggca 358 |||||||| || ||||||||||||||||||||||||| | ||||||| |||| || | Sbjct: 613 agcttgtactcggtgttgttgcgctcctttgggtccaggaagatcttcatgatttttcta 554 Query: 359 ccatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctcc 418 ||| |||| |||| ||||| |||||||| |||||||| ||||| ||||||||||||||| Sbjct: 553 ccacccaagtggtatctgacacgcttcccaacaatctctgctggatacacaacatcctcc 494 Query: 419 aagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaaccc 478 ||||| |||||||||||||| || || || | ||| |||||||| |||||| || || Sbjct: 493 aagatgccatcatgaacagcagtaagtgtgcgggtacgagggcgaacaacagctgagcct 434 Query: 479 ttcttgggtggcctnacaatccttcttgttgcaac 513 ||||| || ||||| || || ||||| |||||||| Sbjct: 433 ttctttgggggcctcactattcttctagttgcaac 399
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 129 bits (65), Expect = 1e-26 Identities = 95/105 (90%) Strand = Plus / Plus Query: 239 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctcc 298 |||||||||||| |||| |||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 13024240 gggtactcaaaggcaacatctttcccacaaagcctacggtagactgcaaagaaggtctcc 13024299 Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatc 343 ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 13024300 agcttgtattcgatattgttgcgctcctttggatccaagaagatc 13024344 Score = 95.6 bits (48), Expect = 2e-16 Identities = 120/143 (83%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 382 cttccccacaatctcagctgggtacacaacatcctccaagataccatcatgaacagctgt 441 |||||| ||||||||||||||| | || |||||||||||||| ||||||||||||| | Sbjct: 13024658 cttcccaacaatctcagctggg-agactacatcctccaagattccatcatgaacagtaat 13024716 Query: 442 cagggttctggtgcgagggcgctgaacagcggaacccttcttgggtggcctnacaatcct 501 || ||||| || ||||| | |||||||| |||||||| ||| | ||||| |||||||| Sbjct: 13024717 caaagttcttgtacgaggatgatgaacagctgaacccttattgagaggcctcacaatcct 13024776 Query: 502 tcttgttgcaacaaagacaacat 524 ||||||||| ||||||| |||| Sbjct: 13024777 ccttgttgcatcaaagaccacat 13024799 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 36 ataatttaaatgctcaaaactttaacattgtt 67 |||||| |||||| ||||||||||| |||||| Sbjct: 13024106 ataattcaaatgcccaaaactttaatattgtt 13024137
>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0688H12 Length = 139279 Score = 129 bits (65), Expect = 1e-26 Identities = 95/105 (90%) Strand = Plus / Plus Query: 239 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctcc 298 |||||||||||| |||| |||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 133883 gggtactcaaaggcaacatctttcccacaaagcctacggtagactgcaaagaaggtctcc 133942 Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatc 343 ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 133943 agcttgtattcgatattgttgcgctcctttggatccaagaagatc 133987 Score = 95.6 bits (48), Expect = 2e-16 Identities = 120/143 (83%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 382 cttccccacaatctcagctgggtacacaacatcctccaagataccatcatgaacagctgt 441 |||||| ||||||||||||||| | || |||||||||||||| ||||||||||||| | Sbjct: 134301 cttcccaacaatctcagctggg-agactacatcctccaagattccatcatgaacagtaat 134359 Query: 442 cagggttctggtgcgagggcgctgaacagcggaacccttcttgggtggcctnacaatcct 501 || ||||| || ||||| | |||||||| |||||||| ||| | ||||| |||||||| Sbjct: 134360 caaagttcttgtacgaggatgatgaacagctgaacccttattgagaggcctcacaatcct 134419 Query: 502 tcttgttgcaacaaagacaacat 524 ||||||||| ||||||| |||| Sbjct: 134420 ccttgttgcatcaaagaccacat 134442 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 36 ataatttaaatgctcaaaactttaacattgtt 67 |||||| |||||| ||||||||||| |||||| Sbjct: 133749 ataattcaaatgcccaaaactttaatattgtt 133780
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476C12 Length = 157570 Score = 129 bits (65), Expect = 1e-26 Identities = 95/105 (90%) Strand = Plus / Plus Query: 239 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctcc 298 |||||||||||| |||| |||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 817 gggtactcaaaggcaacatctttcccacaaagcctacggtagactgcaaagaaggtctcc 876 Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatc 343 ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 877 agcttgtattcgatattgttgcgctcctttggatccaagaagatc 921 Score = 95.6 bits (48), Expect = 2e-16 Identities = 120/143 (83%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 382 cttccccacaatctcagctgggtacacaacatcctccaagataccatcatgaacagctgt 441 |||||| ||||||||||||||| | || |||||||||||||| ||||||||||||| | Sbjct: 1235 cttcccaacaatctcagctggg-agactacatcctccaagattccatcatgaacagtaat 1293 Query: 442 cagggttctggtgcgagggcgctgaacagcggaacccttcttgggtggcctnacaatcct 501 || ||||| || ||||| | |||||||| |||||||| ||| | ||||| |||||||| Sbjct: 1294 caaagttcttgtacgaggatgatgaacagctgaacccttattgagaggcctcacaatcct 1353 Query: 502 tcttgttgcaacaaagacaacat 524 ||||||||| ||||||| |||| Sbjct: 1354 ccttgttgcatcaaagaccacat 1376 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 36 ataatttaaatgctcaaaactttaacattgtt 67 |||||| |||||| ||||||||||| |||||| Sbjct: 683 ataattcaaatgcccaaaactttaatattgtt 714
>ref|XM_465276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 339 Score = 107 bits (54), Expect = 4e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 239 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctcc 298 |||||||||||| |||| |||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 320 gggtactcaaaggcaacatctttcccacaaagcctacggtagactgcaaagaaggtctcc 261 Query: 299 agcttgtattcagtgttgttgcgctc 324 ||||||||||| | ||||||||||| Sbjct: 260 agcttgtattcgatattgttgcgctc 235 Score = 103 bits (52), Expect = 6e-19 Identities = 134/163 (82%) Strand = Plus / Minus Query: 411 catcctccaagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacag 470 ||||||||||||| ||||||||||||| ||| ||||| || ||||| | ||||||| Sbjct: 235 catcctccaagattccatcatgaacagtaatcaaagttcttgtacgaggatgatgaacag 176 Query: 471 cggaacccttcttgggtggcctnacaatccttcttgttgcaacaaagacaacatncttgc 530 | |||||||| ||| | ||||| |||||||| ||||||||| ||||||| |||| ||||| Sbjct: 175 ctgaacccttattgagaggcctcacaatcctccttgttgcatcaaagaccacatccttgc 116 Query: 531 cgctaaacttnttctccagntncctgacgagcctgacatggat 573 | || ||||| ||||| || | | |||| ||||| |||||||| Sbjct: 115 cactgaacttcttctcaagctccttgacaagcctaacatggat 73
>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01, complete sequence Length = 151938 Score = 105 bits (53), Expect = 2e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 358 accatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctc 417 ||||||||| |||| ||||| |||||||| |||||||| ||||| |||||||||||||| Sbjct: 15608 accatccaagtggtatctgacacgcttcccaacaatctctgctggatacacaacatcctc 15667 Query: 418 caagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaacc 477 |||||| |||||||||||||| || || || | ||| |||||||| |||||| || || Sbjct: 15668 caagatgccatcatgaacagcagtaagtgtgcgggtacgagggcgaacaacagctgagcc 15727 Query: 478 cttcttgggtggcctnacaatccttcttgttgcaac 513 ||||| || ||||| || || ||||| |||||||| Sbjct: 15728 tttctttgggggcctcactattcttctagttgcaac 15763 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatct 344 |||||||| || ||||||||||||||||||||||||| | |||||| Sbjct: 14993 agcttgtactcggtgttgttgcgctcctttgggtccaggaagatct 15038
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05, complete sequence Length = 143400 Score = 105 bits (53), Expect = 2e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 358 accatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctc 417 ||||||||| |||| ||||| |||||||| |||||||| ||||| |||||||||||||| Sbjct: 119421 accatccaagtggtatctgacacgcttcccaacaatctctgctggatacacaacatcctc 119480 Query: 418 caagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaacc 477 |||||| |||||||||||||| || || || | ||| |||||||| |||||| || || Sbjct: 119481 caagatgccatcatgaacagcagtaagtgtgcgggtacgagggcgaacaacagctgagcc 119540 Query: 478 cttcttgggtggcctnacaatccttcttgttgcaac 513 ||||| || ||||| || || ||||| |||||||| Sbjct: 119541 tttctttgggggcctcactattcttctagttgcaac 119576 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatct 344 |||||||| || ||||||||||||||||||||||||| | |||||| Sbjct: 118806 agcttgtactcggtgttgttgcgctcctttgggtccaggaagatct 118851
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 105 bits (53), Expect = 2e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 358 accatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctc 417 ||||||||| |||| ||||| |||||||| |||||||| ||||| |||||||||||||| Sbjct: 16168251 accatccaagtggtatctgacacgcttcccaacaatctctgctggatacacaacatcctc 16168310 Query: 418 caagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaacc 477 |||||| |||||||||||||| || || || | ||| |||||||| |||||| || || Sbjct: 16168311 caagatgccatcatgaacagcagtaagtgtgcgggtacgagggcgaacaacagctgagcc 16168370 Query: 478 cttcttgggtggcctnacaatccttcttgttgcaac 513 ||||| || ||||| || || ||||| |||||||| Sbjct: 16168371 tttctttgggggcctcactattcttctagttgcaac 16168406 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatct 344 |||||||| || ||||||||||||||||||||||||| | |||||| Sbjct: 16167636 agcttgtactcggtgttgttgcgctcctttgggtccaggaagatct 16167681
>gb|DQ228355.1| Solanum tuberosum clone 153A08 ribosomal protein S7-like protein mRNA, complete cds Length = 881 Score = 81.8 bits (41), Expect = 2e-12 Identities = 242/310 (78%) Strand = Plus / Minus Query: 239 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctcc 298 ||||||||||| ||||| ||||| || ||||| | | ||| ||||| || ||||||||| Sbjct: 653 gggtactcaaacacaacatctttgcctgaaagctttctgtaaactgctgaaaaggtctcc 594 Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggca 358 | ||| || || |||||||| || ||||| ||||||||||| | ||| || | ||||| Sbjct: 593 aacttatactctgtgttgtttcgttccttggggtccaagtacaccttcattatcttggag 534 Query: 359 ccatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctcc 418 ||||| | ||| ||||| |||||||| |||||||| || ||| || | ||||||| Sbjct: 533 ccatcaacacgatacctagtacgcttcccaacaatctccgcagggacaaccaaatcctcc 474 Query: 419 aagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaaccc 478 || || |||||||||||| ||| || ||||||||||| || || ||| |||| ||||| Sbjct: 473 aatatggcatcatgaacagatgtaagagttctggtgcggggtcgttgagcagctgaacct 414 Query: 479 ttcttgggtggcctnacaatccttcttgttgcaacaaagacaacatncttgccgctaaac 538 ||||||| || || || ||||| || || |||| ||||| |||| |||||| || || Sbjct: 413 ctcttgggaggtctcactatcctcctggtcgcaataaagatcacatccttgccactgaat 354 Query: 539 ttnttctcca 548 || ||||||| Sbjct: 353 ttcttctcca 344
>gb|DQ200382.1| Solanum tuberosum clone 063A09 unknown mRNA Length = 817 Score = 81.8 bits (41), Expect = 2e-12 Identities = 242/310 (78%) Strand = Plus / Minus Query: 239 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctcc 298 ||||||||||| ||||| ||||| || ||||| | | ||| ||||| || ||||||||| Sbjct: 640 gggtactcaaacacaacatctttgcctgaaagctttctgtaaactgctgaaaaggtctcc 581 Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggca 358 | ||| || || |||||||| || ||||| ||||||||||| | ||| || | ||||| Sbjct: 580 aacttatactctgtgttgtttcgttccttggggtccaagtacaccttcattatcttggag 521 Query: 359 ccatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctcc 418 ||||| | ||| ||||| |||||||| |||||||| || ||| || | ||||||| Sbjct: 520 ccatcaacacgatacctagtacgcttcccaacaatctccgcagggacaaccaaatcctcc 461 Query: 419 aagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaaccc 478 || || |||||||||||| ||| || ||||||||||| || || ||| |||| ||||| Sbjct: 460 aatatggcatcatgaacagatgtaagagttctggtgcggggtcgttgagcagctgaacct 401 Query: 479 ttcttgggtggcctnacaatccttcttgttgcaacaaagacaacatncttgccgctaaac 538 ||||||| || || || ||||| || || |||| ||||| |||| |||||| || || Sbjct: 400 ctcttgggaggtctcactatcctcctggtcgcaataaagatcacatccttgccactgaat 341 Query: 539 ttnttctcca 548 || ||||||| Sbjct: 340 ttcttctcca 331
>gb|DQ191636.1| Solanum tuberosum 40S ribosomal protein S7-like protein mRNA, complete cds Length = 893 Score = 65.9 bits (33), Expect = 1e-07 Identities = 240/310 (77%) Strand = Plus / Minus Query: 239 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctcc 298 ||||||||||| ||||| ||||| || ||||| | | ||| ||||| || ||||||||| Sbjct: 636 gggtactcaaacacaacatctttgcctgaaagctttctgtaaactgctgaaaaggtctcc 577 Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggca 358 | ||| || || |||||||| || ||||| ||||||||||| | ||| || | ||||| Sbjct: 576 aacttatactctgtgttgtttcgttccttggggtccaagtacaccttcattatcttggag 517 Query: 359 ccatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctcc 418 ||||| | || ||||| |||||||| |||||||| || ||| || | ||||||| Sbjct: 516 ccatcaacgcgatacctagtacgcttcccaacaatctctgcagggacaaccaaatcctcc 457 Query: 419 aagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaaccc 478 || || |||||||||||| ||| || ||||||||||| || || ||| |||| ||||| Sbjct: 456 aatatggcatcatgaacagatgtaagagttctggtgcggggtcgttgagcagctgaacct 397 Query: 479 ttcttgggtggcctnacaatccttcttgttgcaacaaagacaacatncttgccgctaaac 538 |||| || || || || ||||| || || |||| ||||| |||| |||||| || || Sbjct: 396 ctcttaggaggtctcactatcctcctggtggcaataaagatcacatccttgccactgaat 337 Query: 539 ttnttctcca 548 || ||||||| Sbjct: 336 ttcttctcca 327
>dbj|AP004915.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT16G15, TM0073, complete sequence Length = 90077 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 293 gtctccagcttgtattcagtgttgttgcgctcctttgggtccaag 337 |||||||||||||| ||||||||||| || ||||||||||||||| Sbjct: 14987 gtctccagcttgtactcagtgttgtttcgttcctttgggtccaag 14943 Score = 44.1 bits (22), Expect = 0.50 Identities = 88/110 (80%) Strand = Plus / Minus Query: 383 ttccccacaatctcagctgggtacacaacatcctccaagataccatcatgaacagctgtc 442 ||||| ||||||||||| || | || |||||||||| || | ||||||||||| || Sbjct: 14748 ttcccaacaatctcagcaggcaatacgacatcctccagcattgcttcatgaacagcggtg 14689 Query: 443 agggttctggtgcgagggcgctgaacagcggaacccttcttgggtggcct 492 ||||| | |||||| || || ||| |||| ||||| ||||| |||||||| Sbjct: 14688 agggtacgggtgcggggacgttgagcagctgaacctttctttggtggcct 14639
>gb|DQ241830.1| Solanum tuberosum clone 174B09 40S ribosomal protein S7-like protein-like mRNA, complete cds Length = 894 Score = 65.9 bits (33), Expect = 1e-07 Identities = 240/310 (77%) Strand = Plus / Minus Query: 239 gggtactcaaagacaacgtctttcccgcaaagcctgcggtagactgcagagaaggtctcc 298 ||||||||||| ||||| ||||| || ||||| | | ||| ||||| || ||||||||| Sbjct: 643 gggtactcaaacacaacatctttgcctgaaagctttctgtaaactgctgaaaaggtctcc 584 Query: 299 agcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgaccttggca 358 | ||| || || |||||||| || ||||| ||||||||||| | ||| || | ||||| Sbjct: 583 aacttatactctgtgttgtttcgttccttggggtccaagtacaccttcattatcttggag 524 Query: 359 ccatccaaacggtacctgacgcgcttccccacaatctcagctgggtacacaacatcctcc 418 ||||| | || ||||| |||||||| |||||||| || ||| || | ||||||| Sbjct: 523 ccatcaacgcgatacctagtacgcttcccaacaatctctgcagggacaaccaaatcctcc 464 Query: 419 aagataccatcatgaacagctgtcagggttctggtgcgagggcgctgaacagcggaaccc 478 || || |||||||||||| ||| || ||||||||||| || || ||| |||| ||||| Sbjct: 463 aatatggcatcatgaacagatgtaagagttctggtgcggggtcgttgagcagctgaacct 404 Query: 479 ttcttgggtggcctnacaatccttcttgttgcaacaaagacaacatncttgccgctaaac 538 |||| || || || || ||||| || || |||| ||||| |||| |||||| || || Sbjct: 403 ctcttaggaggtctcactatcctcctggtggcaataaagatcacatccttgccactgaat 344 Query: 539 ttnttctcca 548 || ||||||| Sbjct: 343 ttcttctcca 334
>gb|DQ377970.1| Populus x canadensis putative 40S ribosomal protein S7 mRNA, partial cds Length = 546 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 308 tcagtgttgttgcgctcctttgggtccaagtagatcttg 346 |||||||||||||||||||| || |||||| |||||||| Sbjct: 544 tcagtgttgttgcgctccttgggatccaagaagatcttg 506 Score = 46.1 bits (23), Expect = 0.13 Identities = 40/46 (86%) Strand = Plus / Minus Query: 458 gggcgctgaacagcggaacccttcttgggtggcctnacaatccttc 503 |||||||||||||| || || ||||||||||| | |||||||||| Sbjct: 394 gggcgctgaacagcagagcctttcttgggtggacgcacaatccttc 349
>gb|AY086866.1| Arabidopsis thaliana clone 28739 mRNA, complete sequence Length = 841 Score = 50.1 bits (25), Expect = 0.008 Identities = 36/40 (90%) Strand = Plus / Minus Query: 473 gaacccttcttgggtggcctnacaatccttcttgttgcaa 512 |||||||||||||| ||||| |||||||| ||||| |||| Sbjct: 427 gaacccttcttgggcggcctcacaatcctccttgtagcaa 388
>gb|AF144752.1|AF144752 Brassica oleracea 40S ribosomal protein S7 homolog mRNA, complete cds Length = 798 Score = 50.1 bits (25), Expect = 0.008 Identities = 91/113 (80%) Strand = Plus / Minus Query: 293 gtctccagcttgtattcagtgttgttgcgctcctttgggtccaagtagatcttgatgacc 352 ||||| |||||||| ||||||||||| | |||||| || ||||| || | ||| |||| | Sbjct: 587 gtctcaagcttgtactcagtgttgttcctctccttaggctccaaatacaccttcatgatc 528 Query: 353 ttggcaccatccaaacggtacctgacgcgcttccccacaatctcagctgggta 405 |||| ||||| | |||||| ||| ||||| || ||||||||||| ||||| Sbjct: 527 ttggtgccatcaacacggtatctggtacgctttccaacaatctcagcagggta 475
>ref|NM_121618.2| Arabidopsis thaliana structural constituent of ribosome AT5G16130 mRNA, complete cds Length = 878 Score = 48.1 bits (24), Expect = 0.032 Identities = 79/99 (79%) Strand = Plus / Minus Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaagacaac 522 ||||||||| | |||||||||||| || | | ||||||||||| | |||||||| ||| Sbjct: 465 ctgaacagcagcacccttcttggggggacgcatgatccttcttgtggtaacaaagataac 406 Query: 523 atncttgccgctaaacttnttctccagntncctgacgag 561 || ||| || || ||||| ||||| || | |||||||| Sbjct: 405 atcctttccactgaacttcttctcaagctctctgacgag 367
>gb|BT024914.1| Arabidopsis thaliana At5g16130 mRNA, complete cds Length = 573 Score = 48.1 bits (24), Expect = 0.032 Identities = 79/99 (79%) Strand = Plus / Minus Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaagacaac 522 ||||||||| | |||||||||||| || | | ||||||||||| | |||||||| ||| Sbjct: 336 ctgaacagcagcacccttcttggggggacgcatgatccttcttgtggtaacaaagataac 277 Query: 523 atncttgccgctaaacttnttctccagntncctgacgag 561 || ||| || || ||||| ||||| || | |||||||| Sbjct: 276 atcctttccactgaacttcttctcaagctctctgacgag 238
>emb|BX832565.1|CNS09ZKS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH80ZG09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 797 Score = 48.1 bits (24), Expect = 0.032 Identities = 79/99 (79%) Strand = Plus / Minus Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaagacaac 522 ||||||||| | |||||||||||| || | | ||||||||||| | |||||||| ||| Sbjct: 391 ctgaacagcagcacccttcttggggggacgcatgatccttcttgtggtaacaaagataac 332 Query: 523 atncttgccgctaaacttnttctccagntncctgacgag 561 || ||| || || ||||| ||||| || | |||||||| Sbjct: 331 atcctttccactgaacttcttctcaagctctctgacgag 293
>gb|AY086292.1| Arabidopsis thaliana clone 23518 mRNA, complete sequence Length = 872 Score = 48.1 bits (24), Expect = 0.032 Identities = 79/99 (79%) Strand = Plus / Minus Query: 463 ctgaacagcggaacccttcttgggtggcctnacaatccttcttgttgcaacaaagacaac 522 ||||||||| | |||||||||||| || | | ||||||||||| | |||||||| ||| Sbjct: 465 ctgaacagcagcacccttcttggggggacgcatgatccttcttgtggtaacaaagataac 406 Query: 523 atncttgccgctaaacttnttctccagntncctgacgag 561 || ||| || || ||||| ||||| || | |||||||| Sbjct: 405 atcctttccactgaacttcttctcaagctctctgacgag 367
>gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence Length = 146078 Score = 44.1 bits (22), Expect = 0.50 Identities = 88/110 (80%) Strand = Plus / Minus Query: 374 ctgacgcgcttccccacaatctcagctgggtacacaacatcctccaagataccatcatga 433 |||| ||||||||| |||||||| || || ||||||||||||| | | | ||||| Sbjct: 143226 ctgatgcgcttcccgacaatctcggcaggaaacacaacatcctcgagcgtggcttcatgg 143167 Query: 434 acagctgtcagggttctggtgcgagggcgctgaacagcggaacccttctt 483 ||||| ||||| ||||||||||| || | |||||||| || |||||||| Sbjct: 143166 acagcggtcagagttctggtgcgtggcctttgaacagcagatcccttctt 143117
>ref|NM_103777.2| Arabidopsis thaliana structural constituent of ribosome AT1G48830 transcript variant AT1G48830.1 mRNA, complete cds Length = 842 Score = 42.1 bits (21), Expect = 2.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 473 gaacccttcttgggtggcctnacaatccttcttgttgcaa 512 ||||||||||| || ||||| |||||||| ||||| |||| Sbjct: 429 gaacccttctttggcggcctcacaatcctccttgtagcaa 390
>ref|NM_179455.2| Arabidopsis thaliana structural constituent of ribosome AT1G48830 transcript variant AT1G48830.2 mRNA, complete cds Length = 837 Score = 42.1 bits (21), Expect = 2.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 473 gaacccttcttgggtggcctnacaatccttcttgttgcaa 512 ||||||||||| || ||||| |||||||| ||||| |||| Sbjct: 369 gaacccttctttggcggcctcacaatcctccttgtagcaa 330
>emb|CR940311.11| M.truncatula DNA sequence from clone MTH2-17E17 on chromosome 3, complete sequence Length = 122868 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 284 gcagagaaggtctccagcttgtattcagtgttgttgcgctcctttgggtccaa 336 ||||| || ||||||| |||||||| || ||||| | ||||||||||||||| Sbjct: 46348 gcagaaaacgtctccaatttgtattcggtattgtttctctcctttgggtccaa 46296
>ref|XM_651851.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (6.t00008) partial mRNA Length = 8574 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 142 atagcacaactaactgaagcatcaa 166 |||| |||||||||||||||||||| Sbjct: 3728 ataggacaactaactgaagcatcaa 3704
>gb|AY072617.1| Arabidopsis thaliana At1g48830/T24P22_5 mRNA, complete cds Length = 576 Score = 42.1 bits (21), Expect = 2.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 473 gaacccttcttgggtggcctnacaatccttcttgttgcaa 512 ||||||||||| || ||||| |||||||| ||||| |||| Sbjct: 326 gaacccttctttggcggcctcacaatcctccttgtagcaa 287
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 498 tccttcttgttgcaacaaagacaac 522 |||||||||||||| |||||||||| Sbjct: 1001617 tccttcttgttgcatcaaagacaac 1001641
>gb|AF412048.1|AF412048 Arabidopsis thaliana At1g48830/T24P22_5 mRNA, complete cds Length = 814 Score = 42.1 bits (21), Expect = 2.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 473 gaacccttcttgggtggcctnacaatccttcttgttgcaa 512 ||||||||||| || ||||| |||||||| ||||| |||| Sbjct: 423 gaacccttctttggcggcctcacaatcctccttgtagcaa 384
>gb|AC073555.9|AC073555 Arabidopsis thaliana chromosome 1 BAC F11I4 genomic sequence, complete sequence Length = 80561 Score = 42.1 bits (21), Expect = 2.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 473 gaacccttcttgggtggcctnacaatccttcttgttgcaa 512 ||||||||||| || ||||| |||||||| ||||| |||| Sbjct: 1857 gaacccttctttggcggcctcacaatcctccttgtagcaa 1818
>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete sequence Length = 18062 Score = 42.1 bits (21), Expect = 2.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 473 gaacccttcttgggtggcctnacaatccttcttgttgcaa 512 ||||||||||| || ||||| |||||||| ||||| |||| Sbjct: 15546 gaacccttctttggcggcctcacaatcctccttgtagcaa 15507
>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence Length = 180573 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tcataatttaaatgctcaaaa 54 ||||||||||||||||||||| Sbjct: 109493 tcataatttaaatgctcaaaa 109473
>gb|AC151390.3| Oryctolagus cuniculus clone LB1-118M16, complete sequence Length = 41753 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 498 tccttcttgttgcaacaaagacaac 522 |||||||||||||| |||||||||| Sbjct: 37703 tccttcttgttgcatcaaagacaac 37727
>dbj|AP005120.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-513M1, complete sequences Length = 125561 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 tcataatttaaatgctcaaaa 54 ||||||||||||||||||||| Sbjct: 85452 tcataatttaaatgctcaaaa 85472
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cttccccacaatctcagctg 401 |||||||||||||||||||| Sbjct: 313603 cttccccacaatctcagctg 313622
>gb|BC041282.1| Xenopus laevis ribosomal protein S8 (rpS8B), mRNA (cDNA clone MGC:53555 IMAGE:4681493), complete cds Length = 660 Score = 40.1 bits (20), Expect = 7.8 Identities = 30/34 (88%) Strand = Plus / Minus Query: 515 aagacaacatncttgccgctaaacttnttctcca 548 |||||||||| ||||||||||| || ||||||| Sbjct: 306 aagacaacatgtttgccgctaaatttcttctcca 273
>gb|BC041307.1| Xenopus laevis ribosomal protein S8, mRNA (cDNA clone MGC:53608 IMAGE:4684065), complete cds Length = 650 Score = 40.1 bits (20), Expect = 7.8 Identities = 30/34 (88%) Strand = Plus / Minus Query: 515 aagacaacatncttgccgctaaacttnttctcca 548 |||||||||| ||||||||||| || ||||||| Sbjct: 291 aagacaacatgtttgccgctaaatttcttctcca 258
>ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06084) partial mRNA Length = 1296 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cataatttaaatgctcaaaa 54 |||||||||||||||||||| Sbjct: 760 cataatttaaatgctcaaaa 741
>emb|AL391812.7| Human DNA sequence from clone RP13-94I22 on chromosome 10 Contains part of the MYO3A gene for myosin IIIA, complete sequence Length = 61212 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ttcattgccatctccatcaa 91 |||||||||||||||||||| Sbjct: 34333 ttcattgccatctccatcaa 34314
>gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 of the complete genome Length = 300923 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaacttta 59 ||||||||||||| |||||||||| Sbjct: 287383 ataatttaaatgcacaaaacttta 287360
>emb|V01442.1|XLRIB5 Fragment of Xenopus laevis mRNA for ribosomal protein S8 Length = 512 Score = 40.1 bits (20), Expect = 7.8 Identities = 30/34 (88%) Strand = Plus / Minus Query: 515 aagacaacatncttgccgctaaacttnttctcca 548 |||||||||| ||||||||||| || ||||||| Sbjct: 228 aagacaacatgtttgccgctaaatttcttctcca 195
>gb|AC040917.6| Homo sapiens chromosome 8, clone RP11-1M21, complete sequence Length = 158031 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 aaactatgtttctggaatacattg 141 |||||||||| ||||||||||||| Sbjct: 73158 aaactatgttgctggaatacattg 73181
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ataatttaaatgctcaaaacttta 59 ||||||||||||| |||||||||| Sbjct: 551314 ataatttaaatgcacaaaacttta 551337
>gb|AC069506.14| Homo sapiens 3 BAC RP11-321G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131274 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cgttcataatttaaatgctc 50 |||||||||||||||||||| Sbjct: 90584 cgttcataatttaaatgctc 90603
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaacttta 59 ||||||||||||| |||||||||| Sbjct: 289969 ataatttaaatgcacaaaacttta 289946
>gb|AC079384.26| Homo sapiens 12 BAC RP11-148B3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180555 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 cagcttgtattcagtgttgttgcg 321 ||||||||||||||||||| |||| Sbjct: 85208 cagcttgtattcagtgttgctgcg 85185
>gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence Length = 115421 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 caagataccatcatgaacag 437 |||||||||||||||||||| Sbjct: 41671 caagataccatcatgaacag 41652
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 ataatttaaatgctcaaaacttta 59 ||||||||||||| |||||||||| Sbjct: 289591 ataatttaaatgcacaaaacttta 289568
>gb|AF056316.1|AF056316 Avicennia marina 40S ribosome protein S7 mRNA, complete cds Length = 833 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcaaagacaacgtctttccc 264 |||||||||||||||||||| Sbjct: 619 tcaaagacaacgtctttccc 600
>gb|AF098519.1|AF098519 Avicennia marina unknown mRNA Length = 833 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcaaagacaacgtctttccc 264 |||||||||||||||||||| Sbjct: 619 tcaaagacaacgtctttccc 600
>gb|AF207953.5| Homo sapiens chromosome 8 clone CTA-389B map q21.13, complete sequence Length = 112288 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 aaactatgtttctggaatacattg 141 |||||||||| ||||||||||||| Sbjct: 86867 aaactatgttgctggaatacattg 86890
>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete sequence Length = 141401 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tttaacattgttcacgttca 75 |||||||||||||||||||| Sbjct: 44763 tttaacattgttcacgttca 44744
>gb|M21486.1|XELRPS8B X.laevis ribosomal protein S8 (rpS8B) mRNA, complete cds Length = 638 Score = 40.1 bits (20), Expect = 7.8 Identities = 30/34 (88%) Strand = Plus / Minus Query: 515 aagacaacatncttgccgctaaacttnttctcca 548 |||||||||| ||||||||||| || ||||||| Sbjct: 289 aagacaacatgtttgccgctaaatttcttctcca 256
>gb|M21485.1|XELRPS8A X.laevis ribosomal protein S8 (rpS8A) mRNA, complete cds Length = 671 Score = 40.1 bits (20), Expect = 7.8 Identities = 30/34 (88%) Strand = Plus / Minus Query: 515 aagacaacatncttgccgctaaacttnttctcca 548 |||||||||| ||||||||||| || ||||||| Sbjct: 318 aagacaacatgtttgccgctaaatttcttctcca 285
>emb|AL691430.6| Mouse DNA sequence from clone RP23-206C1 on chromosome 2, complete sequence Length = 119748 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 tgttgcaacaaagacaacat 524 |||||||||||||||||||| Sbjct: 26515 tgttgcaacaaagacaacat 26534 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,513,257 Number of Sequences: 3902068 Number of extensions: 4513257 Number of successful extensions: 83057 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82718 Number of HSP's gapped (non-prelim): 318 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
