>HOW_DROME (O01367) Protein held out wings (KH-domain protein KH93F) (Putative|
           RNA-binding protein) (Protein muscle-specific) (Protein
           wings held out) (Protein struthio) (Quaking-related 93F)
          Length = 405

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 28/66 (42%), Positives = 41/66 (62%)
 Frame = -3

Query: 680 KPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAML 501
           KP +EHL++ LH+L+  E        +L QA   ++ LL P  E +D  KK+QL ELA++
Sbjct: 196 KPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAII 255

Query: 500 NGTLRE 483
           NGT R+
Sbjct: 256 NGTYRD 261

>GLD1_CAEEL (Q17339) Female germline-specific tumor suppressor gld-1 (Defective|
           in germ line development protein 1)
          Length = 463

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 27/65 (41%), Positives = 39/65 (60%)
 Frame = -3

Query: 680 KPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAML 501
           K  +EHL + LH+LV+ E     +  +L  A E ++ LL P  E  D  K++QL ELA++
Sbjct: 264 KANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAII 323

Query: 500 NGTLR 486
           NGT R
Sbjct: 324 NGTYR 328

>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 27/60 (45%), Positives = 37/60 (61%)
 Frame = -3

Query: 659 NEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNGTLREE 480
           +EPLH LV A   +E +   + Q R IL+  +   ++  D  +K QLRELA LNGTLRE+
Sbjct: 200 DEPLHALVTANT-MENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257

>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian
           branch point-binding protein mBBP) (BBP)
          Length = 639

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 27/60 (45%), Positives = 37/60 (61%)
 Frame = -3

Query: 659 NEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNGTLREE 480
           +EPLH LV A   +E +   + Q R IL+  +   ++  D  +K QLRELA LNGTLRE+
Sbjct: 200 DEPLHALVTANT-MENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257

>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5|
           protein)
          Length = 476

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/66 (37%), Positives = 38/66 (57%)
 Frame = -3

Query: 677 PGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLN 498
           PG  +  +PLH L+ A+   +I     +    +++ +  P  E Q+  K+ QLRELA LN
Sbjct: 206 PGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSP--EGQNDLKRGQLRELAELN 263

Query: 497 GTLREE 480
           GTLRE+
Sbjct: 264 GTLRED 269

>KHDR3_RAT (Q9JLP1) KH domain-containing, RNA binding, signal|
           transduction-associated protein 3 (Sam68-like mammalian
           protein 2) (SLM-2) (rSLM-2)
          Length = 346

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = -3

Query: 671 YEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNG 495
           Y HLN+ LH+L+E   P     AR+  A E ++  L P  +  D  ++ QL+EL  LNG
Sbjct: 120 YFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176

>KHDR3_MOUSE (Q9R226) KH domain-containing, RNA binding, signal|
           transduction-associated protein 3 (Sam68-like mammalian
           protein 2) (SLM-2) (RNA-binding protein Etoile)
          Length = 346

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = -3

Query: 671 YEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNG 495
           Y HLN+ LH+L+E   P     AR+  A E ++  L P  +  D  ++ QL+EL  LNG
Sbjct: 120 YFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176

>KHDR3_HUMAN (O75525) KH domain-containing, RNA binding, signal|
           transduction-associated protein 3 (Sam68-like mammalian
           protein 2) (SLM-2) (Sam68-like phosphotyrosine protein)
           (RNA-binding protein T-Star)
          Length = 346

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = -3

Query: 671 YEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNG 495
           Y HLN+ LH+L+E   P     AR+  A E ++  L P  +  D  ++ QL+EL  LNG
Sbjct: 120 YFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176

>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (Src-associated in
           mitosis 68 kDa protein) (Sam68)
          Length = 433

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = -3

Query: 677 PGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLN 498
           P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  EL+ LN
Sbjct: 201 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 258

Query: 497 G----TLREEGMQRSGSASP 450
           G    T    G  R   A+P
Sbjct: 259 GVPEPTRGRGGPVRGRGAAP 278

>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -3

Query: 677 PGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLN 498
           P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  EL+ LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275

Query: 497 G 495
           G
Sbjct: 276 G 276

>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -3

Query: 677 PGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLN 498
           P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  EL+ LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275

Query: 497 G 495
           G
Sbjct: 276 G 276

>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -3

Query: 677 PGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLN 498
           P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  EL+ LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275

Query: 497 G 495
           G
Sbjct: 276 G 276

>KRA61_RABIT (Q02957) Keratin, glycine/tyrosine-rich of hair|
          Length = 79

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 229 FGYGKTGCRLSSYLS-GCARSGLCIAMSYDWGFDLRFLC 116
           +GYG  GC L SY   G  R G      Y +G+  R LC
Sbjct: 23  YGYGGLGCGLGSYYGCGYRRLGCGYGCGYGYGYGSRSLC 61

>IPL1_CANAL (Q59S66) Spindle assembly checkpoint kinase (EC 2.7.11.1) (Aurora|
           kinase)
          Length = 530

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
 Frame = +1

Query: 19  IXSIKQYYNCNKLQHFKPK*HNQLKFF---KSSNTSTRTLNQNPSHSS*QYTNHFLH--- 180
           +  I   +  +K QH KP  H+        K+ NT+T T   N + ++ QY N  L+   
Sbjct: 39  LAPINSEFKISKPQHIKPNTHSHTFTTPTPKTRNTATTTTTNNNNRNNHQYRNPNLNTSL 98

Query: 181 --NPINSSTVDTQSFHNQT 231
              P  +S+  + S H+ +
Sbjct: 99  VFTPTKNSSSSSSSSHSSS 117

>EAF5_YEAST (P39995) Chromatin modification-related protein EAF5|
           (ESA1-associated factor 5)
          Length = 279

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 578 LEDLLRPMDESQDFFKKQQLRELAMLNGTLREEGMQRSGSASPFHNSLG 432
           + D+ + +DE  D FKK Q+ ++ M+   + + G++   S    H + G
Sbjct: 107 MHDIEKLLDEKYDRFKKTQVEQIRMMEDEILKNGIKTGASQLQPHANAG 155

>MYH9_RAT (Q62812) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle|
            myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA)
            (Cellular myosin heavy chain, type A) (Nonmuscle myosin
            heavy chain-A) (NMMHC-A)
          Length = 1960

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -3

Query: 680  KPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAML 501
            K   E L + L    +A+L +E+    L   +   E  L+  DE  +  KKQ +R++  +
Sbjct: 1538 KTQLEELEDELQATEDAKLRLEV---NLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREM 1594

Query: 500  NGTLREEGMQRS 465
               L +E  QRS
Sbjct: 1595 EAELEDERKQRS 1606

>MYH9_MOUSE (Q8VDD5) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle|
            myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA)
            (Cellular myosin heavy chain, type A) (Nonmuscle myosin
            heavy chain-A) (NMMHC-A)
          Length = 1959

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -3

Query: 680  KPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAML 501
            K   E L + L    +A+L +E+    L   +   E  L+  DE  +  KKQ +R++  +
Sbjct: 1537 KTQLEELEDELQATEDAKLRLEV---NLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREM 1593

Query: 500  NGTLREEGMQRS 465
               L +E  QRS
Sbjct: 1594 EAELEDERKQRS 1605

>MYH9_HUMAN (P35579) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle|
            myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA)
            (Cellular myosin heavy chain, type A) (Nonmuscle myosin
            heavy chain-A) (NMMHC-A)
          Length = 1959

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -3

Query: 680  KPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAML 501
            K   E L + L    +A+L +E+    L   +   E  L+  DE  +  KKQ +R++  +
Sbjct: 1537 KTQLEELEDELQATEDAKLRLEV---NLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREM 1593

Query: 500  NGTLREEGMQRS 465
               L +E  QRS
Sbjct: 1594 EAELEDERKQRS 1605


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,373,913
Number of Sequences: 219361
Number of extensions: 1772169
Number of successful extensions: 4852
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4849
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)