Clone Information

BLAST Search Result

Clone Name	rbaal24a11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SSM1_YEAST (P53078) Protein SSM1	40	0.003
2	PPAX_LISMO (Q8Y4G3) Pyrophosphatase ppaX (EC 3.6.1.1)	35	0.11
3	PPAX_LISMF (Q71WU6) Pyrophosphatase ppaX (EC 3.6.1.1)	35	0.11
4	PPAX_LISIN (Q928B2) Pyrophosphatase ppaX (EC 3.6.1.1)	35	0.11
5	YHCW_BACSU (P54607) Hypothetical protein yhcW	35	0.14
6	YIEH_ECOLI (P31467) Phosphatase yieH (EC 3.1.3.-)	34	0.24
7	PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2...	33	0.31
8	YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-)	33	0.41
9	YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-)	33	0.41
10	PGMB_BACSU (O06995) Putative beta-phosphoglucomutase (EC 5.4.2.6...	33	0.41
11	GMHB_PASMU (Q9CK98) D,D-heptose 1,7-bisphosphate phosphatase (EC...	33	0.41
12	GPH1_PSEAE (Q9S586) Phosphoglycolate phosphatase 1 (EC 3.1.3.18)...	32	0.70
13	IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)	32	0.70
14	GMHB_ANETH (Q9AGY5) D,D-heptose 1,7-bisphosphate phosphatase (EC...	32	0.91
15	CBBY_RHOSH (P95649) Protein cbbY	32	0.91
16	KR109_HUMAN (P60411) Keratin-associated protein 10-9 (Keratin-as...	32	0.91
17	KR10C_HUMAN (P60413) Keratin-associated protein 10-12 (Keratin-a...	32	0.91
18	HORN_HUMAN (Q86YZ3) Hornerin	32	1.2
19	KR107_HUMAN (P60409) Keratin-associated protein 10-7 (Keratin-as...	32	1.2
20	KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-as...	32	1.2
21	KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-as...	32	1.2
22	PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2...	31	1.6
23	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	31	1.6
24	KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-as...	31	2.0
25	SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro...	31	2.0
26	MAML3_HUMAN (Q96JK9) Mastermind-like protein 3 (Mam-3)	31	2.0
27	RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)	30	2.7
28	PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (...	30	2.7
29	K0355_HUMAN (O15063) Protein KIAA0355	30	3.5
30	GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (P...	30	3.5
31	POLS_EEEV3 (P27284) Structural polyprotein (p130) [Contains: Cap...	30	4.5
32	KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as...	30	4.5
33	GPH_PSESS (P42510) Probable phosphoglycolate phosphatase (EC 3.1...	30	4.5
34	OTU6B_XENTR (Q5M8L0) OTU domain-containing protein 6B	29	5.9
35	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	29	5.9
36	RNR_VIBPA (P40611) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB p...	29	5.9
37	K0494_HUMAN (O75071) Protein KIAA0494	29	5.9
38	MAM_DROME (P21519) Neurogenic protein mastermind	29	5.9
39	KR413_HUMAN (Q9BYU7) Keratin-associated protein 4-13 (Keratin-as...	29	5.9
40	MBA2_ECOLI (P07112) Mobilization protein A	29	5.9
41	GMHB_CHLTE (Q8KAY7) D,D-heptose 1,7-bisphosphate phosphatase (EC...	29	7.7
42	OTU6B_XENLA (Q6GM06) OTU domain-containing protein 6B	29	7.7
43	CP6G2_DROME (Q9V675) Probable cytochrome P450 6g2 (EC 1.14.-.-) ...	29	7.7
44	P1254_THEMA (Q9X0Y1) Phosphorylated carbohydrates phosphatase TM...	29	7.7
45	K2M2_SHEEP (P15241) Keratin, type II microfibrillar, component 7C	29	7.7
46	NIT4_NEUCR (P28349) Nitrogen assimilation transcription factor n...	29	7.7
47	NIRA_EMENI (P28348) Nitrogen assimilation transcription factor nirA	29	7.7
48	PRIO_CALJA (P40247) Major prion protein precursor (PrP) (PrP27-3...	29	7.7
49	PRIO_ATEPA (P51446) Major prion protein precursor (PrP) (PrP27-3...	29	7.7
50	CAT8_YEAST (P39113) Regulatory protein CAT8	29	7.7

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = -3

Query: 483 DLPRTPVL-CKPNVGAMEAALRIANVNPYK-AIFFDDSVRNIQAGKRIGLHTVL 328
           D  RT  L CKP+V A E A++ + +  Y+ A F DDS +NI+ G ++G+ T +
Sbjct: 192 DYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 245

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>PPAX_LISMO (Q8Y4G3) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 217

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTSHRVKGADH 292
           KP+   +E AL + N    +AI   D+  +I+AGK     T+  G +  +KG +H
Sbjct: 141 KPDPEGIEMALSLLNATKEEAIMIGDNYHDIEAGK--NAETLTAGVAWAIKGPEH 193

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>PPAX_LISMF (Q71WU6) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 217

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTSHRVKGADH 292
           KP+   +E AL + N    +AI   D+  +I+AGK     T+  G +  +KG +H
Sbjct: 141 KPDPEGIEMALSLLNATKEEAIMIGDNYHDIEAGK--NAETLTAGVAWAIKGPEH 193

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>PPAX_LISIN (Q928B2) Pyrophosphatase ppaX (EC 3.6.1.1)|
          Length = 217

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTSHRVKGADH 292
           KP+   +E AL + N    +AI   D+  +I+AGK     T+  G +  +KG +H
Sbjct: 141 KPDPEGIEMALSLLNATKEEAIMIGDNYHDIEAGK--NAETLTAGVAWAIKGPEH 193

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>YHCW_BACSU (P54607) Hypothetical protein yhcW|
          Length = 220

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTSHRVKGA------D 295
           KPN      A +   V+P + + F+DSV    A KR G+  V+V   ++V G       D
Sbjct: 141 KPNPELYLLAAKNLGVSPAECLAFEDSVNGSIAAKRAGMKCVIV--PNKVTGTLMFEDYD 198

Query: 294 HALESIHNIREAL 256
           H LES+  +  AL
Sbjct: 199 HRLESMAEMELAL 211

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>YIEH_ECOLI (P31467) Phosphatase yieH (EC 3.1.3.-)|
          Length = 221

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTSHRVKGADHALESI 277
           KP+   M  A +  NVN    I  DDSV   Q+G   G+           K   H   + 
Sbjct: 142 KPDPALMFHAAKAMNVNVENCILVDDSVAGAQSGIDAGMEVFYFCADPHNKPIVHPKVTT 201

Query: 276 HNIREALPELWE 241
                 LPELW+
Sbjct: 202 FTHLSQLPELWK 213

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>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -2

Query: 439 HGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPP----HGAGWHVTPGEGRGSRAGEH 278
           HG GA  +Q +  Q    ++Q+ Q   +Q   PP    H A  H  PG  R + A  H
Sbjct: 119 HGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAH 176

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>YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-)|
          Length = 199

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLV 325
           KP     +  L+    +P   +FFDD+  NI+   ++G+ ++LV
Sbjct: 141 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184

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>YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-)|
          Length = 199

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLV 325
           KP     +  L+    +P   +FFDD+  NI+   ++G+ ++LV
Sbjct: 141 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184

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>PGMB_BACSU (O06995) Putative beta-phosphoglucomutase (EC 5.4.2.6) (Beta-PGM)|
          Length = 226

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = -3

Query: 477 PRTPVLCKPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTSHRVKGA 298
           P T    KP+      A  + +V+P      +D+   I A K  G+  V VG    + GA
Sbjct: 138 PTTLAKGKPDPDIFLTAAAMLDVSPADCAAIEDAEAGISAIKSAGMFAVGVGQGQPMLGA 197

Query: 297 DHALESIHNIR-EALPELWEEAEKTEDV 217
           D  +    ++  E L E WE+    E +
Sbjct: 198 DLVVRQTSDLTLELLHEEWEQYRIRESI 225

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>GMHB_PASMU (Q9CK98) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)|
           (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase)
          Length = 184

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGL-HTVLVGTSHRV-----KGAD 295
           KP  G +  A++  N++P  +    D V ++ AGK   + +TVLV T   +     K A+
Sbjct: 107 KPKPGMLLQAIKELNIDPNTSFMVGDKVEDMLAGKGAKIKNTVLVKTGKPITEDGKKQAN 166

Query: 294 HALESIHNIREALPEL 247
           + LESI ++ + +  L
Sbjct: 167 YVLESIADLPKLIKGL 182

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>GPH1_PSEAE (Q9S586) Phosphoglycolate phosphatase 1 (EC 3.1.3.18) (PGPase 1)|
           (PGP 1)
          Length = 272

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
 Frame = -3

Query: 486 DDLPRTPVLCKPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLH--TVLVGTSH 313
           D LP+     KP+  A+   +++A + P  A+F  DS  ++ A K  G+    +  G +H
Sbjct: 151 DTLPQQ----KPDPAALLFVMKMAGIEPEDALFVGDSRNDVLAAKAAGVRCAALTYGYNH 206

Query: 312 RVKGADHA-LESIHNIREALPELWEEAE 232
               A+ A    I N+R+ LP   + AE
Sbjct: 207 GRPIAEEAPTLVIDNLRDLLPCADQAAE 234

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>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 512

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -2

Query: 448 RRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGWHVTPG--EGRGSRAGEHP 275
           R R G GA D   +P       R+RA  + R    P  GAGW   PG   G   R  E P
Sbjct: 148 RGRGGPGAADGLSDP-------RRRAPRTNRNPGGPRPGAGWTDGPGAPHGEAWRGSEQP 200

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>GMHB_ANETH (Q9AGY5) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)|
           (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase)
          Length = 179

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTSHR 310
           KPN G +  + +  N++  K+I   D   +IQAGKR G++  ++ ++++
Sbjct: 109 KPNPGMILKSQKEFNIDLSKSILVGDKESDIQAGKRAGVNVNIIFSNNK 157

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>CBBY_RHOSH (P95649) Protein cbbY|
          Length = 230

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVL---VGTSH-RVKGADHA 289
           KP+      ALR  +V P +A+  +DS+  ++A K  GL  ++     T H    GAD  
Sbjct: 151 KPSPDIYRLALRELDVPPERAVALEDSLNGLRAAKGAGLRCIVSPGFYTRHEEFAGADRL 210

Query: 288 LES 280
           L+S
Sbjct: 211 LDS 213

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>KR109_HUMAN (P60411) Keratin-associated protein 10-9 (Keratin-associated|
           protein 10.9) (High sulfur keratin-associated protein
           10.9) (Keratin-associated protein 18-9)
           (Keratin-associated protein 18.9)
          Length = 292

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 303 PSPGVTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 410
           P   VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 56  PCCQVTCEPSPCQSGCTSSCTPSCCQQSSCQPAYCTSS 93

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>KR10C_HUMAN (P60413) Keratin-associated protein 10-12 (Keratin-associated|
           protein 10.12) (High sulfur keratin-associated protein
           10.12) (Keratin-associated protein 18-12)
           (Keratin-associated protein 18.12)
          Length = 245

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 303 PSPGVTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 410
           P   VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 61  PCCRVTCEPSPCQSGCTSSCTPSCCQQSSCQPACCTSS 98

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>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 445 RRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGWHVTPGEGR-GSRAGEHP 275
           R+HGS +    R          Q    SG  +++  HG+G H + G GR GS +G  P
Sbjct: 727 RKHGSRSGQSSRS--------EQHGSSSGLSSSYGQHGSGSHQSSGHGRQGSGSGHSP 776

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>KR107_HUMAN (P60409) Keratin-associated protein 10-7 (Keratin-associated|
           protein 10.7) (High sulfur keratin-associated protein
           10.7) (Keratin-associated protein 18-7)
           (Keratin-associated protein 18.7)
          Length = 370

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 303 PSPGVTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 410
           P   VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 66  PCCRVTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASS 103

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>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated|
           protein 10.4) (High sulfur keratin-associated protein
           10.4) (Keratin-associated protein 18-4)
           (Keratin-associated protein 18.4)
          Length = 401

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 303 PSPGVTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 410
           P   VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 66  PCCPVTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASS 103

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>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated|
           protein 10.6) (High sulfur keratin-associated protein
           10.6) (Keratin-associated protein 18-6)
           (Keratin-associated protein 18.6)
          Length = 365

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 303 PSPGVTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 410
           P   VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 66  PCCPVTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASS 103

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>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -2

Query: 439 HGSGA--QDRQREPLQGDFLRRQRAQHSGRQANWPPH----GAGWHVTPGEGRGSRAGEH 278
           HG GA  Q  Q++  Q    ++Q+ Q   +Q   PPH     A  H  PG  R + A  H
Sbjct: 119 HGPGALQQQHQQQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAH 178

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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = -2

Query: 484 RPAQDPRPMQAQRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGWHVTPGE 305
           R A  PR  +A+    G   +D +R+P       R R   SG   + P  G G    PG 
Sbjct: 487 RSASSPRGARARSPSRGRHPEDAKRQP-------RGRPSSSGTPRDGPAGGTGGSGGPGG 539

Query: 304 GRGSR 290
             GSR
Sbjct: 540 SLGSR 544

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>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated|
           protein 10.5) (High sulfur keratin-associated protein
           10.5) (Keratin-associated protein 18-5)
           (Keratin-associated protein 18.5)
          Length = 271

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 303 PSPGVTCQPAPC--GGQFACLPECCARCRRRKSPCK 404
           P     C+P+PC  G   +C P CC       SPC+
Sbjct: 50  PCCQAACEPSPCQSGCTSSCTPSCCQPACCASSPCQ 85

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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = -2

Query: 484 RPAQDPRPMQAQRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGWHVTPGE 305
           R A  PR  +A+    G   +D +R+P       R R   SG     P  G G    PG 
Sbjct: 487 RSASSPRGARARSPSRGRHPEDAKRQP-------RGRPSSSGTPREGPAGGTGGSGGPGG 539

Query: 304 GRGSR 290
             GSR
Sbjct: 540 SLGSR 544

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>MAML3_HUMAN (Q96JK9) Mastermind-like protein 3 (Mam-3)|
          Length = 1133

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -2

Query: 481 PAQDPRPMQAQRRRHGS-----GAQDRQREPLQGDFLRRQRAQHSGRQANWPPHG 332
           PA+  + M AQ+++          Q +Q++  Q    ++Q+ QHS + +NW P G
Sbjct: 464 PAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQTSNWSPLG 518

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>RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)|
          Length = 684

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -2

Query: 439 HGSGAQDRQREPLQGDFLRRQRAQHSGR--QANWPPHGAGWHVTPGEGRGSRAGEHP 275
           HG GA D  R P     LRR  +  + R   A+ P       V PG   GSRA   P
Sbjct: 252 HGGGAGDTSRSPGGEQGLRRANSVQASRPAPASMPSPAPPQPVQPGPPGGSRAAPGP 308

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>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -2

Query: 439 HGSGA--QDRQREPLQGDFLRRQRAQHSGRQANWPPH----GAGWHVTPGEGRGSRAGEH 278
           HG GA  Q  Q++  Q    ++Q+ Q   +Q   PPH     A  H  PG  R + A  H
Sbjct: 119 HGPGALQQQHQQQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANNHPGPGAWRSAAAAAH 178

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>K0355_HUMAN (O15063) Protein KIAA0355|
          Length = 1070

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -2

Query: 451  QRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGWHVTP 311
            QRR+H SG QD    P        +      +   WPP     H +P
Sbjct: 940  QRRKHSSGEQDTSTLPSPPLLTTVEDVNQDNKTKTWPPKAPWQHPSP 986

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>GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 213

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVL 328
           KP+   +   L I    P KA+   D+  +I+AGKR G  T L
Sbjct: 137 KPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 179

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>POLS_EEEV3 (P27284) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1240

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -2

Query: 487 RRPAQDPRPMQAQRRRHGSGAQDRQREPLQGDFLRRQR 374
           ++PA  P+P QA+++R    A+ ++R+P  G   +RQR
Sbjct: 68  KKPAPKPKPAQAKKKRPPPPAKKQKRKPKPG---KRQR 102

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>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 315 VTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 410
           V+C+P+PC  G   +C P CC +   + + C  S
Sbjct: 79  VSCEPSPCQSGCTDSCTPSCCQQSSCQPACCTSS 112

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>GPH_PSESS (P42510) Probable phosphoglycolate phosphatase (EC 3.1.3.18)|
           (PGPase) (PGP) (Fragment)
          Length = 160

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLV--GTSH-RVKGADHAL 286
           KP+  A+   +++A V   +A+F  DS  ++QA K  G+  V +  G +H R    ++  
Sbjct: 45  KPDPAALFFVMKMAGVPASQALFVGDSRSDVQAAKAAGVACVALSYGYNHGRPIAEENPA 104

Query: 285 ESIHNIREALP 253
             I ++R+ +P
Sbjct: 105 MVIDDLRKLIP 115

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>OTU6B_XENTR (Q5M8L0) OTU domain-containing protein 6B|
          Length = 294

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 481 PAQDPRPMQAQRRRHGSGAQDRQRE 407
           P Q PR  +AQ+RR    AQ+++R+
Sbjct: 95  PVQQPRQSKAQKRREKKAAQEKERD 119

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>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 472 DPRPMQAQRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGWHVTPGEGRGS 293
           D R    +RRRH S ++DR RE  +     R   +      + PP G   H+TP + +  
Sbjct: 4   DDRERDRERRRHRSRSRDRHRERSRDRRHHRNSRRKPSLYWDVPPPGFE-HITPMQYKAM 62

Query: 292 RA 287
           +A
Sbjct: 63  QA 64

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>RNR_VIBPA (P40611) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein|
           homolog)
          Length = 835

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
 Frame = +1

Query: 286 QRVIRALHPV*RANQHRVEANSLACLNVAHAVV----EENRLVRVHVGDPERRFHG---- 441
           +R I ++ PV R + H++    +   N+A A +    +E  L R+H    E R  G    
Sbjct: 448 ERKIESIEPVIRNDAHKIIEECMILANIASASLVEKAKEPALYRIHESPGELRLQGFRDF 507

Query: 442 -ADVGLA*DGG 471
            +++GL   GG
Sbjct: 508 LSELGLELKGG 518

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>K0494_HUMAN (O75071) Protein KIAA0494|
          Length = 495

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 360 AGKRIGLHTVLVGTSHRVKGADHALESIHNIREALPELWEEAEKTEDVLYAD 205
           A   I L T + G    V    + L S+H   EAL +  +E +KT ++L +D
Sbjct: 178 AADLISLPTTVEGLQKSVASIGNTLNSVHLAVEALQKTVDEHKKTMELLQSD 229

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>MAM_DROME (P21519) Neurogenic protein mastermind|
          Length = 1594

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 475 QDPRPMQAQRRRHGSGAQDRQRE--PLQGDFLRRQRAQHSGRQANWPPHGAGWHVTPGEG 302
           Q  + +Q Q+++H + AQ +Q +    Q    ++Q+ QHS   AN    G    +T G G
Sbjct: 47  QQQQQLQLQQQQHNAQAQQQQIQVQQQQQQQQQQQQQQHSPYNANLGATGGIAGITGGNG 106

Query: 301 RG 296
            G
Sbjct: 107 AG 108

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>KR413_HUMAN (Q9BYU7) Keratin-associated protein 4-13 (Keratin-associated|
           protein 4.13) (Ultrahigh sulfur keratin-associated
           protein 4.13)
          Length = 106

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +3

Query: 297 PRPSPGVTCQPAPCGGQFA----CLPECCARCRRRKSPCKGS 410
           P+    V CQP  C   +     C P+CC   R R + C+ S
Sbjct: 48  PQCCQSVCCQPTCCCPSYCVSSCCRPQCCQTTRCRTTCCRPS 89

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>MBA2_ECOLI (P07112) Mobilization protein A|
          Length = 708

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = -2

Query: 457 QAQRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGWHVTPGEGRGSRAG 284
           + QR +  SGA DR   P  GD  RR  A H    A     G G   +P   RG   G
Sbjct: 257 EIQRHQRVSGA-DRTAGPEHGDTGRRSPAGHEPDPAGQRGAGGGVAESPAPDRGGMGG 313

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>GMHB_CHLTE (Q8KAY7) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)|
           (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase)
          Length = 199

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 396 AIFFDDSVRNIQAGKRIGLHTVLVGTSH 313
           + F  D + +++ G+R GL T+LV T H
Sbjct: 136 SFFIGDKLIDVECGQRAGLKTILVRTGH 163

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>OTU6B_XENLA (Q6GM06) OTU domain-containing protein 6B|
          Length = 294

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 481 PAQDPRPMQAQRRRHGSGAQDRQRE 407
           P Q PR  +AQ+RR    AQ+++R+
Sbjct: 95  PVQQPRVSKAQKRREKKAAQEKERD 119

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>CP6G2_DROME (Q9V675) Probable cytochrome P450 6g2 (EC 1.14.-.-) (CYPVIG2)|
          Length = 519

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 38  FFPANAEFHVMITSSPAGSGTPGRIGLRLGY 130
           F P N + H   T  P G G  G IG R GY
Sbjct: 437 FSPENRKLHTPYTYMPFGLGPHGCIGERFGY 467

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>P1254_THEMA (Q9X0Y1) Phosphorylated carbohydrates phosphatase TM1254 (EC|
           3.1.3.-)
          Length = 216

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 456 KPNVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTSHRVKGADHALES 280
           KP+       L   NV P K + F+DS   ++A K  G+  +  G  H +      LE+
Sbjct: 140 KPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERI-YGVVHSLNDGKALLEA 197

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>K2M2_SHEEP (P15241) Keratin, type II microfibrillar, component 7C|
          Length = 491

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 300 RPSPGVTCQPAPCGGQFACLPECCARCRRRKSPCKG 407
           RP  G  C  APC G  A     CA C +  + C G
Sbjct: 449 RPVTGSVCS-APCSGNLAVSTGLCAPCGQLNTTCGG 483

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>NIT4_NEUCR (P28349) Nitrogen assimilation transcription factor nit-4|
          Length = 1090

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 333 PCGGQFACLPECCARCRRRKSPCKGS 410
           P   +  C+   C  CRRRKS C G+
Sbjct: 41  PTNQKRRCVSTACIACRRRKSKCDGA 66

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>NIRA_EMENI (P28348) Nitrogen assimilation transcription factor nirA|
          Length = 892

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 312 GVTCQPAPCGGQFACLPECCARCRRRKSPCKGS 410
           G +   AP   +  C+   C  CRRRKS C G+
Sbjct: 24  GTSTDNAPASKR-RCVSTACIACRRRKSKCDGN 55

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>PRIO_CALJA (P40247) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)|
           (CD230 antigen)
          Length = 252

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
 Frame = -2

Query: 445 RRHGSGAQDRQREPLQGDFLRRQRAQHSGRQ--ANW-PPHGAGWHVTPGEGRGSRAGEHP 275
           R  G G+    R P QG    +      G+     W  PHG GW    G G G   G H 
Sbjct: 37  RYPGQGSPGGNRYPPQGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHS 96

Query: 274 Q 272
           Q
Sbjct: 97  Q 97

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>PRIO_ATEPA (P51446) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)|
           (CD230 antigen)
          Length = 252

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
 Frame = -2

Query: 445 RRHGSGAQDRQREPLQGDFLRRQRAQHSGRQ--ANW-PPHGAGWHVTPGEGRGSRAGEHP 275
           R  G G+    R P QG    +      G+     W  PHG GW    G G G   G H 
Sbjct: 37  RYPGQGSPGGNRYPPQGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQAGGTHN 96

Query: 274 Q 272
           Q
Sbjct: 97  Q 97

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>CAT8_YEAST (P39113) Regulatory protein CAT8|
          Length = 1433

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 318 TCQPAPCGGQFACLPECCARCRRRKSPCKGSR 413
           T  P P       + + C RCR +K+ C G R
Sbjct: 53  TASPTPLSTPIYRIAQACDRCRSKKTRCDGKR 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,293,677
Number of Sequences: 219361
Number of extensions: 1297719
Number of successful extensions: 5840
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 5218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5746
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result