ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYB_TOXGO (O20672) Cytochrome b 30 2.0
2CYB_AUSSU (Q9MLL3) Cytochrome b 28 7.5
3YFM7_YEAST (P43625) Hypothetical 17.5 kDa protein in HXK1 3'region 28 7.5
4CYB6_GLOVI (Q7NJB3) Cytochrome b6 27 9.8

>CYB_TOXGO (O20672) Cytochrome b|
          Length = 368

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 201 ALLAGYLFLCILVYLNQGLYSIIY 130
           A  A ++FLCIL+++ +GLY+  Y
Sbjct: 83  ATTASFVFLCILIHMTRGLYNWSY 106



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>CYB_AUSSU (Q9MLL3) Cytochrome b|
          Length = 367

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 201 ALLAGYLFLCILVYLNQGLYSIIYISIKV 115
           A+ A   F+CI +++ +GLY  +Y++ KV
Sbjct: 76  AIGASMFFICIYIHIARGLYYGLYLNKKV 104



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>YFM7_YEAST (P43625) Hypothetical 17.5 kDa protein in HXK1 3'region|
          Length = 151

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 199 FVGWIFISMHLSIFKPGSLFHYLHFHKSRAF 107
           F  W + S +LSI++   LFH+L    S  F
Sbjct: 65  FFAWQYTSYYLSIYRQSFLFHFLQKDFSNDF 95



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>CYB6_GLOVI (Q7NJB3) Cytochrome b6|
          Length = 215

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
 Frame = -3

Query: 208 ELSFVGWIFISMHLSIFKPGSLFHYLH---------FHKSRAFT*CKVVLSACLAVNLSL 56
           E+SF GW+  S+H        L   LH         F + R  T    VL ACL V+  +
Sbjct: 75  EVSF-GWLIRSIHRWSASMMVLAMILHTFRVYLTGGFKRPRELTWVTGVLLACLTVSFGV 133

Query: 55  AGYKFSENQL 26
            GY    +Q+
Sbjct: 134 TGYSLPWDQV 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,610,945
Number of Sequences: 219361
Number of extensions: 569029
Number of successful extensions: 1992
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1992
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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