ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal23n15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470038.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1001 Score = 194 bits (98), Expect = 2e-46 Identities = 158/178 (88%) Strand = Plus / Minus Query: 345 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 404 |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 609 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 550 Query: 405 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 464 ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| || Sbjct: 549 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 490 Query: 465 cttcttgatccatttcccgtacaagctaagcctggttatcatcactcgctctgcaagc 522 |||||||||||||| | ||||||| |||||| |||||||||||||||||||||||| Sbjct: 489 tttcttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagc 432
>dbj|AK070287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049O16, full insert sequence Length = 983 Score = 194 bits (98), Expect = 2e-46 Identities = 158/178 (88%) Strand = Plus / Minus Query: 345 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 404 |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 739 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 680 Query: 405 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 464 ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| || Sbjct: 679 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 620 Query: 465 cttcttgatccatttcccgtacaagctaagcctggttatcatcactcgctctgcaagc 522 |||||||||||||| | ||||||| |||||| |||||||||||||||||||||||| Sbjct: 619 tttcttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagc 562
>dbj|AK060962.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-A06, full insert sequence Length = 1220 Score = 194 bits (98), Expect = 2e-46 Identities = 158/178 (88%) Strand = Plus / Minus Query: 345 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 404 |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 841 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 782 Query: 405 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 464 ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| || Sbjct: 781 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 722 Query: 465 cttcttgatccatttcccgtacaagctaagcctggttatcatcactcgctctgcaagc 522 |||||||||||||| | ||||||| |||||| |||||||||||||||||||||||| Sbjct: 721 tttcttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagc 664
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 345 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 404 |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 33469278 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 33469219 Query: 405 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 461 ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| Sbjct: 33469218 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 33469162 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 468 cttgatccatttcccgtacaagctaagcctggttatcatcactcgctctgcaagc 522 |||||||||||| | ||||||| |||||| |||||||||||||||||||||||| Sbjct: 33469070 cttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagc 33469016
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Plus Query: 345 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 404 |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 28833 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 28892 Query: 405 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 461 ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| Sbjct: 28893 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 28949 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 468 cttgatccatttcccgtacaagctaagcctggttatcatcactcgctctgcaagc 522 |||||||||||| | ||||||| |||||| |||||||||||||||||||||||| Sbjct: 29041 cttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagc 29095
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 345 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 404 |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 33559788 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 33559729 Query: 405 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 461 ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| Sbjct: 33559728 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 33559672 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 468 cttgatccatttcccgtacaagctaagcctggttatcatcactcgctctgcaagc 522 |||||||||||| | ||||||| |||||| |||||||||||||||||||||||| Sbjct: 33559580 cttgatccatttgctgtacaagtgaagcctagttatcatcactcgctctgcaagc 33559526
>ref|XM_478766.1| Oryza sativa (japonica cultivar-group), mRNA Length = 821 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 417 ctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgcacttcttgatcca 476 |||||| ||||| | ||| |||||||||||||| || || ||||| || ||||||||||| Sbjct: 571 ctccagattctcattcgaaatcttctcgtacatttttgcatggtcacatttcttgatcca 512 Query: 477 tttcccgtacaag 489 ||| | ||||||| Sbjct: 511 tttgctgtacaag 499
>dbj|AK067599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109B01, full insert sequence Length = 820 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 417 ctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgcacttcttgatcca 476 |||||| ||||| | ||| |||||||||||||| || || ||||| || ||||||||||| Sbjct: 570 ctccagattctcattcgaaatcttctcgtacatttttgcatggtcacatttcttgatcca 511 Query: 477 tttcccgtacaag 489 ||| | ||||||| Sbjct: 510 tttgctgtacaag 498
>ref|NM_121991.2| Arabidopsis thaliana unknown protein AT5G19855 mRNA, complete cds Length = 941 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Minus Query: 448 atcttcgcgtggtcgcacttcttgatccatttcccgtacaagctaagcctggttatcatc 507 |||||| | |||||||| |||||||||||||| || |||||| ||| | || |||||| Sbjct: 653 atcttcccatggtcgcatttcttgatccatttgccatacaagtgaagacgcgtgatcatc 594 Query: 508 actcgctctgcaagc 522 |||| ||||||||| Sbjct: 593 actctttctgcaagc 579
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 411 catcagctccaggttctcctccg 433 ||||||||||||||||||||||| Sbjct: 2436924 catcagctccaggttctcctccg 2436946
>gb|BT005149.1| Arabidopsis thaliana clone U20491 unknown protein (At5g19855) mRNA, complete cds Length = 643 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Minus Query: 448 atcttcgcgtggtcgcacttcttgatccatttcccgtacaagctaagcctggttatcatc 507 |||||| | |||||||| |||||||||||||| || |||||| ||| | || |||||| Sbjct: 518 atcttcccatggtcgcatttcttgatccatttgccatacaagtgaagacgcgtgatcatc 459 Query: 508 actcgctctgcaagc 522 |||| ||||||||| Sbjct: 458 actctttctgcaagc 444
>gb|BT004014.1| Arabidopsis thaliana clone RAFL15-10-J17 (R20491) unknown protein (At5g19855) mRNA, complete cds Length = 926 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Minus Query: 448 atcttcgcgtggtcgcacttcttgatccatttcccgtacaagctaagcctggttatcatc 507 |||||| | |||||||| |||||||||||||| || |||||| ||| | || |||||| Sbjct: 620 atcttcccatggtcgcatttcttgatccatttgccatacaagtgaagacgcgtgatcatc 561 Query: 508 actcgctctgcaagc 522 |||| ||||||||| Sbjct: 560 actctttctgcaagc 546
>gb|AY088169.1| Arabidopsis thaliana clone 42402 mRNA, complete sequence Length = 939 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Minus Query: 448 atcttcgcgtggtcgcacttcttgatccatttcccgtacaagctaagcctggttatcatc 507 |||||| | |||||||| |||||||||||||| || |||||| ||| | || |||||| Sbjct: 653 atcttcccatggtcgcatttcttgatccatttgccatacaagtgaagacgcgtgatcatc 594 Query: 508 actcgctctgcaagc 522 |||| ||||||||| Sbjct: 593 actctttctgcaagc 579
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 411 catcagctccaggttctcctcc 432 |||||||||||||||||||||| Sbjct: 315014 catcagctccaggttctcctcc 314993
>gb|AY020312.1| Oryza sativa microsatellite MRG2637 containing (GA)X13, genomic sequence Length = 226 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 cctctcccgcatcagctccag 422 ||||||||||||||||||||| Sbjct: 24 cctctcccgcatcagctccag 44
>emb|BX957235.12| Zebrafish DNA sequence from clone DKEY-84K17 in linkage group 17, complete sequence Length = 171764 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 acattatatacacatgtttga 233 ||||||||||||||||||||| Sbjct: 9661 acattatatacacatgtttga 9681
>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete sequence Length = 190724 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 gtgcgtgcatgcatgcatagt 261 ||||||||||||||||||||| Sbjct: 91781 gtgcgtgcatgcatgcatagt 91801
>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence Length = 164572 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cctctcccgcatcagctccag 422 ||||||||||||||||||||| Sbjct: 33138 cctctcccgcatcagctccag 33118
>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence Length = 210186 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 tcgtgcgtgcatgcatgcata 259 ||||||||||||||||||||| Sbjct: 20422 tcgtgcgtgcatgcatgcata 20402
>dbj|AK055547.1| Homo sapiens cDNA FLJ30985 fis, clone HHDPC2000462 Length = 2386 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 tcagctccaggttctcctccg 433 ||||||||||||||||||||| Sbjct: 646 tcagctccaggttctcctccg 666
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 cctctcccgcatcagctccag 422 ||||||||||||||||||||| Sbjct: 28757820 cctctcccgcatcagctccag 28757840 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgtgcgtgcatgcatgcata 259 |||||||||||||||||||| Sbjct: 19360696 cgtgcgtgcatgcatgcata 19360677
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 cctctcccgcatcagctccag 422 ||||||||||||||||||||| Sbjct: 2075073 cctctcccgcatcagctccag 2075093 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 attatatacacatgtttgactcaa 238 |||||||||||||||||| ||||| Sbjct: 19030412 attatatacacatgtttgtctcaa 19030435
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cgtgcgtgcatgcatgcatag 260 ||||||||||||||||||||| Sbjct: 22090139 cgtgcgtgcatgcatgcatag 22090159
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cgtgcgtgcatgcatgcatag 260 ||||||||||||||||||||| Sbjct: 64038 cgtgcgtgcatgcatgcatag 64058
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 cctctcccgcatcagctccag 422 ||||||||||||||||||||| Sbjct: 95935 cctctcccgcatcagctccag 95955
>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete sequence Length = 205515 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 tcgtgcgtgcatgcatgcata 259 ||||||||||||||||||||| Sbjct: 102681 tcgtgcgtgcatgcatgcata 102661
>ref|XM_520379.1| PREDICTED: Pan troglodytes LOC464874 (LOC464874), mRNA Length = 2279 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 1349 cagctccaggttctcctccg 1330
>gb|AC158556.9| Mus musculus chromosome 15, clone RP23-140F20, complete sequence Length = 203053 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 tcacatacgtacattatatacaca 226 |||||||| ||||||||||||||| Sbjct: 79981 tcacatacatacattatatacaca 80004
>emb|Z78541.1|CEF19D8 Caenorhabditis elegans Cosmid F19D8, complete sequence Length = 29400 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 gatgagctaattaattgatgaagt 306 ||||| |||||||||||||||||| Sbjct: 1145 gatgatctaattaattgatgaagt 1168
>gb|AC116033.3| Zea mays genomic clone ZM15C05 sequence, complete sequence Length = 99606 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 gcgaatggcacgaagcagtttgca 156 ||||||||||||||||||| |||| Sbjct: 78893 gcgaatggcacgaagcagtatgca 78870
>gb|BC064582.1| Homo sapiens KIAA1984, mRNA (cDNA clone IMAGE:5742861), complete cds Length = 1822 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 1048 cagctccaggttctcctccg 1029
>emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on chromosome 9 Contains the 3' end of the gene for a novel protein similar to mouse pancreatitis-induced protein 49 (PIP49), the 5' end of a novel gene (FLJ30346), five novel genes (containing LOC158062, KIAA1984, FLJ35320, FLJ36901, FLJ30985, FLJ10101, FLJ37063 FLJ13045, FLJ40767), a nucleolin (NCL) pseudogene, the gene for a novel protein similar to mouse lipocalin 8 (EP17, Lcn5), a 13kD lysosomal H+ transporting ATPase V1 subunit G isoform 1 (ATP6V1G1) pseudogene, the gene for phosphohistidine phosphatase (PHP14), the gene for a novel protein similar to rat apical early endosomal glycoprotein (LOC252882), the EDF1 gene for endothelial differentiation-related factor 1 (MBF1, EDF-1), the 5' end of the TRAF2 gene for TNF receptor-associated factor 2 (TRAP, TRAP3) and ten CpG islands, complete sequence Length = 182003 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 84616 cagctccaggttctcctccg 84597
>ref|XM_779451.1| PREDICTED: Strongylocentrotus purpuratus similar to potassium voltage-gated channel, subfamily H, member 8 (LOC579331), mRNA Length = 3177 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gatcttctccgtgttggtgt 370 |||||||||||||||||||| Sbjct: 1326 gatcttctccgtgttggtgt 1307
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgtgcgtgcatgcatgcata 259 |||||||||||||||||||| Sbjct: 142528 cgtgcgtgcatgcatgcata 142509
>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14, complete sequence Length = 139855 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgtgcgtgcatgcatgcata 259 |||||||||||||||||||| Sbjct: 11948 cgtgcgtgcatgcatgcata 11929
>emb|AL731658.20| Mouse DNA sequence from clone RP23-329P17 on chromosome 11 Contains the Lif gene for leukemia inhibitory factor, two novel genes, the 3' end of a novel gene and a CpG island, complete sequence Length = 137519 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cagaacacaggcacattatacact 106 |||||||||| ||||||||||||| Sbjct: 130951 cagaacacagccacattatacact 130974
>gb|AC023102.6| Homo sapiens chromosome 8, clone RP11-414L17, complete sequence Length = 175263 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgtgcgtgcatgcatgcata 259 |||||||||||||||||||| Sbjct: 164505 cgtgcgtgcatgcatgcata 164486
>dbj|AK094220.1| Homo sapiens cDNA FLJ36901 fis, clone BRACE2002206 Length = 2124 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 483 cagctccaggttctcctccg 464
>dbj|AK092639.1| Homo sapiens cDNA FLJ35320 fis, clone PROST2012007 Length = 2323 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 1320 cagctccaggttctcctccg 1301
>dbj|AK090683.1| Homo sapiens cDNA FLJ33364 fis, clone BRACE2005448 Length = 1555 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 638 cagctccaggttctcctccg 619
>gb|AC112173.3| Homo sapiens chromosome 5 clone CTD-2275D10, complete sequence Length = 125551 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 tcaatcgtgcgtgcatgcatgcat 258 |||||| ||||||||||||||||| Sbjct: 19274 tcaatcctgcgtgcatgcatgcat 19251
>ref|NM_001039374.3| Homo sapiens KIAA1984 (KIAA1984), mRNA Length = 1740 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 1050 cagctccaggttctcctccg 1031
>gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, complete sequence Length = 157672 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cgtgcgtgcatgcatgcata 259 |||||||||||||||||||| Sbjct: 10847 cgtgcgtgcatgcatgcata 10828
>gb|AC093251.2| Homo sapiens chromosome 5 clone RP11-156N15, complete sequence Length = 62147 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 tcaatcgtgcgtgcatgcatgcat 258 |||||| ||||||||||||||||| Sbjct: 3550 tcaatcctgcgtgcatgcatgcat 3573
>dbj|AK154298.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630016D06 product:unclassifiable, full insert sequence Length = 4040 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tcgtgcgtgcatgcatgcat 258 |||||||||||||||||||| Sbjct: 2727 tcgtgcgtgcatgcatgcat 2708
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cgtgcgtgcatgcatgcata 259 |||||||||||||||||||| Sbjct: 24130000 cgtgcgtgcatgcatgcata 24130019
>dbj|AB074447.1| Macaca fascicularis testis cDNA clone:QtsA-19877, similar to human KIAA1984 protein (KIAA1984), mRNA, NM_032874 Length = 2296 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 1040 cagctccaggttctcctccg 1021
>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0009J19 Length = 156988 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 attatatacacatgtttgactcaa 238 |||||||||||||||||| ||||| Sbjct: 123082 attatatacacatgtttgtctcaa 123105
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1616_B03 Length = 96081 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 attatatacacatgtttgactcaa 238 |||||||||||||||||| ||||| Sbjct: 27896 attatatacacatgtttgtctcaa 27919
>emb|BX469898.9| Zebrafish DNA sequence from clone DKEY-180H12 in linkage group 18, complete sequence Length = 185729 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tcgtgcgtgcatgcatgcat 258 |||||||||||||||||||| Sbjct: 56092 tcgtgcgtgcatgcatgcat 56073
>gb|AY107170.1| Zea mays PCO088271 mRNA sequence Length = 637 Score = 40.1 bits (20), Expect = 7.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 466 ttcttgatccatttcccgtacaagctaagcctggttatcatcac 509 ||||| |||||||||||||||| | ||||||||| | |||||| Sbjct: 636 ttctttatccatttcccgtacaggtgaagcctggtgaccatcac 593
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cgtgcgtgcatgcatgcata 259 |||||||||||||||||||| Sbjct: 24058206 cgtgcgtgcatgcatgcata 24058225
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cgtgcgtgcatgcatgcata 259 |||||||||||||||||||| Sbjct: 14691 cgtgcgtgcatgcatgcata 14710
>emb|AL772358.6| Mouse DNA sequence from clone RP23-397K2 on chromosome 4, complete sequence Length = 173518 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 tcgtgcgtgcatgcatgcat 258 |||||||||||||||||||| Sbjct: 87658 tcgtgcgtgcatgcatgcat 87677
>dbj|AB075864.1| Homo sapiens mRNA for KIAA1984 protein Length = 4207 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagctccaggttctcctccg 433 |||||||||||||||||||| Sbjct: 1163 cagctccaggttctcctccg 1144 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,544,450 Number of Sequences: 3902068 Number of extensions: 3544450 Number of successful extensions: 72402 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71896 Number of HSP's gapped (non-prelim): 502 length of query: 523 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 500 effective length of database: 17,143,297,704 effective search space: 8571648852000 effective search space used: 8571648852000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
