>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)|
          Length = 1430

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 320  PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSXQCVH*SPILQGSP 475
            P    P P  + PL   PL + S    +KPP SP  +  Q V     +QGSP
Sbjct: 1196 PPPAEPPPTDLMPLPPLPLPDGSARKPVKPPVSPKPILAQPV---SKIQGSP 1244

>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 21/52 (40%), Positives = 22/52 (42%)
 Frame = +2

Query: 320  PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSXQCVH*SPILQGSP 475
            P    P P  +A L   P  E       KPP SP  V  Q V   P LQGSP
Sbjct: 1195 PPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPV---PKLQGSP 1243

>PTPRZ_RAT (Q62656) Receptor-type tyrosine-protein phosphatase zeta precursor|
            (EC 3.1.3.48) (R-PTP-zeta) (Phosphacan) (3F8 chondroitin
            sulfate proteoglycan) (3H1 keratan sulfate proteoglycan)
          Length = 2316

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 332  MPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSXQCVH*S--PILQGSPA 478
            +PS P+   LTETP+ E S   +  P  S S+ S   +H +  P+L  SP+
Sbjct: 1207 LPSGPRDPVLTETPMVEQSSSSVSLPLASESASSKSTLHFTSVPVLNMSPS 1257

>POLG_YEFV2 (P19901) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3411

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 438  CXETEDGLRGGFRSIGLEASRRGVSV 361
            C   EDG+ G F+S  L AS+RGV V
Sbjct: 1501 CEHLEDGIYGIFQSTFLGASQRGVGV 1526

>POLG_YEFV1 (P03314) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3411

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 438  CXETEDGLRGGFRSIGLEASRRGVSV 361
            C   EDG+ G F+S  L AS+RGV V
Sbjct: 1501 CEHLEDGIYGIFQSTFLGASQRGVGV 1526

>LAT_HUMAN (O43561) Linker for activation of T-cells family member 1 (36 kDa|
           phospho-tyrosine adapter protein) (pp36) (p36-38)
          Length = 262

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 314 RRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSP 421
           +RP    P PP   P+T  P    S+P LL  PRSP
Sbjct: 52  KRPHTVAPWPPAYPPVTSYP--PLSQPDLLPIPRSP 85

>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = +2

Query: 314 RRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSXQCVH*SPILQGSPA 478
           R P R    P  + P   TP R  SRP   +P R PS          P   GSPA
Sbjct: 561 RPPSRYQSGPNSLPPRAATPTRPPSRPP-SRPSRPPS---------HPSAHGSPA 605

>NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-related protein|
           EAR-1) (Rev-erbA-alpha)
          Length = 614

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 320 PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPS 424
           PG   PSPP  AP+    +  +  P  L PPRSPS
Sbjct: 247 PGPMGPSPPP-APVPSPLVGFSQFPQQLTPPRSPS 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,205,489
Number of Sequences: 219361
Number of extensions: 1112030
Number of successful extensions: 2960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2955
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)