ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal24a22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473136.1| Oryza sativa (japonica cultivar-group), predic... 96 2e-16
2dbj|AK103972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
3dbj|AK072655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
4gb|AY104214.1| Zea mays PCO099155 mRNA sequence 96 2e-16
5emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4,... 58 4e-05
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
7gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, ... 50 0.010
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.010
10gb|CP000316.1| Polaromonas sp. JS666, complete genome 46 0.16
11gb|AY567499.1| HIV-1 isolate SUR05Env from India envelope glycop... 44 0.64
12gb|AF443111.1| HIV-1 isolate 00BW3876.9 from Botswana, complete ... 44 0.64
13gb|AY137041.1| HIV-1 isolate ZA044e01 from South Africa envelope... 44 0.64
14emb|AJ404193.1|HIM404193 Human immunodeficiency virus type 1 pro... 44 0.64
15gb|AF106351.1|AF106351 HIV-1 isolate TZB0091 from Tanzania, enve... 44 0.64
16emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chr... 44 0.64
17gb|AC165091.3| Mus musculus BAC clone RP23-25M19 from chromosome... 42 2.5
18gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome 42 2.5
19gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome 42 2.5
20emb|AL022720.1|HS357K22 Human DNA sequence from clone RP3-357K22... 42 2.5
21emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4,... 42 2.5
22emb|AL845160.8| Mouse DNA sequence from clone RP23-303O15 on chr... 42 2.5
23emb|AL954822.8| Zebrafish DNA sequence from clone CH211-222M15 i... 42 2.5
24emb|CT737394.2| Pan troglodytes chromosome X clone PTB-130F19 ma... 42 2.5
25gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 42 2.5
26dbj|AB050908.1| Human immunodeficiency virus type 1 proviral env... 42 2.5
27dbj|AB050907.1| Human immunodeficiency virus type 1 proviral env... 42 2.5
28gb|AC133586.12| Mus musculus chromosome 15, clone RP24-456H16, c... 40 9.9
29gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, com... 40 9.9
30gb|AC164418.10| Mus musculus chromosome 1, clone RP23-431J24, co... 40 9.9
31gb|AY522332.4| Agrotis segetum granulovirus, complete genome 40 9.9
32gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, com... 40 9.9
33gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome... 40 9.9
34gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, comp... 40 9.9
35gb|AC133082.3| Mus musculus BAC clone RP24-298C1 from chromosome... 40 9.9
36emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, compl... 40 9.9
37gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, co... 40 9.9
38gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 40 9.9
39gb|AC117756.8| Mus musculus chromosome 1, clone RP24-419N8, comp... 40 9.9
40gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, co... 40 9.9
41gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete se... 40 9.9
42gb|AC162931.4| Mus musculus BAC clone RP23-213P10 from chromosom... 40 9.9
43emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chro... 40 9.9
44emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C... 40 9.9
45emb|AL096868.15|HSJ493D19 Human DNA sequence from clone RP3-493D... 40 9.9
46emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 9.9
47emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 9.9
48emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, ... 40 9.9
49gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete seq... 40 9.9
50gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complet... 40 9.9
51gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complet... 40 9.9
52gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complet... 40 9.9
53gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete... 40 9.9
54gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, compl... 40 9.9
55gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, co... 40 9.9
56emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chr... 40 9.9
57emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in l... 40 9.9
58emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chr... 40 9.9
59emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-9... 40 9.9
60emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chr... 40 9.9 
>ref|XM_473136.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2499

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                        
Query: 607  gcctccaattctcagcaagtcttctcttctccctttgcttgtccatgttcacacaaatct 666
            |||||||||| |||||||| |||| ||| || ||||||||||| ||| ||||||| | ||
Sbjct: 2422 gcctccaattttcagcaagccttcgcttttctctttgcttgtcaatgctcacacacacct 2363

                                                                        
Query: 667  cttgcccagaatcttgaagagcttgcaacggttccacacgatcctggccaataataacaa 726
            ||||||||||||  |||||||||||||| ||||| |   ||||||| ||||||| |||||
Sbjct: 2362 cttgcccagaattctgaagagcttgcaagggttctatttgatcctgaccaataacaacaa 2303
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>dbj|AK103972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C11, full
           insert sequence
          Length = 1057

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                       
Query: 607 gcctccaattctcagcaagtcttctcttctccctttgcttgtccatgttcacacaaatct 666
           |||||||||| |||||||| |||| ||| || ||||||||||| ||| ||||||| | ||
Sbjct: 868 gcctccaattttcagcaagccttcgcttttctctttgcttgtcaatgctcacacacacct 809

                                                                       
Query: 667 cttgcccagaatcttgaagagcttgcaacggttccacacgatcctggccaataataacaa 726
           ||||||||||||  |||||||||||||| ||||| |   ||||||| ||||||| |||||
Sbjct: 808 cttgcccagaattctgaagagcttgcaagggttctatttgatcctgaccaataacaacaa 749
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>dbj|AK072655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134D07, full
            insert sequence
          Length = 2707

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                        
Query: 607  gcctccaattctcagcaagtcttctcttctccctttgcttgtccatgttcacacaaatct 666
            |||||||||| |||||||| |||| ||| || ||||||||||| ||| ||||||| | ||
Sbjct: 2474 gcctccaattttcagcaagccttcgcttttctctttgcttgtcaatgctcacacacacct 2415

                                                                        
Query: 667  cttgcccagaatcttgaagagcttgcaacggttccacacgatcctggccaataataacaa 726
            ||||||||||||  |||||||||||||| ||||| |   ||||||| ||||||| |||||
Sbjct: 2414 cttgcccagaattctgaagagcttgcaagggttctatttgatcctgaccaataacaacaa 2355
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>gb|AY104214.1| Zea mays PCO099155 mRNA sequence
          Length = 1329

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                       
Query: 607 gcctccaattctcagcaagtcttctcttctccctttgcttgtccatgttcacacaaatct 666
           ||||||| |||||||  | ||||| ||| |||||||  ||||| ||||||||||| | ||
Sbjct: 798 gcctccagttctcagagactcttcgcttttccctttctttgtctatgttcacacagacct 739

                                                                       
Query: 667 cttgcccagaatcttgaagagcttgcaacggttccacacgatcctggccaataataacaa 726
           |||||||||||| |||||| |||||||| || || ||||||||||| ||||||| |||||
Sbjct: 738 cttgcccagaattttgaagtgcttgcaagggctcgacacgatcctgaccaataacaacaa 679
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>emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065L13,
             complete sequence
          Length = 103039

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                         
Query: 658   cacaaatctcttgcccagaatcttgaagagcttgcaacggttccacacgatcctggccaa 717
             |||||| ||||||||||||||  |||||||||||||| ||||| |   ||||||| ||||
Sbjct: 86939 cacaaacctcttgcccagaattctgaagagcttgcaagggttctatttgatcctgaccaa 86998

                      
Query: 718   taataacaa 726
             ||| |||||
Sbjct: 86999 taacaacaa 87007



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 607   gcctccaattctcagcaagtcttctcttctccctttgcttgtccatgttcacaca 661
             |||||||||| |||||||| |||| ||| || ||||||||||| ||| |||||||
Sbjct: 86762 gcctccaattttcagcaagccttcgcttttctctttgcttgtcaatgctcacaca 86816
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 658      cacaaatctcttgcccagaatcttgaagagcttgcaacggttccacacgatcctggccaa 717
                |||||| ||||||||||||||  |||||||||||||| ||||| |   ||||||| ||||
Sbjct: 25509446 cacaaacctcttgcccagaattctgaagagcttgcaagggttctatttgatcctgaccaa 25509505

                         
Query: 718      taataacaa 726
                ||| |||||
Sbjct: 25509506 taacaacaa 25509514



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 607      gcctccaattctcagcaagtcttctcttctccctttgcttgtccatgttcacaca 661
                |||||||||| |||||||| |||| ||| || ||||||||||| ||| |||||||
Sbjct: 25509269 gcctccaattttcagcaagccttcgcttttctctttgcttgtcaatgctcacaca 25509323



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 626      tcttctcttctccctttgctt 646
                |||||||||||||||||||||
Sbjct: 18814109 tcttctcttctccctttgctt 18814129
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>gb|AC123528.2| Oryza sativa chromosome 11 clone  OSJNBa0078E03, complete sequence
          Length = 149493

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 626    tcttctcttctccctttgcttgtcc 650
              |||||||||||||||||||||||||
Sbjct: 146107 tcttctcttctccctttgcttgtcc 146131
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 626     tcttctcttctccctttgcttgtcc 650
               |||||||||||||||||||||||||
Sbjct: 1781936 tcttctcttctccctttgcttgtcc 1781960
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 626     tcttctcttctccctttgcttgtcc 650
               |||||||||||||||||||||||||
Sbjct: 1779657 tcttctcttctccctttgcttgtcc 1779681
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 299     atcttcaacggcaaaacgcggaa 321
               |||||||||||||||||||||||
Sbjct: 4679031 atcttcaacggcaaaacgcggaa 4679053
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>gb|AY567499.1| HIV-1 isolate SUR05Env from India envelope glycoprotein (env) gene,
           partial cds
          Length = 594

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 476 gacaaataatatcaaaacaata 497
           ||||||||||||||||||||||
Sbjct: 33  gacaaataatatcaaaacaata 54
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>gb|AF443111.1| HIV-1 isolate 00BW3876.9 from Botswana, complete genome
          Length = 9030

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 476  gacaaataatatcaaaacaata 497
            ||||||||||||||||||||||
Sbjct: 6400 gacaaataatatcaaaacaata 6421
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>gb|AY137041.1| HIV-1 isolate ZA044e01 from South Africa envelope glycoprotein
           (env) gene, partial cds
          Length = 576

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 476 gacaaataatatcaaaacaata 497
           ||||||||||||||||||||||
Sbjct: 30  gacaaataatatcaaaacaata 51
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>emb|AJ404193.1|HIM404193 Human immunodeficiency virus type 1 proviral partial env gene for
           envelope glycoprotein gp120, strain C_97DC.MBTB11
          Length = 576

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 476 gacaaataatatcaaaacaata 497
           ||||||||||||||||||||||
Sbjct: 15  gacaaataatatcaaaacaata 36
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>gb|AF106351.1|AF106351 HIV-1 isolate TZB0091 from Tanzania, envelope glycoprotein, C2-C5
           region (env) gene, partial cds
          Length = 663

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 476 gacaaataatatcaaaacaata 497
           ||||||||||||||||||||||
Sbjct: 18  gacaaataatatcaaaacaata 39
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>emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chromosome 2, complete
             sequence
          Length = 102448

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 229   tgataacatacacatgttacag 250
             ||||||||||||||||||||||
Sbjct: 71022 tgataacatacacatgttacag 71043
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>gb|AC165091.3| Mus musculus BAC clone RP23-25M19 from chromosome 17, complete sequence
          Length = 198085

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 626   tcttctcttctccctttgctt 646
             |||||||||||||||||||||
Sbjct: 42125 tcttctcttctccctttgctt 42145
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>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 706    gatcctggccaataataacaa 726
              |||||||||||||||||||||
Sbjct: 171394 gatcctggccaataataacaa 171414
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>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 706    gatcctggccaataataacaa 726
              |||||||||||||||||||||
Sbjct: 164104 gatcctggccaataataacaa 164124
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>emb|AL022720.1|HS357K22 Human DNA sequence from clone RP3-357K22 on chromosome Xq27.1-27.3,
              complete sequence
          Length = 145638

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 507    tctttcagtatttcatttatt 527
              |||||||||||||||||||||
Sbjct: 126645 tctttcagtatttcatttatt 126665
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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
             complete sequence
          Length = 143093

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 626   tcttctcttctccctttgctt 646
             |||||||||||||||||||||
Sbjct: 30019 tcttctcttctccctttgctt 30039
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>emb|AL845160.8| Mouse DNA sequence from clone RP23-303O15 on chromosome 2, complete
              sequence
          Length = 170074

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 477    acaaataatatcaaaacaata 497
              |||||||||||||||||||||
Sbjct: 146989 acaaataatatcaaaacaata 147009
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>emb|AL954822.8| Zebrafish DNA sequence from clone CH211-222M15 in linkage group 15,
              complete sequence
          Length = 219495

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     ctgaataaattgattgttgaa 37
              |||||||||||||||||||||
Sbjct: 167884 ctgaataaattgattgttgaa 167864
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>emb|CT737394.2| Pan troglodytes chromosome X clone PTB-130F19 map Xq28, complete
             sequence
          Length = 188890

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 507   tctttcagtatttcatttatt 527
             |||||||||||||||||||||
Sbjct: 81068 tctttcagtatttcatttatt 81088
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>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 706    gatcctggccaataataacaa 726
              |||||||||||||||||||||
Sbjct: 277924 gatcctggccaataataacaa 277904
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>dbj|AB050908.1| Human immunodeficiency virus type 1 proviral env gene, C2-V3
           loop-C3 region, partial cds, isolate:patiant:99ZM18
          Length = 279

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 477 acaaataatatcaaaacaata 497
           |||||||||||||||||||||
Sbjct: 34  acaaataatatcaaaacaata 54
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>dbj|AB050907.1| Human immunodeficiency virus type 1 proviral env gene, C2-V3
           loop-C3 region, partial cds, isolate:patiant:99ZM13
          Length = 279

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 477 acaaataatatcaaaacaata 497
           |||||||||||||||||||||
Sbjct: 34  acaaataatatcaaaacaata 54
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>gb|AC133586.12| Mus musculus chromosome 15, clone RP24-456H16, complete sequence
          Length = 149834

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 518   ttcatttattattcagtccctctc 541
             |||||||||||||||||| |||||
Sbjct: 42028 ttcatttattattcagtctctctc 42005
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>gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, complete sequence
          Length = 196086

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 468    aaccctgagacaaataatat 487
              ||||||||||||||||||||
Sbjct: 193926 aaccctgagacaaataatat 193907
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>gb|AC164418.10| Mus musculus chromosome 1, clone RP23-431J24, complete sequence
          Length = 189965

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ctgggtgaactcactcagga 193
             ||||||||||||||||||||
Sbjct: 17435 ctgggtgaactcactcagga 17416
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>gb|AY522332.4| Agrotis segetum granulovirus, complete genome
          Length = 131680

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    tcatctttcatgtcaaaatc 383
              ||||||||||||||||||||
Sbjct: 117465 tcatctttcatgtcaaaatc 117446
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>gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, complete sequence
          Length = 175179

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ctgggtgaactcactcagga 193
             ||||||||||||||||||||
Sbjct: 57571 ctgggtgaactcactcagga 57552
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>gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome 14, complete sequence
          Length = 174973

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 173   tctgggtgaactcactcaggacaa 196
             ||||||| ||||||||||||||||
Sbjct: 42400 tctgggttaactcactcaggacaa 42377
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>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence
          Length = 215326

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   cccaagataaactgtgataa 234
             ||||||||||||||||||||
Sbjct: 82295 cccaagataaactgtgataa 82276
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>gb|AC133082.3| Mus musculus BAC clone RP24-298C1 from chromosome Y, complete sequence
          Length = 152853

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 631   tcttctccctttgcttgtccatgt 654
             |||||||||||| |||||||||||
Sbjct: 95870 tcttctccctttccttgtccatgt 95893
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>emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, complete sequence
          Length = 246237

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    aacaaaaatatttcaccaca 214
              ||||||||||||||||||||
Sbjct: 104631 aacaaaaatatttcaccaca 104612
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>gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, complete sequence
          Length = 239758

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   aaccctgagacaaataatat 487
             ||||||||||||||||||||
Sbjct: 65133 aaccctgagacaaataatat 65152
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>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    ttcagtatttcatttattat 529
              ||||||||||||||||||||
Sbjct: 121309 ttcagtatttcatttattat 121328
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>gb|AC117756.8| Mus musculus chromosome 1, clone RP24-419N8, complete sequence
          Length = 174783

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 468    aaccctgagacaaataatat 487
              ||||||||||||||||||||
Sbjct: 109212 aaccctgagacaaataatat 109231
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>gb|AC102040.16| Mus musculus chromosome 18, clone RP23-273B8, complete sequence
          Length = 250880

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    tcttcaatcatctttcatgt 376
              ||||||||||||||||||||
Sbjct: 164357 tcttcaatcatctttcatgt 164376
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>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence
          Length = 138465

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   agtatttcatttattattca 532
             ||||||||||||||||||||
Sbjct: 14379 agtatttcatttattattca 14360
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>gb|AC162931.4| Mus musculus BAC clone RP23-213P10 from chromosome 9, complete sequence
          Length = 204861

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 500    tgcctcctctttcagtattt 519
              ||||||||||||||||||||
Sbjct: 140586 tgcctcctctttcagtattt 140605
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>emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chromosome 10 Contains part
             of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin
             G), complete sequence
          Length = 172177

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   agtatttcatttattattca 532
             ||||||||||||||||||||
Sbjct: 66400 agtatttcatttattattca 66381
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>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3,
             complete sequence
          Length = 122049

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   agacatacatataacatctg 176
             ||||||||||||||||||||
Sbjct: 55279 agacatacatataacatctg 55298
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>emb|AL096868.15|HSJ493D19 Human DNA sequence from clone RP3-493D19 on chromosome 6q14.3-16.1
              Contains part of the RNGTT gene for RNA guanylyltransferase
              and 5'-phosphatase (mRNA capping enzyme, CAP1A), complete
              sequence
          Length = 151761

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 660    caaatctcttgcccagaatc 679
              ||||||||||||||||||||
Sbjct: 132796 caaatctcttgcccagaatc 132777
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>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No.
            2
          Length = 198354

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  atctttcatgtcaaaatcat 385
            ||||||||||||||||||||
Sbjct: 2036 atctttcatgtcaaaatcat 2055
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>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1
          Length = 206420

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    atctttcatgtcaaaatcat 385
              ||||||||||||||||||||
Sbjct: 200292 atctttcatgtcaaaatcat 200311
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>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86
          Length = 198780

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   atctttcatgtcaaaatcat 385
             ||||||||||||||||||||
Sbjct: 54942 atctttcatgtcaaaatcat 54923
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>gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete sequence
          Length = 127642

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 513 agtatttcatttattattca 532
           ||||||||||||||||||||
Sbjct: 413 agtatttcatttattattca 432
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>gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complete sequence
          Length = 195930

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     acctgcctgaataaattgat 30
              ||||||||||||||||||||
Sbjct: 119486 acctgcctgaataaattgat 119467
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>gb|AC079988.6| Homo sapiens BAC clone RP11-795C1 from 2, complete sequence
          Length = 211305

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    cccaagataaactgtgataa 234
              ||||||||||||||||||||
Sbjct: 160071 cccaagataaactgtgataa 160052
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>gb|AC018733.8| Homo sapiens BAC clone RP11-337H6 from 2, complete sequence
          Length = 163117

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   atgcctcctctttcagtatt 518
             ||||||||||||||||||||
Sbjct: 93995 atgcctcctctttcagtatt 93976
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>gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete sequence
          Length = 171812

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   cccaagataaactgtgataa 234
             ||||||||||||||||||||
Sbjct: 59086 cccaagataaactgtgataa 59067
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>gb|AC154467.2| Mus musculus BAC clone RP24-151M24 from 14, complete sequence
          Length = 181941

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 389   tgaaggcatgcattcttgacagga 412
             ||||||||||| ||||||||||||
Sbjct: 69822 tgaaggcatgctttcttgacagga 69799
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>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence
          Length = 167135

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    cccaagataaactgtgataa 234
              ||||||||||||||||||||
Sbjct: 158166 cccaagataaactgtgataa 158147
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>emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chromosome 14, complete
             sequence
          Length = 161533

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   tctgggtgaactcactcaggacaa 196
             ||||||| ||||||||||||||||
Sbjct: 80282 tctgggttaactcactcaggacaa 80305
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>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20,
             complete sequence
          Length = 208922

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   acaacaaaaatatttcacca 212
             ||||||||||||||||||||
Sbjct: 73257 acaacaaaaatatttcacca 73276
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>emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chromosome 14, complete
              sequence
          Length = 217241

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 389    tgaaggcatgcattcttgacagga 412
              ||||||||||| ||||||||||||
Sbjct: 193023 tgaaggcatgctttcttgacagga 193046
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>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177792

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    atatttcaccacacccaaga 221
              ||||||||||||||||||||
Sbjct: 167469 atatttcaccacacccaaga 167488
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>emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chromosome 4, complete
             sequence
          Length = 219634

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 353   acattcttcaatcatctttcatgt 376
             |||||||||||| |||||||||||
Sbjct: 29643 acattcttcaattatctttcatgt 29620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,849,986
Number of Sequences: 3902068
Number of extensions: 7849986
Number of successful extensions: 153216
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152837
Number of HSP's gapped (non-prelim): 379
length of query: 726
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 703
effective length of database: 17,143,297,704
effective search space: 12051738285912
effective search space used: 12051738285912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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