>Y677_TREPA (O83683) Hypothetical protein TP0677|
          Length = 202

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 29  KLHRCPDCFLVDLRRSXRNFATDV 100
           ++H C DC +  +RR+ R FA DV
Sbjct: 45  QVHACVDCGMRGIRRAVRRFAADV 68

>ODPB_STAES (Q8CPN2) Pyruvate dehydrogenase E1 component subunit beta (EC|
           1.2.4.1)
          Length = 325

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 160 PVMAIAFIGALYFKLDPHTGDISR-KVTGRSSKVDEKTIRTP 38
           PVM I F+G +Y   D   G I+R +     +K    TIRTP
Sbjct: 77  PVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTP 118

>ODPB_STAEQ (Q5HQ75) Pyruvate dehydrogenase E1 component subunit beta (EC|
           1.2.4.1)
          Length = 325

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 160 PVMAIAFIGALYFKLDPHTGDISR-KVTGRSSKVDEKTIRTP 38
           PVM I F+G +Y   D   G I+R +     +K    TIRTP
Sbjct: 77  PVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTP 118

>BACS2_NATPH (P42196) Sensory rhodopsin-2 (Sensory rhodopsin II) (SR-II)|
          Length = 239

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 169 AIFPVMAIAFIGALYFKLDPHTGDISRKVTGRSS 68
           A+F + A+AF+G +Y+ + P T   S++ +G  S
Sbjct: 125 ALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKS 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,180,983
Number of Sequences: 219361
Number of extensions: 223912
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)