ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23o07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ555613.1|HVU555613 Hordeum vulgare subsp. vulgare mRNA for... 68 1e-08
2emb|AL356603.11| Human DNA sequence from clone RP11-500B2 on chr... 44 0.17
3gb|AC116875.10| Mus musculus chromosome 8, clone RP24-426B21, co... 42 0.68
4ref|XM_524086.1| PREDICTED: Pan troglodytes similar to LP2698 (L... 40 2.7
5dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 2.7

>emb|AJ555613.1|HVU555613 Hordeum vulgare subsp. vulgare mRNA for metallothionein-like
           protein type 3 (mt-3a gene)
          Length = 334

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                             
Query: 178 acggcaacaacacaacagacgtagacaaacgcac 211
           ||||||||||||||||||||||||||||||||||
Sbjct: 334 acggcaacaacacaacagacgtagacaaacgcac 301



to top

>emb|AL356603.11| Human DNA sequence from clone RP11-500B2 on chromosome 10 Contains part
             of the INPP5A gene for inositol
             polyphosphate-5-phosphatase 40kDa and two CpG islands,
             complete sequence
          Length = 112648

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 79    tgcaaacctgaagctcagccac 100
             ||||||||||||||||||||||
Sbjct: 14979 tgcaaacctgaagctcagccac 15000



to top

>gb|AC116875.10| Mus musculus chromosome 8, clone RP24-426B21, complete sequence
          Length = 188938

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     ctcagccactggttacagggg 112
              |||||||||||||||||||||
Sbjct: 101307 ctcagccactggttacagggg 101327



to top

>ref|XM_524086.1| PREDICTED: Pan troglodytes similar to LP2698 (LOC468699), mRNA
          Length = 870

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  tcagccactggttacagggg 112
           ||||||||||||||||||||
Sbjct: 374 tcagccactggttacagggg 393



to top

>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 178     acggcaacaacacaacagacgtagacaa 205
               |||||||||||||| |||||||| ||||
Sbjct: 2980129 acggcaacaacacagcagacgtatacaa 2980102


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,388,931
Number of Sequences: 3902068
Number of extensions: 1388931
Number of successful extensions: 108829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108804
Number of HSP's gapped (non-prelim): 25
length of query: 211
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 189
effective length of database: 17,147,199,772
effective search space: 3240820756908
effective search space used: 3240820756908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top