| Clone Name | rbaal24c14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034C23, full insert sequence Length = 1865 Score = 377 bits (190), Expect = e-101 Identities = 307/346 (88%) Strand = Plus / Minus Query: 194 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 253 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 1483 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1424 Query: 254 tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 313 |||||||||||||||| || ||||||||||| ||||||||||| |||||||||| ||||| Sbjct: 1423 tgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaaccagt 1364 Query: 314 tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 373 | || ||| | ||||||||| ||||||| ||||||| ||| ||||||| ||||||| Sbjct: 1363 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1304 Query: 374 tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 433 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1303 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1244 Query: 434 aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 493 ||||||| || |||||||| ||||| ||||||| ||||||||||| ||||| || |||| Sbjct: 1243 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1184 Query: 494 tcactaggtgatacattgcatcttgtctttcctgtgtagcatcaca 539 ||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 1183 tcactagctggtacattgcatcttgtctttcctgtgtggcatcaca 1138
>dbj|AK064873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J09, full insert sequence Length = 1738 Score = 377 bits (190), Expect = e-101 Identities = 307/346 (88%) Strand = Plus / Minus Query: 194 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 253 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 1467 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1408 Query: 254 tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 313 |||||||||||||||| || ||||||||||| ||||||||||| |||||||||| ||||| Sbjct: 1407 tgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaaccagt 1348 Query: 314 tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 373 | || ||| | ||||||||| ||||||| ||||||| ||| ||||||| ||||||| Sbjct: 1347 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1288 Query: 374 tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 433 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1287 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1228 Query: 434 aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 493 ||||||| || |||||||| ||||| ||||||| ||||||||||| ||||| || |||| Sbjct: 1227 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1168 Query: 494 tcactaggtgatacattgcatcttgtctttcctgtgtagcatcaca 539 ||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 1167 tcactagctggtacattgcatcttgtctttcctgtgtggcatcaca 1122
>dbj|AK062113.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B12, full insert sequence Length = 1852 Score = 363 bits (183), Expect = 4e-97 Identities = 306/346 (88%), Gaps = 2/346 (0%) Strand = Plus / Minus Query: 194 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 253 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 1442 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1383 Query: 254 tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 313 |||||||||||||||| || ||||||||||| |||||||||| |||||||||| ||||| Sbjct: 1382 tgtccggagttgaggcgccagaagtaactcc--ttgtgatagggccttctggtaaccagt 1325 Query: 314 tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 373 | || ||| | ||||||||| ||||||| ||||||| ||| ||||||| ||||||| Sbjct: 1324 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1265 Query: 374 tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 433 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1264 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1205 Query: 434 aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 493 ||||||| || |||||||| ||||| ||||||| ||||||||||| ||||| || |||| Sbjct: 1204 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1145 Query: 494 tcactaggtgatacattgcatcttgtctttcctgtgtagcatcaca 539 ||||||| || |||||||||||||||||||||||||| |||||||| Sbjct: 1144 tcactagctggtacattgcatcttgtctttcctgtgtggcatcaca 1099
>gb|AY104067.1| Zea mays PCO067553 mRNA sequence Length = 839 Score = 315 bits (159), Expect = 8e-83 Identities = 312/363 (85%) Strand = Plus / Minus Query: 181 aaaatctatgcaacctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgta 240 ||||| |||||||||||||||| ||| ||||||||||||||||||||||| || || | | Sbjct: 838 aaaatttatgcaacctgcaaaatttcctgacgcttgatctcaaataccttctgaagagca 779 Query: 241 tcctcgacaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggccct 300 ||||| |||||||| || |||||||||||||| |||||||| ||||| || |||||||| Sbjct: 778 tcctcaacaaccttatctggagttgaggcacctgaagtaacaccaatggtaataggcccc 719 Query: 301 tctggtagccagttttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctg 360 || |||| |||||| | ||||| || || || ||||||| ||||||| |||||| Sbjct: 718 tcgggtaaccagttatttttctcaaccagttcaccatgatttaacttgtagctgatcctg 659 Query: 361 tttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagttct 420 |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 658 tttcctggtccaatcctttgttcactgtcaatccagtatgatggaattccactgagttct 599 Query: 421 ccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataagg 480 || |||||||||| |||||| || ||||| |||||||| ||||||| || ||||||||| Sbjct: 598 ccgatttcttgcagatgagaggtgttacttgaattccatcctccaacaacaagaataagg 539 Query: 481 tcaaccttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaa 540 ||||| || || ||||| || |||||||| ||||||||||||||||| || ||||||||| Sbjct: 538 tcaactttctctttcaccagctgatacatagcatcttgtctttcctgagtggcatcacaa 479 Query: 541 ata 543 ||| Sbjct: 478 ata 476
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 224 bits (113), Expect = 2e-55 Identities = 155/169 (91%) Strand = Plus / Minus Query: 359 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 418 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 112165 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 112106 Query: 419 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 478 |||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||| Sbjct: 112105 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 112046 Query: 479 ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 527 | ||||| || ||||||||||| || ||||||||||||||||||||||| Sbjct: 112045 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 111997 Score = 93.7 bits (47), Expect = 6e-16 Identities = 107/127 (84%) Strand = Plus / Minus Query: 359 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 418 |||| ||||| |||||||| || |||| || | ||||||||| ||||| |||||||||| Sbjct: 105996 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 105937 Query: 419 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 478 ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || | Sbjct: 105936 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 105877 Query: 479 ggtcaac 485 ||||||| Sbjct: 105876 ggtcaac 105870 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 250 accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 309 |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| | Sbjct: 112459 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 112400 Query: 310 cagtt 314 ||||| Sbjct: 112399 cagtt 112395 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 194 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 253 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 112636 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 112577 Score = 40.1 bits (20), Expect = 7.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 250 accttgtccggagttgaggcaccggaagtaactccaattgtgat 293 |||||||| ||||| ||||| || || || |||||||||||||| Sbjct: 106466 accttgtctggagtagaggctccagaggtgactccaattgtgat 106423
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 224 bits (113), Expect = 2e-55 Identities = 155/169 (91%) Strand = Plus / Plus Query: 359 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 418 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 29659212 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 29659271 Query: 419 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 478 |||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||| Sbjct: 29659272 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 29659331 Query: 479 ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 527 | ||||| || ||||||||||| || ||||||||||||||||||||||| Sbjct: 29659332 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 29659380 Score = 93.7 bits (47), Expect = 6e-16 Identities = 107/127 (84%) Strand = Plus / Plus Query: 359 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 418 |||| ||||| |||||||| || |||| || | ||||||||| ||||| |||||||||| Sbjct: 29665381 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 29665440 Query: 419 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 478 ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || | Sbjct: 29665441 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 29665500 Query: 479 ggtcaac 485 ||||||| Sbjct: 29665501 ggtcaac 29665507 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 250 accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 309 |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| | Sbjct: 29658918 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 29658977 Query: 310 cagtt 314 ||||| Sbjct: 29658978 cagtt 29658982 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 194 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 253 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 29658741 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 29658800 Score = 40.1 bits (20), Expect = 7.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 250 accttgtccggagttgaggcaccggaagtaactccaattgtgat 293 |||||||| ||||| ||||| || || || |||||||||||||| Sbjct: 29664911 accttgtctggagtagaggctccagaggtgactccaattgtgat 29664954 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tatgcaacctgcaaaacttc 206 |||||||||||||||||||| Sbjct: 2679604 tatgcaacctgcaaaacttc 2679623
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 224 bits (113), Expect = 2e-55 Identities = 155/169 (91%) Strand = Plus / Plus Query: 359 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 418 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 29750634 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 29750693 Query: 419 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 478 |||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||| Sbjct: 29750694 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 29750753 Query: 479 ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 527 | ||||| || ||||||||||| || ||||||||||||||||||||||| Sbjct: 29750754 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 29750802 Score = 93.7 bits (47), Expect = 6e-16 Identities = 107/127 (84%) Strand = Plus / Plus Query: 359 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 418 |||| ||||| |||||||| || |||| || | ||||||||| ||||| |||||||||| Sbjct: 29756803 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 29756862 Query: 419 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 478 ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || | Sbjct: 29756863 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 29756922 Query: 479 ggtcaac 485 ||||||| Sbjct: 29756923 ggtcaac 29756929 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 250 accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 309 |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| | Sbjct: 29750340 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 29750399 Query: 310 cagtt 314 ||||| Sbjct: 29750400 cagtt 29750404 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 194 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 253 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 29750163 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 29750222 Score = 40.1 bits (20), Expect = 7.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 250 accttgtccggagttgaggcaccggaagtaactccaattgtgat 293 |||||||| ||||| ||||| || || || |||||||||||||| Sbjct: 29756333 accttgtctggagtagaggctccagaggtgactccaattgtgat 29756376 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tatgcaacctgcaaaacttc 206 |||||||||||||||||||| Sbjct: 2679714 tatgcaacctgcaaaacttc 2679733
>gb|DQ364231.1| Ginkgo biloba 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (HDR) mRNA, complete cds Length = 1827 Score = 89.7 bits (45), Expect = 9e-15 Identities = 231/293 (78%) Strand = Plus / Minus Query: 247 acaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggt 306 ||||| ||||| || ||||| ||||| || || || |||||||| |||||||||||||| Sbjct: 1392 acaactttgtctggggttgaagcaccagatgtgaccccaattgtaataggcccttctggc 1333 Query: 307 agccagttttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcct 366 | |||||| || ||| | ||||| || ||||| | |||||| |||||| | || || Sbjct: 1332 aaccagttctctttctccaccagctccccatgattcaacttgtatgcaatcatattccca 1273 Query: 367 ggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatt 426 |||||||| | | ||| |||||||||||| || || || ||| | | ||| | || Sbjct: 1272 ggtccaatacgctcctcagagtcaatccagtatgaagggattccattcaattcagctatc 1213 Query: 427 tcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataaggtcaacc 486 |||||||| || || ||||| || || ||||| ||||||||||||| ||| || || | | Sbjct: 1212 tcttgcaagtgtgatgtattgctagagttccatcctccaatgaccaaaatgagatcgagc 1153 Query: 487 ttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatcaca 539 || ||||| ||||| |||| ||||||||||||||||||||| ||||||||||| Sbjct: 1152 ttatcctttactagctgatgcattgcatcttgtctttcctgagtagcatcaca 1100
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 506 acattgcatcttgtctttcctgtgtagcatcacaaata 543 ||||||||||||||||||| | ||||||||| |||||| Sbjct: 288757 acattgcatcttgtctttcttctgtagcatcgcaaata 288720
>gb|DQ366744.1| Uncultured Prochlorococcus marinus clone HOT0M-8G12 genomic sequence Length = 20915 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 506 acattgcatcttgtctttcctgtgtagcatcacaaat 542 ||||||||||||||||||| | ||| ||||||||||| Sbjct: 3928 acattgcatcttgtctttcttctgttgcatcacaaat 3892
>gb|AY433790.1| Pyrus communis LYTB-like protein mRNA, complete sequence Length = 246 Score = 46.1 bits (23), Expect = 0.12 Identities = 98/123 (79%) Strand = Plus / Minus Query: 417 ttctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaat 476 |||| |||||||||| | ||||| || ||||| || |||||||| |||||||| | | Sbjct: 239 ttctgcaatttcttgtaggtgagaggtgttactcgagttccacccaccaatgactaacaa 180 Query: 477 aaggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatc 536 ||| |||| |||||||| || || | |||||||||||||||| ||||| || ||||| Sbjct: 179 aagatcaagcttttcctcaacaagcttgtacattgcatcttgtcgctcctgagttgcatc 120 Query: 537 aca 539 ||| Sbjct: 119 aca 117
>gb|AY347830.1| Malus x domestica clone 30-6 LYTB-like protein mRNA, partial cds Length = 393 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Minus Query: 247 acaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggt 306 |||||||| || ||||| || || || || || |||||||| |||| ||| |||||||| Sbjct: 155 acaaccttatctggagtagatgccccagatgtcactccaatagtgacaggaccttctggc 96 Query: 307 agccagttttc 317 ||||||||||| Sbjct: 95 agccagttttc 85
>gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. pombe) (CDC5L) gene, complete cds Length = 63393 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 449 tggaattccaccctccaatgac 470 |||||||||||||||||||||| Sbjct: 17026 tggaattccaccctccaatgac 17047
>emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on chromosome 6 Contains the gene for a novel protein (possible ortholog of mouse TCTE1), the gene for novel protein (KIAA1270), a novel gene, the 5' end of a novel gene (possible ortholog of rodent CDC5-like protein), the 3' part of a novel gene and three CpG islands, complete sequence Length = 145947 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 449 tggaattccaccctccaatgac 470 |||||||||||||||||||||| Sbjct: 126006 tggaattccaccctccaatgac 126027
>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5 Length = 349742 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Minus Query: 506 acattgcatcttgtctttcctgtgtagcatcaca 539 |||| |||||||||||||| | |||||||||||| Sbjct: 255076 acatcgcatcttgtctttcttctgtagcatcaca 255043
>gb|AF270978.1|AF270978 Adonis palaestina LYTB-like protein precursor (lytB) mRNA, complete cds Length = 1599 Score = 44.1 bits (22), Expect = 0.47 Identities = 103/130 (79%) Strand = Plus / Minus Query: 283 ccaattgtgataggcccttctggtagccagttttccgcctcaataagctcgccgtgattt 342 |||||||| | ||| || ||||| ||||||||||| | ||||| ||||| || ||||| Sbjct: 1324 ccaattgtaacaggaccctctgggagccagttttcggtctcaactagctcaccatgattc 1265 Query: 343 agcttgtaggcaatcctgtttcctggtccaatcctttgttcactgtcaatccagtaggac 402 | |||| | |||| ||||||||||||| || || ||||||||||||||||| || Sbjct: 1264 aatttgtggctaatcttgtttcctggtcctattctcgtctcactgtcaatccagtaagaa 1205 Query: 403 ggaataccac 412 ||||| |||| Sbjct: 1204 ggaatgccac 1195
>gb|AC027702.18| Homo sapiens chromosome 8, clone RP11-108L9, complete sequence Length = 125719 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 ttacaacatatatatgtatccc 46 |||||||||||||||||||||| Sbjct: 76544 ttacaacatatatatgtatccc 76523
>dbj|AB022217.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGL6 Length = 79459 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 agtgattacaacattacaacat 33 |||||||||||||||||||||| Sbjct: 53772 agtgattacaacattacaacat 53751
>emb|CR847806.15| Zebrafish DNA sequence from clone CH211-267J10 in linkage group 8, complete sequence Length = 151455 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 tacaacattacaacatatatatgta 42 |||||||| |||||||||||||||| Sbjct: 28951 tacaacatcacaacatatatatgta 28927
>gb|AC158342.4| Mus musculus chromosome 1, clone RP23-12H12, complete sequence Length = 224295 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 atatatatgtatcccagcaca 52 ||||||||||||||||||||| Sbjct: 172711 atatatatgtatcccagcaca 172691
>gb|AC091969.3| Homo sapiens chromosome 5 clone RP11-501F22, complete sequence Length = 177647 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tgtatcccagcacagacatcc 59 ||||||||||||||||||||| Sbjct: 50663 tgtatcccagcacagacatcc 50643
>gb|AC091829.2| Homo sapiens chromosome 5 clone CTD-2021O22, complete sequence Length = 92702 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 tgtatcccagcacagacatcc 59 ||||||||||||||||||||| Sbjct: 5857 tgtatcccagcacagacatcc 5877
>gb|AC134788.10| Mus musculus chromosome 1, clone RP24-482A14, complete sequence Length = 157535 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 atatatatgtatcccagcaca 52 ||||||||||||||||||||| Sbjct: 51321 atatatatgtatcccagcaca 51341
>ref|XM_632282.1| Dictyostelium discoideum hypothetical protein (DDB0187318), partial mRNA Length = 4314 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 cattgcatcttgtctttcct 526 |||||||||||||||||||| Sbjct: 876 cattgcatcttgtctttcct 895
>gb|AC007865.8| Trypanosoma brucei chromosome 2 clone RPCI93-30M24, complete sequence Length = 148533 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 caacattacaacatatatat 39 |||||||||||||||||||| Sbjct: 67353 caacattacaacatatatat 67334 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 caacattacaacatatatat 39 |||||||||||||||||||| Sbjct: 44230 caacattacaacatatatat 44211
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 caacattacaacatatatat 39 |||||||||||||||||||| Sbjct: 867012 caacattacaacatatatat 867031 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 caacattacaacatatatat 39 |||||||||||||||||||| Sbjct: 843889 caacattacaacatatatat 843908
>gb|AC104863.12| Mus musculus chromosome 6, clone RP23-109C11, complete sequence Length = 198321 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 attacaacatatatatgtat 43 |||||||||||||||||||| Sbjct: 81919 attacaacatatatatgtat 81938
>gb|DQ269451.2| Stevia rebaudiana IPP/DMAPP synthase (ispH) mRNA, complete cds Length = 1637 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 504 atacattgcatcttgtctttcctgtgtagcatcaca 539 |||||| |||||||||| ||| || ||||||||||| Sbjct: 1125 atacatagcatcttgtcgttcttgagtagcatcaca 1090
>emb|AL663002.3|OSJN00199 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026I12, complete sequence Length = 128574 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 caacattacaacatatatat 39 |||||||||||||||||||| Sbjct: 101460 caacattacaacatatatat 101441
>emb|BX537103.6| Zebrafish DNA sequence from clone CH211-194E1 in linkage group 8, complete sequence Length = 187569 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 attacaacattacaacatat 35 |||||||||||||||||||| Sbjct: 138189 attacaacattacaacatat 138170
>gb|AC018680.4|AC018680 Homo sapiens BAC clone RP11-384E2 from 4, complete sequence Length = 181850 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 aaatgagaagtattactgga 452 |||||||||||||||||||| Sbjct: 97056 aaatgagaagtattactgga 97075
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 caacattacaacatatatat 39 |||||||||||||||||||| Sbjct: 9769254 caacattacaacatatatat 9769235
>emb|BX950457.1| Gallus gallus finished cDNA, clone ChEST992n21 Length = 1065 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 tgaaaatctatgcaacctgc 198 |||||||||||||||||||| Sbjct: 1005 tgaaaatctatgcaacctgc 1024
>emb|BX890594.1|OSJN00301 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062N22, complete sequence Length = 181586 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 caacattacaacatatatat 39 |||||||||||||||||||| Sbjct: 10770 caacattacaacatatatat 10751
>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050N02, complete sequence Length = 133373 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tatgcaacctgcaaaacttc 206 |||||||||||||||||||| Sbjct: 24523 tatgcaacctgcaaaacttc 24542 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,802,660 Number of Sequences: 3902068 Number of extensions: 4802660 Number of successful extensions: 106889 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 106618 Number of HSP's gapped (non-prelim): 268 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)