Clone Name	rbaal24b07
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor ...	504	e-139
2	emb|AJ222783.1|HVJ222783 Hordeum vulgare mRNA for cytochrome b6/...	355	6e-95
3	gb|BT016255.1| Zea mays clone Contig88 mRNA sequence	281	7e-73
4	gb|AY104934.1| Zea mays PCO071754 mRNA sequence	266	4e-68
5	dbj|AK071634.1| Oryza sativa (japonica cultivar-group) cDNA clon...	238	9e-60
6	gb|AF093631.1|AF093631 Oryza sativa Rieske Fe-S precursor protei...	238	9e-60
7	gb|AY581830.1| Cynodon dactylon putative Rieske Fe-S precursor p...	210	2e-51
8	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	129	6e-27
9	dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic D...	129	6e-27
10	emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,...	88	2e-14
11	dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...	88	2e-14
12	ref|NM_193963.1| Oryza sativa (japonica cultivar-group), predic...	82	1e-12
13	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	82	1e-12
14	dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic D...	82	1e-12
15	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	80	5e-12
16	dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic D...	80	5e-12
17	dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic D...	80	5e-12
18	gb|DQ384526.1| Panax ginseng clone PG6L-3 photosynthetic electro...	78	2e-11
19	gb|AF037456.1|AF037456 Fritillaria agrestis cytochrome B6-F comp...	78	2e-11
20	gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome...	70	5e-09
21	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	70	5e-09
22	gb|DQ122916.1| Chlamydomonas incerta chloroplast cytochrome B6/F...	62	1e-06
23	dbj|AU066527.1| Chlamydomonas sp. HS-5 mRNA for hypothetical pro...	62	1e-06
24	dbj|D32003.1| Chlamydomonas reinhardtii mRNA for chloroplast Rie...	62	1e-06
25	emb|X63605.1|PSPETC P.sativum petC mRNA for chloroplast Rieske F...	56	7e-05
26	gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21...	56	7e-05
27	gb|AY300039.1| Solanum tuberosum putative Rieske Fe-S protein pr...	54	3e-04
28	dbj|AB025003.1| Cicer arietinum mRNA for plastoquinol-plastocyan...	54	3e-04
29	ref|NM_116566.3| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECT...	50	0.005
30	ref|NM_178964.1| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECT...	50	0.005
31	gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV...	50	0.005
32	emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, c...	50	0.005
33	emb|AJ292972.1|ATH292972 Arabidopsis thaliana petC gene for Ries...	50	0.005
34	emb|AJ243702.1|ATH243702 Arabidopsis thaliana mRNA for rieske ir...	50	0.005
35	gb|AY093726.1| Arabidopsis thaliana AT4g03280/F4C21_21 mRNA, com...	50	0.005
36	gb|AF410296.1|AF410296 Arabidopsis thaliana AT4g03280/F4C21_21 m...	50	0.005
37	gb|AF370566.1|AF370566 Arabidopsis thaliana putative component o...	50	0.005
38	emb|BX826457.1|CNS0A4G1 Arabidopsis thaliana Full-length cDNA Co...	50	0.005
39	emb|BX827560.1|CNS0A2RQ Arabidopsis thaliana Full-length cDNA Co...	50	0.005
40	gb|AY267656.1| Bigelowiella natans Fe-S subunit of cytochrome c6...	48	0.018
41	emb|X06244.1|SORFES Spinach mRNA for Rieske FeS-precursor protein	46	0.071
42	gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence	44	0.28
43	emb|X66009.1|NTRFES1 N.tabacum mRNA for chloroplast Rieske FeS p...	44	0.28
44	emb|X64353.1|NTRFSCBFC N.tabacum mRNA for Rieske Fe/S protein of...	44	0.28
45	dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...	44	0.28
46	gb|AY487229.1| Mycobacterium fortuitum PgaE gene, partial cds; p...	44	0.28
47	dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic...	44	0.28
48	emb|X76299.1|CRPETC C.reinhardtii petC gene	42	1.1
49	emb|BX826302.1|CNS0A381 Arabidopsis thaliana Full-length cDNA Co...	42	1.1
50	gb|AY826845.1| Pavlova lutheri clone PLCB61 chloroplast cytochro...	42	1.1
51	gb|AF110783.1|AF110783 Volvox carteri f. nagariensis clone G9 ri...	42	1.1
52	gb|AC120788.7| Mus musculus chromosome 14, clone RP23-279B13, co...	40	4.4
53	ref|XM_659574.1| Aspergillus nidulans FGSC A4 hypothetical prote...	40	4.4
54	ref|XM_754954.1| Ustilago maydis 521 hypothetical protein (UM039...	40	4.4
55	gb|AC125332.3| Mus musculus BAC clone RP23-113I20 from 3, comple...	40	4.4
56	gb|AC121928.2| Mus musculus BAC clone RP24-204F1 from 3, complet...	40	4.4
57	emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chr...	40	4.4
58	emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on ch...	40	4.4
59	gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 ma...	40	4.4
60	emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chro...	40	4.4
61	emb|BX826362.1|CNS0A4FZ Arabidopsis thaliana Full-length cDNA Co...	40	4.4
62	gb|AC012451.8| Homo sapiens BAC clone RP11-414K19 from 2, comple...	40	4.4
63	dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome	40	4.4
64	gb|U04283.1|SAPHSA Streptomyces antibioticus IMRU3720 phenoxazin...	40	4.4

---

>gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor protein mRNA,
           complete cds
          Length = 866

 Score =  504 bits (254), Expect = e-139
 Identities = 314/331 (94%), Gaps = 4/331 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatatanccggatacaagtaaacaggtgcatttatagcagggagtactcttat--agc 58
           |||||||| | ||||||||| |||||||||||||||||||||| |||| ||||||  |||
Sbjct: 848 tacatataactggatacaag-aaacaggtgcatttatagcagg-agtagtcttatgtagc 791

                                                                       
Query: 59  agcgttcttaggactggcaggaggcttaacatatcacacgagtgagctttgctgccggag 118
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 790 agcgttcttaggactggcaggaggcttaacatatcacaggagtgagcattgctgccggag 731

                                                                       
Query: 119 cttgtgtcgcttatttccaccacgggttctcgccggtcctgaagtcggtctccacccatg 178
           |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 730 cttgcgtcgcttatttccaccacgggttgtcgccggtcctgaagtcggtctccacccacg 671

                                                                       
Query: 179 gcacgaagacgaccttgccgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtg 238
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 670 gcacgaagacgaccttgccgtcgtcgacgtcggcgtgaaccagggccagcgacagaggtg 611

                                                                       
Query: 239 caggtccacggacaaccttgccctggttgttgtactgggatccatggcaagggcagagga 298
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 610 caggcccacggacaaccttgccctggttgttgtactgggatccatggcaggggcagagga 551

                                          
Query: 299 acttgttctnggcggcgttccaaggcacgac 329
           ||||||||| |||||||||||| ||||||||
Sbjct: 550 acttgttctcggcggcgttccacggcacgac 520

---

>emb|AJ222783.1|HVJ222783 Hordeum vulgare mRNA for cytochrome b6/f-complex iron-sulfur
           like-protein, clone RG115
          Length = 275

 Score =  355 bits (179), Expect = 6e-95
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 148 tcgccggtcctgaagtcggtctccacccatggcacgaagacgaccttgccgtcgtcgacg 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcgccggtcctgaagtcggtctccacccatggcacgaagacgaccttgccgtcgtcgacg 216

                                                                       
Query: 208 tcggcgtgaacgagggccagcgacagaggtgcaggtccacggacaaccttgccctggttg 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tcggcgtgaacgagggccagcgacagaggtgcaggtccacggacaaccttgccctggttg 156

                                                                       
Query: 268 ttgtactgggatccatggcaagggcagaggaacttgttctnggcggcgttccaaggcacg 327
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 155 ttgtactgggatccatggcaagggcagaggaacttgttctcggcggcgttccaaggcacg 96

             
Query: 328 ac 329
           ||
Sbjct: 95  ac 94

---

>gb|BT016255.1| Zea mays clone Contig88 mRNA sequence
          Length = 998

 Score =  281 bits (142), Expect = 7e-73
 Identities = 183/197 (92%)
 Strand = Plus / Minus

                                                                       
Query: 133 ttccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacc 192
           ||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 746 ttccaccacgggtcctcgccggtcctgaagtcggtctccacccacgggacgaagaggacc 687

                                                                       
Query: 193 ttgccgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggaca 252
           |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| 
Sbjct: 686 ttgccgtcgtcgacgtcggcgtgaaccagggccagcgacagaggcgccggtccacggacc 627

                                                                       
Query: 253 accttgccctggttgttgtactgggatccatggcaagggcagaggaacttgttctnggcg 312
           ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||
Sbjct: 626 accttgccctggttgttgtactgggatccgtggcatgggcagatgaacttgttctcggcg 567

                            
Query: 313 gcgttccaaggcacgac 329
            ||||||| ||||||||
Sbjct: 566 ccgttccacggcacgac 550

---

>gb|AY104934.1| Zea mays PCO071754 mRNA sequence
          Length = 1058

 Score =  266 bits (134), Expect = 4e-68
 Identities = 181/197 (91%)
 Strand = Plus / Minus

                                                                       
Query: 133 ttccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacc 192
           |||||||| |||| |||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 805 ttccaccatgggtcctcgccggtcctgaagtcggtctccacccacgggacgaagaggacc 746

                                                                       
Query: 193 ttgccgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggaca 252
           |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| 
Sbjct: 745 ttgccgtcgtcgacgtcggcgtgaaccagggccagcgacagaggcgccggtccacggacc 686

                                                                       
Query: 253 accttgccctggttgttgtactgggatccatggcaagggcagaggaacttgttctnggcg 312
           ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||  |||
Sbjct: 685 accttgccctggttgttgtactgggatccgtggcaggggcagatgaacttgttctcagcg 626

                            
Query: 313 gcgttccaaggcacgac 329
            ||||||| ||||||||
Sbjct: 625 ccgttccacggcacgac 609

---

>dbj|AK071634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100K03, full
           insert sequence
          Length = 1082

 Score =  238 bits (120), Expect = 9e-60
 Identities = 176/195 (90%)
 Strand = Plus / Minus

                                                                       
Query: 135 ccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacctt 194
           |||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 725 ccaccacgggttgtcgccggtcctgaagtcggtctccacccacggcacgaagagaacctt 666

                                                                       
Query: 195 gccgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggacaac 254
           ||||||||||||||||||||| || |  ||||||||||| || |||||||||||||| ||
Sbjct: 665 gccgtcgtcgacgtcggcgtgcaccaatgccagcgacaggggagcaggtccacggacgac 606

                                                                       
Query: 255 cttgccctggttgttgtactgggatccatggcaagggcagaggaacttgttctnggcggc 314
           | ||||||||||||||||||| || || ||||| ||||||| ||||||||||| ||||||
Sbjct: 605 cctgccctggttgttgtactgcgagccgtggcaggggcagatgaacttgttctcggcggc 546

                          
Query: 315 gttccaaggcacgac 329
           |||||| ||||||||
Sbjct: 545 gttccacggcacgac 531

---

>gb|AF093631.1|AF093631 Oryza sativa Rieske Fe-S precursor protein (RISP) mRNA, complete
           cds
          Length = 919

 Score =  238 bits (120), Expect = 9e-60
 Identities = 176/195 (90%)
 Strand = Plus / Minus

                                                                       
Query: 135 ccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacctt 194
           |||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 713 ccaccacgggttgtcgccggtcctgaagtcggtctccacccacggcacgaagagaacctt 654

                                                                       
Query: 195 gccgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggacaac 254
           ||||||||||||||||||||| || |  ||||||||||| || |||||||||||||| ||
Sbjct: 653 gccgtcgtcgacgtcggcgtgcaccaatgccagcgacaggggagcaggtccacggacgac 594

                                                                       
Query: 255 cttgccctggttgttgtactgggatccatggcaagggcagaggaacttgttctnggcggc 314
           | ||||||||||||||||||| || || ||||| ||||||| ||||||||||| ||||||
Sbjct: 593 cctgccctggttgttgtactgcgagccgtggcaggggcagatgaacttgttctcggcggc 534

                          
Query: 315 gttccaaggcacgac 329
           |||||| ||||||||
Sbjct: 533 gttccacggcacgac 519

---

>gb|AY581830.1| Cynodon dactylon putative Rieske Fe-S precursor protein mRNA,
           partial cds
          Length = 511

 Score =  210 bits (106), Expect = 2e-51
 Identities = 174/197 (88%)
 Strand = Plus / Minus

                                                                       
Query: 133 ttccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacc 192
           |||||||| |||| |||||||||||||||||||||||||||||| || ||||| | | ||
Sbjct: 327 ttccaccaggggtcctcgccggtcctgaagtcggtctccacccacgggacgaaaagggcc 268

                                                                       
Query: 193 ttgccgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggaca 252
           |||||||||||||||||||||||||| | |||||||||||| || || ||||||||||| 
Sbjct: 267 ttgccgtcgtcgacgtcggcgtgaaccaaggccagcgacagtggcgccggtccacggacg 208

                                                                       
Query: 253 accttgccctggttgttgtactgggatccatggcaagggcagaggaacttgttctnggcg 312
           ||||||||||||||||||||||||||||| ||||| ||| | | ||||||||||| || |
Sbjct: 207 accttgccctggttgttgtactgggatccgtggcatgggtacatgaacttgttctcgggg 148

                            
Query: 313 gcgttccaaggcacgac 329
           |  ||||| ||||||||
Sbjct: 147 ggattccacggcacgac 131

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  129 bits (65), Expect = 6e-27
 Identities = 77/81 (95%)
 Strand = Plus / Minus

                                                                            
Query: 135      ccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacctt 194
                |||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 22132954 ccaccacgggttgtcgccggtcctgaagtcggtctccacccacggcacgaagagaacctt 22132895

                                     
Query: 195      gccgtcgtcgacgtcggcgtg 215
                |||||||||||||||||||||
Sbjct: 22132894 gccgtcgtcgacgtcggcgtg 22132874



 Score =  113 bits (57), Expect = 4e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                            
Query: 238      gcaggtccacggacaaccttgccctggttgttgtactgggatccatggcaagggcagagg 297
                |||||||||||||| ||| ||||||||||||||||||| || || ||||| ||||||| |
Sbjct: 22132649 gcaggtccacggacgaccctgccctggttgttgtactgcgagccgtggcaggggcagatg 22132590

                                                
Query: 298      aacttgttctnggcggcgttccaaggcacgac 329
                |||||||||| |||||||||||| ||||||||
Sbjct: 22132589 aacttgttctcggcggcgttccacggcacgac 22132558

---

>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0058I18
          Length = 151453

 Score =  129 bits (65), Expect = 6e-27
 Identities = 77/81 (95%)
 Strand = Plus / Minus

                                                                         
Query: 135   ccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacctt 194
             |||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 86610 ccaccacgggttgtcgccggtcctgaagtcggtctccacccacggcacgaagagaacctt 86551

                                  
Query: 195   gccgtcgtcgacgtcggcgtg 215
             |||||||||||||||||||||
Sbjct: 86550 gccgtcgtcgacgtcggcgtg 86530



 Score =  113 bits (57), Expect = 4e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                         
Query: 238   gcaggtccacggacaaccttgccctggttgttgtactgggatccatggcaagggcagagg 297
             |||||||||||||| ||| ||||||||||||||||||| || || ||||| ||||||| |
Sbjct: 86305 gcaggtccacggacgaccctgccctggttgttgtactgcgagccgtggcaggggcagatg 86246

                                             
Query: 298   aacttgttctnggcggcgttccaaggcacgac 329
             |||||||||| |||||||||||| ||||||||
Sbjct: 86245 aacttgttctcggcggcgttccacggcacgac 86214

---

>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
             complete sequence
          Length = 188317

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 88/103 (85%), Gaps = 6/103 (5%)
 Strand = Plus / Plus

                                                                         
Query: 135   ccaccacgggttctcgccggtcctgaagtcggtctccac------ccatggcacgaagac 188
             |||||||||||| ||||| ||||||||||||||||||||      ||| |||||||||| 
Sbjct: 53046 ccaccacgggttgtcgccagtcctgaagtcggtctccactcacacccacggcacgaagag 53105

                                                        
Query: 189   gaccttgccgtcgtcgacgtcggcgtgaacgagggccagcgac 231
              |||||| |||||||||||||||||||||| |  |||||||||
Sbjct: 53106 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 53148

---

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 88/103 (85%), Gaps = 6/103 (5%)
 Strand = Plus / Plus

                                                                            
Query: 135      ccaccacgggttctcgccggtcctgaagtcggtctccac------ccatggcacgaagac 188
                |||||||||||| ||||| ||||||||||||||||||||      ||| |||||||||| 
Sbjct: 18961122 ccaccacgggttgtcgccagtcctgaagtcggtctccactcacacccacggcacgaagag 18961181

                                                           
Query: 189      gaccttgccgtcgtcgacgtcggcgtgaacgagggccagcgac 231
                 |||||| |||||||||||||||||||||| |  |||||||||
Sbjct: 18961182 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 18961224

---

>ref|NM_193963.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 705

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                       
Query: 167 tctccacccatggcacgaagacgaccttgccgtcgtcgacgtcggcgtgaacgagggcca 226
           |||||||||| ||||||||||  ||||||||||||||||||||||||||||| |  ||||
Sbjct: 160 tctccacccacggcacgaagagaaccttgccgtcgtcgacgtcggcgtgaaccaatgcca 101

                
Query: 227 gcgac 231
           |||||
Sbjct: 100 gcgac 96

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 167      tctccacccatggcacgaagacgaccttgccgtcgtcgacgtcggcgtgaacgagggcca 226
                |||||||||| ||||||||||  ||||||||||||||||||||||||||||| |  ||||
Sbjct: 14242662 tctccacccacggcacgaagagaaccttgccgtcgtcgacgtcggcgtgaaccaatgcca 14242603

                     
Query: 227      gcgac 231
                |||||
Sbjct: 14242602 gcgac 14242598

---

>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458A05
          Length = 120593

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 167   tctccacccatggcacgaagacgaccttgccgtcgtcgacgtcggcgtgaacgagggcca 226
             |||||||||| ||||||||||  ||||||||||||||||||||||||||||| |  ||||
Sbjct: 38352 tctccacccacggcacgaagagaaccttgccgtcgtcgacgtcggcgtgaaccaatgcca 38293

                  
Query: 227   gcgac 231
             |||||
Sbjct: 38292 gcgac 38288

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 87/103 (84%), Gaps = 6/103 (5%)
 Strand = Plus / Minus

                                                                           
Query: 135     ccaccacgggttctcgccggtcctgaagtcggtctccac------ccatggcacgaagac 188
               |||||||||||| ||||| ||||||||||| ||||||||      ||| |||||||||| 
Sbjct: 8732264 ccaccacgggttgtcgccagtcctgaagtcagtctccactcacacccacggcacgaagag 8732205

                                                          
Query: 189     gaccttgccgtcgtcgacgtcggcgtgaacgagggccagcgac 231
                |||||| |||||||||||||||||||||| |  |||||||||
Sbjct: 8732204 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 8732162

---

>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0463G12
          Length = 145403

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 87/103 (84%), Gaps = 6/103 (5%)
 Strand = Plus / Minus

                                                                          
Query: 135    ccaccacgggttctcgccggtcctgaagtcggtctccac------ccatggcacgaagac 188
              |||||||||||| ||||| ||||||||||| ||||||||      ||| |||||||||| 
Sbjct: 139311 ccaccacgggttgtcgccagtcctgaagtcagtctccactcacacccacggcacgaagag 139252

                                                         
Query: 189    gaccttgccgtcgtcgacgtcggcgtgaacgagggccagcgac 231
               |||||| |||||||||||||||||||||| |  |||||||||
Sbjct: 139251 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 139209

---

>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0052K15
          Length = 156250

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 87/103 (84%), Gaps = 6/103 (5%)
 Strand = Plus / Minus

                                                                         
Query: 135   ccaccacgggttctcgccggtcctgaagtcggtctccac------ccatggcacgaagac 188
             |||||||||||| ||||| ||||||||||| ||||||||      ||| |||||||||| 
Sbjct: 31343 ccaccacgggttgtcgccagtcctgaagtcagtctccactcacacccacggcacgaagag 31284

                                                        
Query: 189   gaccttgccgtcgtcgacgtcggcgtgaacgagggccagcgac 231
              |||||| |||||||||||||||||||||| |  |||||||||
Sbjct: 31283 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 31241

---

>gb|DQ384526.1| Panax ginseng clone PG6L-3 photosynthetic electron transfer-like
           protein mRNA, complete cds
          Length = 770

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                       
Query: 229 gacagaggtgcaggtccacggacaaccttgccctggttgttgtactgggatccatggcaa 288
           |||||||| ||||| || |  ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 528 gacagaggagcagggcctctaacaaccttgccttggttgttgtactgagatccatggcat 469

                              
Query: 289 gggcagaggaacttgttct 307
           ||||| | |||||||||||
Sbjct: 468 gggcacatgaacttgttct 450

---

>gb|AF037456.1|AF037456 Fritillaria agrestis cytochrome B6-F complex iron-sulfur subunit
           precursor (petC) mRNA, complete cds
          Length = 881

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 223 gccagcgacagaggtgcaggtccacggacaaccttgccctggttgttgtactgggatcca 282
           ||||||||||  ||||||||||| | ||||||||| || || |||||||| || ||||| 
Sbjct: 605 gccagcgacaacggtgcaggtcccctgacaaccttcccttgattgttgtattgcgatccg 546

                                  
Query: 283 tggcaagggcagaggaacttgtt 305
           ||||| |||||||||||||||||
Sbjct: 545 tggcaggggcagaggaacttgtt 523

---

>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05,
             complete sequence
          Length = 143400

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                         
Query: 169   tccacccatggcacgaagacgaccttgccgtcgtcgacgtcggcgtgaacgagggccagc 228
             |||| ||| ||||||||||  ||||||||||||||||||||||||||||| |  ||||||
Sbjct: 64199 tccatccacggcacgaagataaccttgccgtcgtcgacgtcggcgtgaaccaatgccagc 64258

                
Query: 229   gac 231
             |||
Sbjct: 64259 gac 64261

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                            
Query: 169      tccacccatggcacgaagacgaccttgccgtcgtcgacgtcggcgtgaacgagggccagc 228
                |||| ||| ||||||||||  ||||||||||||||||||||||||||||| |  ||||||
Sbjct: 16113029 tccatccacggcacgaagataaccttgccgtcgtcgacgtcggcgtgaaccaatgccagc 16113088

                   
Query: 229      gac 231
                |||
Sbjct: 16113089 gac 16113091

---

>gb|DQ122916.1| Chlamydomonas incerta chloroplast cytochrome B6/F complex rieske
           iron-sulfur protein (PetC) mRNA, partial cds; nuclear
           gene for chloroplast product
          Length = 1178

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 220 agggccagcgacagaggtgcaggtccacggacaaccttgccctggttgttgtactgggat 279
           |||||||||||||| || || || |||||||| ||||||||||    ||||||||| || 
Sbjct: 443 agggccagcgacaggggagcggggccacggaccaccttgccctcagcgttgtactgagag 384

                                                             
Query: 280 ccatggcaagggcagaggaacttgttctnggcggcgttccaaggcacgac 329
           || |||||||||||   ||||||||||| ||| ||   ||||||||||||
Sbjct: 383 ccgtggcaagggcacttgaacttgttctcggccgccacccaaggcacgac 334

---

>dbj|AU066527.1| Chlamydomonas sp. HS-5 mRNA for hypothetical protein, NaCl
           inducible, complete cds, clone:NaEX96-104
          Length = 578

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 253 accttgccctggttgttgtactgggatccatggcaagggcagaggaacttgttct 307
           ||||||||||||||||||||||| ||||| ||||| |||||   |||||||||||
Sbjct: 474 accttgccctggttgttgtactgcgatccgtggcaggggcacttgaacttgttct 420

---

>dbj|D32003.1| Chlamydomonas reinhardtii mRNA for chloroplast Rieske Fe-S
           precursor protein, complete cds
          Length = 1436

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 220 agggccagcgacagaggtgcaggtccacggacaaccttgccctggttgttgtactgggat 279
           |||||||||||||| || || || |||||||| ||||||||||    ||||||||| || 
Sbjct: 576 agggccagcgacaggggagcggggccacggaccaccttgccctcagcgttgtactgagag 517

                                                             
Query: 280 ccatggcaagggcagaggaacttgttctnggcggcgttccaaggcacgac 329
           || |||||||||||   ||||||||||| ||| ||   ||||||||||||
Sbjct: 516 ccgtggcaagggcacttgaacttgttctcggccgccacccaaggcacgac 467

---

>emb|X63605.1|PSPETC P.sativum petC mRNA for chloroplast Rieske FeS protein
          Length = 880

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 268 ttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 591 ttgtactgagatccatggcaggggcagatgaacttgttct 552

---

>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete sequence
          Length = 101563

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                      
Query: 268    ttgtactgggatccatggcaagggcagaggaacttgttct 307
              ||||| ||||||||||||||||| || |||||||||||||
Sbjct: 101211 ttgtattgggatccatggcaaggacataggaacttgttct 101172

---

>gb|AY300039.1| Solanum tuberosum putative Rieske Fe-S protein precursor (FeS)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 693

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 265 ttgttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||||| || ||||||||||||||||| | |||||||||||
Sbjct: 557 ttgttgtattgagatccatggcaagggcaaatgaacttgttct 515

---

>dbj|AB025003.1| Cicer arietinum mRNA for plastoquinol-plastocyanin reductase,
           partial cds
          Length = 479

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 268 ttgtactgggatccatggcaagggcagaggaacttgttctnggcgg 313
           |||||||| ||||||||||| |||||||  |||||||||| |||||
Sbjct: 361 ttgtactgagatccatggcaggggcagataaacttgttctcggcgg 316

---

>ref|NM_116566.3| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)
           AT4G03280 (PETC) transcript variant AT4G03280.1 mRNA,
           complete cds
          Length = 963

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 267 gttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 678 gttgtattgggatccatggcaaggacatagaaacttgttct 638

---

>ref|NM_178964.1| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)
           AT4G03280 (PETC) transcript variant AT4G03280.2 mRNA,
           complete cds
          Length = 1062

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 267 gttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 777 gttgtattgggatccatggcaaggacatagaaacttgttct 737

---

>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM,
             complete sequence
          Length = 136335

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 267   gttgtactgggatccatggcaagggcagaggaacttgttct 307
             |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 74269 gttgtattgggatccatggcaaggacatagaaacttgttct 74229

---

>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8
          Length = 195429

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 267   gttgtactgggatccatggcaagggcagaggaacttgttct 307
             |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 92641 gttgtattgggatccatggcaaggacatagaaacttgttct 92601

---

>emb|AJ292972.1|ATH292972 Arabidopsis thaliana petC gene for Rieske FeS protein, exons 1-5
          Length = 2145

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 267  gttgtactgggatccatggcaagggcagaggaacttgttct 307
            |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 1917 gttgtattgggatccatggcaaggacatagaaacttgttct 1877

---

>emb|AJ243702.1|ATH243702 Arabidopsis thaliana mRNA for rieske iron-sulfur protein precursor
           (petC gene)
          Length = 957

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 267 gttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 654 gttgtattgggatccatggcaaggacatagaaacttgttct 614

---

>gb|AY093726.1| Arabidopsis thaliana AT4g03280/F4C21_21 mRNA, complete cds
          Length = 633

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 267 gttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 492 gttgtattgggatccatggcaaggacatagaaacttgttct 452

---

>gb|AF410296.1|AF410296 Arabidopsis thaliana AT4g03280/F4C21_21 mRNA, complete cds
          Length = 1061

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 267 gttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 780 gttgtattgggatccatggcaaggacatagaaacttgttct 740

---

>gb|AF370566.1|AF370566 Arabidopsis thaliana putative component of cytochrome B6-F complex
           (F4C21.21) mRNA, complete cds
          Length = 732

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 267 gttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 549 gttgtattgggatccatggcaaggacatagaaacttgttct 509

---

>emb|BX826457.1|CNS0A4G1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB28ZC01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 532

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 267 gttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 252 gttgtattgggatccatggcaaggacatagaaacttgttct 212

---

>emb|BX827560.1|CNS0A2RQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS74ZE01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1358

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 267  gttgtactgggatccatggcaagggcagaggaacttgttct 307
            |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 1133 gttgtattgggatccatggcaaggacatagaaacttgttct 1093

---

>gb|AY267656.1| Bigelowiella natans Fe-S subunit of cytochrome c6f complex mRNA,
           complete cds; nuclear gene for plastid product
          Length = 1025

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 270 gtactgggatccatggcaagggca 293
           ||||||||||||||||||||||||
Sbjct: 653 gtactgggatccatggcaagggca 630

---

>emb|X06244.1|SORFES Spinach mRNA for Rieske FeS-precursor protein
          Length = 1024

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 229 gacagaggtgcaggtccacggacaaccttgccctggttgttgtactgggatccatggca 287
           |||| ||||||||| || || |||||  |||| ||||| ||||| ||||||||||||||
Sbjct: 683 gacaaaggtgcagggcctcgaacaactctgccttggttattgtattgggatccatggca 625

---

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 186     gacgaccttgccgtcgtcgacg 207
               ||||||||||||||||||||||
Sbjct: 1061182 gacgaccttgccgtcgtcgacg 1061203

---

>emb|X66009.1|NTRFES1 N.tabacum mRNA for chloroplast Rieske FeS precursor protein 1
          Length = 814

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 262 tggttgttgtactgggatccatggcaagggcagaggaacttgttct 307
           ||||||||||| || ||||||||||| ||||| |  ||||||||||
Sbjct: 592 tggttgttgtattgagatccatggcaggggcaaataaacttgttct 547

---

>emb|X64353.1|NTRFSCBFC N.tabacum mRNA for Rieske Fe/S protein of cytochrome b6/f complex
          Length = 833

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 262 tggttgttgtactgggatccatggcaagggcagaggaacttgttct 307
           ||||||||||| || ||||||||||| ||||| |  ||||||||||
Sbjct: 556 tggttgttgtattgagatccatggcaggggcaaataaacttgttct 511

---

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 180     cacgaagacgaccttgccgtcg 201
               ||||||||||||||||||||||
Sbjct: 3591632 cacgaagacgaccttgccgtcg 3591653

---

>gb|AY487229.1| Mycobacterium fortuitum PgaE gene, partial cds; putative
            transcription regulator, hypothetical protein, Erm(39),
            3355, and FolD genes, complete cds; and 3359 gene,
            partial cds
          Length = 4803

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 195  gccgtcgtcgacgtcggcgtga 216
            ||||||||||||||||||||||
Sbjct: 3357 gccgtcgtcgacgtcggcgtga 3336

---

>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster
          Length = 104326

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 180   cacgaagacgaccttgccgtcg 201
             ||||||||||||||||||||||
Sbjct: 46173 cacgaagacgaccttgccgtcg 46152

---

>emb|X76299.1|CRPETC C.reinhardtii petC gene
          Length = 1608

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                        
Query: 244  ccacggacaaccttgccctggttgttgtactgggatccatggcaagggcagaggaacttg 303
            |||||||| ||||||||||    ||||||||| || || |||||||||||   |||||||
Sbjct: 1171 ccacggaccaccttgccctcagcgttgtactgagagccgtggcaagggcacttgaacttg 1112

                    
Query: 304  ttctnggc 311
            |||| |||
Sbjct: 1111 ttctcggc 1104

---

>emb|BX826302.1|CNS0A381 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZB05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 790

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 267 gttgtactgggatccatggcaagggcagaggaacttgttct 307
           |||||| ||||||||||||||||| || |  ||||||||||
Sbjct: 553 gttgtattgggatccatggcaaggacataaaaacttgttct 513

---

>gb|AY826845.1| Pavlova lutheri clone PLCB61 chloroplast cytochrome b6 mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 640

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                       
Query: 270 gtactgggatccatggcaagggcagaggaacttgttctnggcggcgttccaaggcacgac 329
           |||||| || || ||||| ||||||| |||||| | ||  ||||||||||| ||||||||
Sbjct: 310 gtactgcgagccgtggcaggggcagatgaacttctgctgcgcggcgttccacggcacgac 251

---

>gb|AF110783.1|AF110783 Volvox carteri f. nagariensis clone G9 rieske iron-sulfur protein
           precursor (petC) mRNA, nuclear gene encoding chloroplast
           protein, complete cds
          Length = 1159

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                       
Query: 220 agggccagcgacagaggtgcaggtccacggacaaccttgccctggttgttgtactgggat 279
           |||||||  ||||| || ||||| |||||||| ||||||||||     |||||||| || 
Sbjct: 553 agggccaaagacagcggagcagggccacggaccaccttgccctcagcattgtactgagag 494

                                           
Query: 280 ccatggcaagggcagaggaacttgttctnggc 311
           || |||||||||||   ||||||||||| |||
Sbjct: 493 ccgtggcaagggcacttgaacttgttctcggc 462

---

>gb|AC120788.7| Mus musculus chromosome 14, clone RP23-279B13, complete sequence
          Length = 215810

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    ttaggactggcaggaggctt 85
             ||||||||||||||||||||
Sbjct: 14455 ttaggactggcaggaggctt 14436

---

>ref|XM_659574.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7062.2), mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 cgaagacgaccttgccgtcg 201
           ||||||||||||||||||||
Sbjct: 976 cgaagacgaccttgccgtcg 957

---

>ref|XM_754954.1| Ustilago maydis 521 hypothetical protein (UM03900.1) partial mRNA
          Length = 3015

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 284  ggcaagggcagaggaacttg 303
            ||||||||||||||||||||
Sbjct: 1647 ggcaagggcagaggaacttg 1628

---

>gb|AC125332.3| Mus musculus BAC clone RP23-113I20 from 3, complete sequence
          Length = 220068

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    catggcaagggcagaggaac 300
              ||||||||||||||||||||
Sbjct: 148711 catggcaagggcagaggaac 148730

---

>gb|AC121928.2| Mus musculus BAC clone RP24-204F1 from 3, complete sequence
          Length = 178387

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    catggcaagggcagaggaac 300
              ||||||||||||||||||||
Sbjct: 151789 catggcaagggcagaggaac 151770

---

>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the
             HLA-DPA1 gene for major histocompatibility complex, class
             II, DP alpha 1, the HLA-DPB1 gene for major
             histocompatibility complex, class II, DP beta 1, a
             ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2
             pseudogene for major histocompatibility complex, class II,
             DP alpha 2, a pseudogene similar to part of collagens, a
             novel protein similar to major histocompatibility complex,
             class II, DP beta 2 (pseudogene), a major
             histocompatibility complex, class II, DP beta 1
             pseudogene, two putative novel transcripts, the COL11A2
             gene for collagen, type XI, alpha 2, the RXRB gene for
             retinoid X receptor, beta, the HKE4 gene for HLA-class II
             region expressed gene KE4, the 5' end of the HSD17B8 gene
             for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG
             islands, complete sequence
          Length = 187964

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   tggcaagggcagaggaactt 302
             ||||||||||||||||||||
Sbjct: 38046 tggcaagggcagaggaactt 38027

---

>emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on chromosome 6 Contains the
             HLA-DOA, HLA-DPA1 and HLA-DPB1 genes for major
             histocompatibility complex class II proteins DO alpha, DP
             alpha 1 and DP beta 1, the HLA-DPA2 major
             histocompatibility complex class II DP alpha 2 pseudogene,
             ribosomal protein L32 pseudogene RPL32P1, a pseudogene
             similar to part of collagens, the 5' end of an HLA class
             II histocompatibility antigen D or S beta pseudogene, the
             5' end of a novel protein similar to major
             histocompatibility complex class II DP beta 1 precursor
             and a CpG island, complete sequence
          Length = 124899

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   tggcaagggcagaggaactt 302
             ||||||||||||||||||||
Sbjct: 63756 tggcaagggcagaggaactt 63737

---

>gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 map 14, complete sequence
          Length = 180338

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     ttaggactggcaggaggctt 85
              ||||||||||||||||||||
Sbjct: 173120 ttaggactggcaggaggctt 173101

---

>emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chromosome 6, complete
             sequence
          Length = 119898

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   tggcaagggcagaggaactt 302
             ||||||||||||||||||||
Sbjct: 58192 tggcaagggcagaggaactt 58173

---

>emb|BX826362.1|CNS0A4FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB19ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 714

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 267 gttgtactgggatccatggcaagg 290
           |||||| |||||||||||||||||
Sbjct: 678 gttgtattgggatccatggcaagg 655

---

>gb|AC012451.8| Homo sapiens BAC clone RP11-414K19 from 2, complete sequence
          Length = 188121

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    ggcaagggcagaggaacttg 303
              ||||||||||||||||||||
Sbjct: 179433 ggcaagggcagaggaacttg 179452

---

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     cgaccttgccgtcgtcgacg 207
               ||||||||||||||||||||
Sbjct: 2036408 cgaccttgccgtcgtcgacg 2036389

---

>gb|U04283.1|SAPHSA Streptomyces antibioticus IMRU3720 phenoxazinone synthase (phsA)
            gene, complete cds
          Length = 2302

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  gccgtcgtcgacgtcggcgt 214
            ||||||||||||||||||||
Sbjct: 1257 gccgtcgtcgacgtcggcgt 1238


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,772,986
Number of Sequences: 3902068
Number of extensions: 1772986
Number of successful extensions: 32124
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 31781
Number of HSP's gapped (non-prelim): 342
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---