ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal24a24 |
|---|---|
| Clone Library Name | barley_pub |
>ALA2_PANMI (P34106) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)| (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) Length = 482 Score = 114 bits (285), Expect = 2e-25 Identities = 51/91 (56%), Positives = 68/91 (74%) Frame = -3 Query: 517 FNSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 338 FN+ + CN EGAMY FPQI LP++A++ AK+A K PD +Y L+LLE+TGI VPGSG Sbjct: 382 FNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSG 441 Query: 337 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKF 245 FGQ G +H+R TILP E+ +PA+++ FK F Sbjct: 442 FGQVPGTWHIRCTILPQEDKIPAVITRFKAF 472
>ALA2_HORVU (P52894) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)| (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) Length = 482 Score = 112 bits (281), Expect = 5e-25 Identities = 52/91 (57%), Positives = 65/91 (71%) Frame = -3 Query: 517 FNSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 338 FN + CN EGAMY FPQI LPQ+A++ AK+A K PD +Y L+LLE+TGI VPGSG Sbjct: 382 FNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSG 441 Query: 337 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKF 245 FGQ G +H R TILP E+ +PA++S F F Sbjct: 442 FGQVPGTWHFRCTILPQEDKIPAVISRFTVF 472
>ALAT_HUMAN (P24298) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 103 bits (258), Expect = 2e-22 Identities = 45/91 (49%), Positives = 63/91 (69%) Frame = -3 Query: 517 FNSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 338 FN + CN +GAMYSFP+++LP RA++ A+ G PD+++CL+LLE TGI VPGSG Sbjct: 396 FNEAPGISCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSG 455 Query: 337 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKF 245 FGQ+EG +H R TILP E + ++ +F Sbjct: 456 FGQREGTYHFRMTILPPLEKLRLLLEKLSRF 486
>ALAT_MOUSE (Q8QZR5) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 101 bits (251), Expect = 1e-21 Identities = 46/91 (50%), Positives = 61/91 (67%) Frame = -3 Query: 517 FNSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 338 FN + CN +GAMYSFPQI+LP +A+ A+ G PD+++CL LLE TGI VPGSG Sbjct: 396 FNEAPGIRCNPVQGAMYSFPQIQLPLKAVQRAQDLGLAPDMFFCLCLLEETGICVVPGSG 455 Query: 337 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKF 245 FGQ+EG +H R TILP E + ++ + F Sbjct: 456 FGQQEGTYHFRMTILPPMEKLRVLLEKLRHF 486
>ALAT_RAT (P25409) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 99.8 bits (247), Expect = 4e-21 Identities = 45/91 (49%), Positives = 60/91 (65%) Frame = -3 Query: 517 FNSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 338 FN + CN +GAMYSFPQ++LP +A+ A+ G PD+++CL LLE TGI VPGSG Sbjct: 396 FNEAPGIRCNPVQGAMYSFPQVQLPLKAVQRAQELGLAPDMFFCLCLLEETGICVVPGSG 455 Query: 337 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKF 245 FGQ+EG +H R TILP E + ++ F Sbjct: 456 FGQQEGTYHFRMTILPPMEKLRLLLEKLSHF 486
>ALAM_YEAST (P52893) Putative alanine aminotransferase, mitochondrial precursor| (EC 2.6.1.2) (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 592 Score = 89.4 bits (220), Expect = 6e-18 Identities = 42/75 (56%), Positives = 52/75 (69%) Frame = -3 Query: 517 FNSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 338 FNS + C +GAMY FP+I LP +A+ A+ PD +YC KLLE+TGI TVPGSG Sbjct: 495 FNSLEGIECQKPQGAMYLFPKIDLPFKAVQEARHLELTPDEFYCKKLLESTGICTVPGSG 554 Query: 337 FGQKEGVFHLRTTIL 293 FGQ+ G +HLRTT L Sbjct: 555 FGQEPGTYHLRTTFL 569
>ALAT_YEAST (P52892) Putative alanine aminotransferase (EC 2.6.1.2)| (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 507 Score = 86.3 bits (212), Expect = 5e-17 Identities = 38/75 (50%), Positives = 52/75 (69%) Frame = -3 Query: 517 FNSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 338 F + C +GAMY FP++ LP++A+ ++ G EPD +YC LLE+TGI TVPGSG Sbjct: 410 FKELEGIECQKPQGAMYLFPRLVLPKKALCESERLGIEPDEFYCTSLLESTGICTVPGSG 469 Query: 337 FGQKEGVFHLRTTIL 293 FGQ+ G +H+RTT L Sbjct: 470 FGQRPGTYHVRTTFL 484
>ALAT_SCHPO (Q10334) Putative alanine aminotransferase (EC 2.6.1.2)| (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 505 Score = 70.5 bits (171), Expect = 3e-12 Identities = 32/69 (46%), Positives = 45/69 (65%) Frame = -3 Query: 499 VVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEG 320 V C GAMY P + LP++ + AK+ +PD +Y ++LL+ +GI VPGSGFGQ EG Sbjct: 415 VSCLEPHGAMYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVVPGSGFGQPEG 474 Query: 319 VFHLRTTIL 293 +H+R T L Sbjct: 475 DYHIRITFL 483
>AAT1_BACSU (P53001) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 393 Score = 37.4 bits (85), Expect = 0.025 Identities = 23/59 (38%), Positives = 29/59 (49%) Frame = -3 Query: 493 CNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGV 317 C EGA Y FP A + A+S G + + LLE ++ VPGSGFG E V Sbjct: 315 CVKPEGAFYLFPN------AKEAAQSCGFKDVDEFVKALLEEEKVAIVPGSGFGSPENV 367
>AAT_BACST (Q59228) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 393 Score = 35.0 bits (79), Expect = 0.12 Identities = 25/71 (35%), Positives = 31/71 (43%) Frame = -3 Query: 493 CNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGVF 314 C +GA Y FP R + A AG + LLE ++ VPGSGFG + V Sbjct: 315 CVKPQGAFYLFPNAR------EAAAMAGCRTVDEFVAALLEEAKVALVPGSGFGAPDNVR 368 Query: 313 HLRTTILPAEE 281 T L A E Sbjct: 369 LSYATSLDALE 379
>AAT_RHILP (O86459) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 400 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -3 Query: 514 NSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGISTVPGS 341 N +VC EGA Y +P + + +GK E D + +LLE+ G++ V GS Sbjct: 310 NQAKGIVCPVPEGAFYVYPSCK---GLIGKTAPSGKVIETDEDFVSELLESEGVAVVHGS 366 Query: 340 GFG 332 FG Sbjct: 367 AFG 369
>AATB2_RHIME (Q06191) Aspartate aminotransferase B (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 410 Score = 34.7 bits (78), Expect = 0.16 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -3 Query: 514 NSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGISTVPGS 341 N+ + C EGA Y+F R + +GK E D +C LLE + ++ VPGS Sbjct: 320 NAIEGLDCRVPEGAFYTFSGCAGVARRVT---PSGKRIESDTDFCAYLLEDSHVAVVPGS 376 Query: 340 GFG 332 FG Sbjct: 377 AFG 379
>AAT_SULTO (Q972A2) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 399 Score = 34.3 bits (77), Expect = 0.21 Identities = 23/80 (28%), Positives = 39/80 (48%) Frame = -3 Query: 484 TEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGVFHLR 305 ++GA Y FP I ++ K A + LKL+E G++T+PG F + G +R Sbjct: 320 SQGAFYMFPFIG------EILKKANLSVKDF-SLKLIEEKGVTTIPGEVFPLEVGKDFVR 372 Query: 304 TTILPAEEDMPAIMSSFKKF 245 + E+D+ + K+F Sbjct: 373 LSFAVKEDDIREGIKRMKEF 392
>AATB1_RHIME (P58350) Aspartate aminotransferase B (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 410 Score = 32.3 bits (72), Expect = 0.80 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = -3 Query: 514 NSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGISTVPGS 341 N+ + C EGA Y+F + +GK + D +C LLE ++ VPGS Sbjct: 320 NAIDGLDCRVPEGAFYTFSGCA---GVLGKVTPSGKRIKTDTDFCAYLLEDAHVAVVPGS 376 Query: 340 GFG 332 FG Sbjct: 377 AFG 379
>AAT_STRVG (Q60013) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 397 Score = 32.3 bits (72), Expect = 0.80 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Frame = -3 Query: 514 NSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEP--DVYYCLKLLEATGISTVPGS 341 N V C EGA Y++P + + + + GK P V +L+ ++ VPG Sbjct: 307 NEIDGVFCPTPEGAFYAYPSV----KELLGKEIRGKRPQSSVELAALILDEVEVAVVPGE 362 Query: 340 GFGQKEGVFHLRTTILPAEEDMPAIMSSFKK 248 FG +LR + +ED+ +S +K Sbjct: 363 AFGTPG---YLRLSYALGDEDLVEGVSRIQK 390
>UL94_HCMVA (P16800) Tegument protein UL94| Length = 345 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -1 Query: 207 RL*XENKNHRVYILI*CCSFLPAIEVD*LAVSCN----YGEENWLLCFICIGGRYXRKHS 40 +L +++ HR Y + C S + + E D + C Y + W++CF C GRY + Sbjct: 26 KLVGKSRKHREYRAVACRSTIFSPEDDSSCILCQLLLLYRDGEWIICF-CCNGRYQGHYG 84 Query: 39 V 37 V Sbjct: 85 V 85
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit| 4) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = -2 Query: 395 LLLPQASGSHWNIHCSRLRFWSERRGVPSEDNDPA 291 +L P +SGSH I S L SE +PSED DPA Sbjct: 20 ILDPGSSGSHVEISESSLESDSEADSLPSEDLDPA 54
>AATA_RHIME (Q02635) Aspartate aminotransferase A (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 400 Score = 31.6 bits (70), Expect = 1.4 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = -3 Query: 514 NSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSA--GK--EPDVYYCLKLLEATGISTVP 347 N + C EGA Y +P A + K+A GK E D + +LLE G++ V Sbjct: 310 NQAKGISCPTPEGAFYVYPSC-----AGLIGKTAPSGKVIETDEDFVSELLETEGVAVVH 364 Query: 346 GSGFG 332 GS FG Sbjct: 365 GSAFG 369
>AAT_MYCTU (P63498) Probable aspartate aminotransferase (EC 2.6.1.1)| (Transaminase A) (ASPAT) Length = 429 Score = 31.2 bits (69), Expect = 1.8 Identities = 27/90 (30%), Positives = 35/90 (38%) Frame = -3 Query: 514 NSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGF 335 N V C GA+Y+FP RL D+ + D L LL + I G+GF Sbjct: 343 NEIPGVSCVKPAGALYAFP--RLDPEVYDI------DDDEQLVLDLLLSEKILVTQGTGF 394 Query: 334 GQKEGVFHLRTTILPAEEDMPAIMSSFKKF 245 HLR LP D+ A + F Sbjct: 395 NW-PAPDHLRLVTLPWSRDLAAAIERLGNF 423
>AAT_MYCBO (P63499) Probable aspartate aminotransferase (EC 2.6.1.1)| (Transaminase A) (ASPAT) Length = 429 Score = 31.2 bits (69), Expect = 1.8 Identities = 27/90 (30%), Positives = 35/90 (38%) Frame = -3 Query: 514 NSCXNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGF 335 N V C GA+Y+FP RL D+ + D L LL + I G+GF Sbjct: 343 NEIPGVSCVKPAGALYAFP--RLDPEVYDI------DDDEQLVLDLLLSEKILVTQGTGF 394 Query: 334 GQKEGVFHLRTTILPAEEDMPAIMSSFKKF 245 HLR LP D+ A + F Sbjct: 395 NW-PAPDHLRLVTLPWSRDLAAAIERLGNF 423
>YARA_PROST (P46117) Putative HTH-type transcriptional regulator in aarA| 3'region Length = 282 Score = 30.8 bits (68), Expect = 2.3 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -3 Query: 412 GKEPDVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILP 290 G PD+ + LKL G ST+ + FGQ E V L +LP Sbjct: 190 GNTPDINHMLKLANKKGCSTIVLTRFGQDEAV-RLADLVLP 229
>THIC_RHILO (Q98AZ3) Thiamine biosynthesis protein thiC| Length = 619 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -3 Query: 460 PQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEE 281 PQIR+P R + V +AG+ P + Y + +G T P ++G+ LR + A Sbjct: 35 PQIRVPMREISVHPTAGEPPVIVY-----DPSGPYTDPTVETSIEKGLARLRHEWITARG 89 Query: 280 DMPA 269 D+ A Sbjct: 90 DVEA 93
>HAGA2_PORGI (Q51845) Hemagglutinin A precursor| Length = 2628 Score = 29.6 bits (65), Expect = 5.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 282 SSAGRIVVLRWNTPSF*PKPEPGTVDI 362 S+ G+ V L+W+ P+ P P PGT + Sbjct: 483 SAVGQKVTLKWDAPNGTPNPNPGTTTL 509
>HAGA1_PORGI (P59915) Hemagglutinin A precursor| Length = 2164 Score = 29.6 bits (65), Expect = 5.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 282 SSAGRIVVLRWNTPSF*PKPEPGTVDI 362 S+ G+ V L+W+ P+ P P PGT + Sbjct: 1387 SAVGQKVTLKWDAPNGTPNPNPGTTTL 1413 Score = 29.6 bits (65), Expect = 5.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 282 SSAGRIVVLRWNTPSF*PKPEPGTVDI 362 S+ G+ V L+W+ P+ P P PGT + Sbjct: 935 SAVGQKVTLKWDAPNGTPNPNPGTTTL 961 Score = 29.6 bits (65), Expect = 5.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 282 SSAGRIVVLRWNTPSF*PKPEPGTVDI 362 S+ G+ V L+W+ P+ P P PGT + Sbjct: 483 SAVGQKVTLKWDAPNGTPNPNPGTTTL 509
>NUOL_CAMJE (Q9PMA7) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH| dehydrogenase I, chain L) (NDH-1, chain L) Length = 596 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +3 Query: 57 ISPLYI*SIATSFLHHSYSSQLINQLQLLVEKSSIILIC 173 +SPL + +I F HS+ L +L + ++ I++IC Sbjct: 446 MSPLMVLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMIC 484 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,789,460 Number of Sequences: 219361 Number of extensions: 1285952 Number of successful extensions: 3310 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3228 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3309 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
