ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23l01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
2gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 geno... 101 3e-18
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
5ref|NM_197897.1| Oryza sativa (japonica cultivar-group) putative... 86 2e-13
6ref|XM_517982.1| PREDICTED: Pan troglodytes similar to protocadh... 46 0.16
7gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL... 46 0.16
8ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA... 46 0.16
9ref|NM_031501.1| Homo sapiens protocadherin alpha 5 (PCDHA5), tr... 46 0.16
10ref|NM_018908.2| Homo sapiens protocadherin alpha 5 (PCDHA5), tr... 46 0.16
11gb|BC033735.1| Homo sapiens protocadherin alpha 5, mRNA (cDNA cl... 46 0.16
12emb|CR860451.1| Pongo pygmaeus mRNA; cDNA DKFZp459H021 (from clo... 46 0.16
13dbj|AB176649.1| Macaca fuscata CNRv05 mRNA for Protocadherin alp... 46 0.16
14gb|AC008468.6|AC008468 Homo sapiens chromosome 5 clone CTC-365B8... 46 0.16
15gb|AF152313.1|AF152313 Homo sapiens protocadherin alpha 5 (PCDH-... 46 0.16
16gb|AF152483.1|AF152483 Homo sapiens protocadherin alpha 5 short ... 46 0.16
17emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chr... 44 0.62
18gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 42 2.5
19gb|AC132249.3| Mus musculus BAC clone RP24-434O21 from chromosom... 42 2.5
20gb|AC093714.2| Homo sapiens BAC clone RP11-458K10 from 7, comple... 42 2.5
21emb|AL109923.29|HSDJ468O1 Human DNA sequence from clone RP3-468O... 42 2.5
22emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G... 42 2.5
23gb|AC009345.7|AC009345 Drosophila melanogaster, chromosome 3R, r... 42 2.5
24gb|AC154024.2| Mus musculus 6 BAC RP24-137K15 (Roswell Park Canc... 42 2.5
25gb|AE003764.3| Drosophila melanogaster chromosome 3R, section 10... 42 2.5
26gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 42 2.5
27gb|BC039665.1| Homo sapiens, clone IMAGE:5163213, mRNA 42 2.5
28gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 9.7
29emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chr... 40 9.7
30emb|Z49966.1|CEF35C11 Caenorhabditis elegans Cosmid F35C11, comp... 40 9.7
31gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, compl... 40 9.7
32emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in l... 40 9.7
33emb|AL513302.15| Human DNA sequence from clone RP11-226L15 on ch... 40 9.7
34emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chr... 40 9.7
35emb|AL353899.22| Human DNA sequence from clone RP11-217A12 on ch... 40 9.7
36emb|BX649442.7| Zebrafish DNA sequence from clone DKEY-265J8 in ... 40 9.7
37gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 40 9.7
38emb|BX530033.6| Zebrafish DNA sequence from clone CH211-209F14 i... 40 9.7
39gb|BC034036.1| Homo sapiens potassium inwardly-rectifying channe... 40 9.7
40emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 i... 40 9.7
41gb|AC006201.4| Arabidopsis thaliana chromosome 2 clone T27K22 ma... 40 9.7
42gb|AF482710.1|AF482709S2 Homo sapiens potassium inwardly-rectify... 40 9.7
43gb|AC083829.5| Homo sapiens BAC clone RP11-466G12 from 4, comple... 40 9.7
44gb|AC090284.6| Homo sapiens chromosome 11, clone RP11-348B14, co... 40 9.7
45ref|NM_063338.2| Caenorhabditis elegans F35C11.5 (F35C11.5) mRNA... 40 9.7
46gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome... 40 9.7
47emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 ... 40 9.7
48ref|NM_002241.3| Homo sapiens potassium inwardly-rectifying chan... 40 9.7
49dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:C... 40 9.7
50gb|U73192.1|HSU73192 Human inward rectifier potassium channel Ki... 40 9.7
51emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in ... 40 9.7
52emb|AL954191.5| Zebrafish DNA sequence from clone CH211-230G14, ... 40 9.7
53dbj|AP005122.2| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 9.7 
>dbj|AK065123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P02, full
            insert sequence
          Length = 2018

 Score =  109 bits (55), Expect = 1e-20
 Identities = 118/139 (84%)
 Strand = Plus / Minus

                                                                        
Query: 485  ctgagaaagcttagtttcaccgccatggttgcgagagtgagatggcagggttcgacgaaa 544
            ||||||||||  ||||||| ||||||||||| |||||||||||||||  || ||| ||| 
Sbjct: 1439 ctgagaaagcggagtttcatcgccatggttgtgagagtgagatggcactgtccgatgaat 1380

                                                                        
Query: 545  ctgctccacggtctctaaagatagcagacttgaggacattatattgatcaacaactgaac 604
            ||||||| ||  ||||||||||||||||||||||  ||||||| |||||||| |||||  
Sbjct: 1379 ctgctcctcgacctctaaagatagcagacttgagcgcattatactgatcaacgactgagt 1320

                               
Query: 605  tgtacagagcctctgagaa 623
            ||||||  | |||||||||
Sbjct: 1319 tgtacaatgactctgagaa 1301



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 673  tactttatttcttcagctactgacaagcctacaccatgg 711
            |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1251 tactttatctcttcagttactgacaagcctacaccatgg 1213



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 442  agcagttcatctgctctgtcgaaaagaaatga 473
            ||||||||||||||| ||||||||||||||||
Sbjct: 1506 agcagttcatctgctgtgtcgaaaagaaatga 1475
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>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
             sequence
          Length = 64582

 Score =  101 bits (51), Expect = 3e-18
 Identities = 117/139 (84%)
 Strand = Plus / Minus

                                                                         
Query: 485   ctgagaaagcttagtttcaccgccatggttgcgagagtgagatggcagggttcgacgaaa 544
             ||||||||||  ||||||| ||||||||||| |||||||||||||||  || ||| ||| 
Sbjct: 44617 ctgagaaagcggagtttcatcgccatggttgtgagagtgagatggcactgtccgatgaat 44558

                                                                         
Query: 545   ctgctccacggtctctaaagatagcagacttgaggacattatattgatcaacaactgaac 604
             ||||||| ||  |||||||||||||||| |||||  ||||||| |||||||| |||||  
Sbjct: 44557 ctgctcctcgacctctaaagatagcagatttgagcgcattatactgatcaacgactgagt 44498

                                
Query: 605   tgtacagagcctctgagaa 623
             ||||||  | |||||||||
Sbjct: 44497 tgtacaatgactctgagaa 44479



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 673   tactttatttcttcagctactgacaagcctacaccatgg 711
             |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 43663 tactttatctcttcagttactgacaagcctacaccatgg 43625



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 442   agcagttcatctgctctgtcgaaaagaaatga 473
             ||||||||||||||| ||||||||||||||||
Sbjct: 45430 agcagttcatctgctgtgtcgaaaagaaatga 45399
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  101 bits (51), Expect = 3e-18
 Identities = 117/139 (84%)
 Strand = Plus / Minus

                                                                            
Query: 485      ctgagaaagcttagtttcaccgccatggttgcgagagtgagatggcagggttcgacgaaa 544
                ||||||||||  ||||||| ||||||||||| |||||||||||||||  || ||| ||| 
Sbjct: 22528899 ctgagaaagcggagtttcatcgccatggttgtgagagtgagatggcactgtccgatgaat 22528840

                                                                            
Query: 545      ctgctccacggtctctaaagatagcagacttgaggacattatattgatcaacaactgaac 604
                ||||||| ||  |||||||||||||||| |||||  ||||||| |||||||| |||||  
Sbjct: 22528839 ctgctcctcgacctctaaagatagcagatttgagcgcattatactgatcaacgactgagt 22528780

                                   
Query: 605      tgtacagagcctctgagaa 623
                ||||||  | |||||||||
Sbjct: 22528779 tgtacaatgactctgagaa 22528761



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 673      tactttatttcttcagctactgacaagcctacaccatgg 711
                |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 22527945 tactttatctcttcagttactgacaagcctacaccatgg 22527907



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 442      agcagttcatctgctctgtcgaaaagaaatga 473
                ||||||||||||||| ||||||||||||||||
Sbjct: 22529712 agcagttcatctgctgtgtcgaaaagaaatga 22529681
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  101 bits (51), Expect = 3e-18
 Identities = 117/139 (84%)
 Strand = Plus / Minus

                                                                            
Query: 485      ctgagaaagcttagtttcaccgccatggttgcgagagtgagatggcagggttcgacgaaa 544
                ||||||||||  ||||||| ||||||||||| |||||||||||||||  || ||| ||| 
Sbjct: 22541367 ctgagaaagcggagtttcatcgccatggttgtgagagtgagatggcactgtccgatgaat 22541308

                                                                            
Query: 545      ctgctccacggtctctaaagatagcagacttgaggacattatattgatcaacaactgaac 604
                ||||||| ||  |||||||||||||||| |||||  ||||||| |||||||| |||||  
Sbjct: 22541307 ctgctcctcgacctctaaagatagcagatttgagcgcattatactgatcaacgactgagt 22541248

                                   
Query: 605      tgtacagagcctctgagaa 623
                ||||||  | |||||||||
Sbjct: 22541247 tgtacaatgactctgagaa 22541229



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 673      tactttatttcttcagctactgacaagcctacaccatgg 711
                |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 22540413 tactttatctcttcagttactgacaagcctacaccatgg 22540375



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 442      agcagttcatctgctctgtcgaaaagaaatga 473
                ||||||||||||||| ||||||||||||||||
Sbjct: 22542180 agcagttcatctgctgtgtcgaaaagaaatga 22542149
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>ref|NM_197897.1| Oryza sativa (japonica cultivar-group) putative acyltransferase
            (OSJNBa0035H01.8), mRNA
          Length = 1284

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  cgccatggttgcgagagtgagatggcagggttcgacgaaactgctccacggtctctaaag 564
            ||||||||||| |||||||||||||||  || ||| ||| ||||||| ||  ||||||||
Sbjct: 1280 cgccatggttgtgagagtgagatggcactgtccgatgaatctgctcctcgacctctaaag 1221

                                                                       
Query: 565  atagcagacttgaggacattatattgatcaacaactgaactgtacagagcctctgagaa 623
            |||||||| |||||  ||||||| |||||||| |||||  ||||||  | |||||||||
Sbjct: 1220 atagcagatttgagcgcattatactgatcaacgactgagttgtacaatgactctgagaa 1162



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 673  tactttatttcttcagctactgacaagcctacaccatgg 711
            |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1112 tactttatctcttcagttactgacaagcctacaccatgg 1074
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>ref|XM_517982.1| PREDICTED: Pan troglodytes similar to protocadherin alpha 7 isoform
           2 precursor; KIAA0345-like 7; ortholog to mouse CNR4
           (LOC462125), mRNA
          Length = 7283

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 587 attgatcaacaactgaactgtac 609
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668
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>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete
             sequence
          Length = 157970

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 587   attgatcaacaactgaactgtac 609
             |||||||||||||||||||||||
Sbjct: 69633 attgatcaacaactgaactgtac 69655
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>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5
          Length = 297736

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 587   attgatcaacaactgaactgtac 609
             |||||||||||||||||||||||
Sbjct: 88338 attgatcaacaactgaactgtac 88316
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>ref|NM_031501.1| Homo sapiens protocadherin alpha 5 (PCDHA5), transcript variant 2,
           mRNA
          Length = 2451

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 587 attgatcaacaactgaactgtac 609
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668
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>ref|NM_018908.2| Homo sapiens protocadherin alpha 5 (PCDHA5), transcript variant 1,
           mRNA
          Length = 5218

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 587 attgatcaacaactgaactgtac 609
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668
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>gb|BC033735.1| Homo sapiens protocadherin alpha 5, mRNA (cDNA clone MGC:44897
           IMAGE:5175471), complete cds
          Length = 4260

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 587 attgatcaacaactgaactgtac 609
           |||||||||||||||||||||||
Sbjct: 829 attgatcaacaactgaactgtac 807
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>emb|CR860451.1| Pongo pygmaeus mRNA; cDNA DKFZp459H021 (from clone DKFZp459H021)
          Length = 4627

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 587 attgatcaacaactgaactgtac 609
           |||||||||||||||||||||||
Sbjct: 843 attgatcaacaactgaactgtac 821
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>dbj|AB176649.1| Macaca fuscata CNRv05 mRNA for Protocadherin alpha, complete cds
          Length = 3120

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 587 attgatcaacaactgaactgtac 609
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668
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>gb|AC008468.6|AC008468 Homo sapiens chromosome 5 clone CTC-365B8, complete sequence
          Length = 117096

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 587   attgatcaacaactgaactgtac 609
             |||||||||||||||||||||||
Sbjct: 93663 attgatcaacaactgaactgtac 93685
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>gb|AF152313.1|AF152313 Homo sapiens protocadherin alpha 5 (PCDH-alpha5) mRNA, complete cds
          Length = 5218

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 587 attgatcaacaactgaactgtac 609
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668
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>gb|AF152483.1|AF152483 Homo sapiens protocadherin alpha 5 short form protein (PCDH-alpha5)
           variable region sequence, complete cds
          Length = 2451

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 587 attgatcaacaactgaactgtac 609
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668
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>emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 141628

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 208    acaaaagatgaacacatgcatc 229
              ||||||||||||||||||||||
Sbjct: 108072 acaaaagatgaacacatgcatc 108093
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 226     catcatctgctgctgggttcc 246
               |||||||||||||||||||||
Sbjct: 2205159 catcatctgctgctgggttcc 2205179
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>gb|AC132249.3| Mus musculus BAC clone RP24-434O21 from chromosome 6, complete sequence
          Length = 180332

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     tggagcaaaagaattaatatg 59
              |||||||||||||||||||||
Sbjct: 154796 tggagcaaaagaattaatatg 154776
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>gb|AC093714.2| Homo sapiens BAC clone RP11-458K10 from 7, complete sequence
          Length = 142751

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 39   tggagcaaaagaattaatatg 59
            |||||||||||||||||||||
Sbjct: 5899 tggagcaaaagaattaatatg 5879
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>emb|AL109923.29|HSDJ468O1 Human DNA sequence from clone RP3-468O1 on chromosome 20 Contains the
             3' end of the ITCH gene for itchy homolog E3 ubiquitin
             protein ligase (mouse), a ferredoxin 1 (FDX1) pseudogene,
             the 5' end of the DNCL2A gene for cytoplasmic dynein light
             polypeptide 2A, two novel genes and two CpG islands,
             complete sequence
          Length = 97832

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 456   tctgtcgaaaagaaatgagaaatccaggc 484
             |||||| ||||||||| ||||||||||||
Sbjct: 10516 tctgtctaaaagaaataagaaatccaggc 10544
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>emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13
             Contains the C20orf96 gene, the C20orf99 gene, a novel
             gene, the SOX12 gene for SRY (sex-determining region
             Y)-box 12, the C20orf98 gene for chromosome 20 open
             reading frame 98 (similar to mouse VMP, FLJ23329), the
             C20orf97 gene for a novel kinase domain-containing protein
             similar to phosphoprotein C8FW and rat NIPK, the gene for
             a novel defensin protein (DEFB32, UNQ827, KFLL827) and
             five CpG islands, complete sequence
          Length = 153170

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 567   agcagacttgaggacattatattga 591
             |||||||||||||||| ||||||||
Sbjct: 94384 agcagacttgaggacaatatattga 94360
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>gb|AC009345.7|AC009345 Drosophila melanogaster, chromosome 3R, region 98C-98C, BAC clone
             BACR28F20, complete sequence
          Length = 158895

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   gcaaaaaaccacaacgttgca 437
             |||||||||||||||||||||
Sbjct: 69929 gcaaaaaaccacaacgttgca 69949
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>gb|AC154024.2| Mus musculus 6 BAC RP24-137K15 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 173257

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    tggagcaaaagaattaatatg 59
             |||||||||||||||||||||
Sbjct: 21285 tggagcaaaagaattaatatg 21265
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>gb|AE003764.3| Drosophila melanogaster chromosome 3R, section 102 of 118 of the complete
              sequence
          Length = 231455

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 417    gcaaaaaaccacaacgttgca 437
              |||||||||||||||||||||
Sbjct: 180218 gcaaaaaaccacaacgttgca 180238
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 226    catcatctgctgctgggttcc 246
              |||||||||||||||||||||
Sbjct: 410025 catcatctgctgctgggttcc 410045
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>gb|BC039665.1| Homo sapiens, clone IMAGE:5163213, mRNA
          Length = 1287

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 39  tggagcaaaagaattaatatg 59
           |||||||||||||||||||||
Sbjct: 612 tggagcaaaagaattaatatg 632
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     tgcatcatctgctgctgggt 243
               ||||||||||||||||||||
Sbjct: 2207041 tgcatcatctgctgctgggt 2207022
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>emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chromosome 17, complete
              sequence
          Length = 207434

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     aaaagaaatatcagcatttt 114
              ||||||||||||||||||||
Sbjct: 186801 aaaagaaatatcagcatttt 186820
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>emb|Z49966.1|CEF35C11 Caenorhabditis elegans Cosmid F35C11, complete sequence
          Length = 25450

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   acatgcatcatctgctgctg 240
             ||||||||||||||||||||
Sbjct: 18456 acatgcatcatctgctgctg 18437
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>gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, complete sequence
          Length = 194020

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     gaattaatatgtacacaaaa 68
              ||||||||||||||||||||
Sbjct: 152171 gaattaatatgtacacaaaa 152152
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>emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in linkage group 14,
             complete sequence
          Length = 139631

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    aaaaagaaatatcagcattt 113
             ||||||||||||||||||||
Sbjct: 21926 aaaaagaaatatcagcattt 21907
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>emb|AL513302.15| Human DNA sequence from clone RP11-226L15 on chromosome 1 Contains a
             ribosomal protein L27a (RPL27A) pseudogene, the PIGM gene
             for class M phosphatidylinositol glycan, the 3' end of the
             KCNJ10 gene for potassium inwardly-rectifying channel
             subfamily J member 10 and a CpG island, complete sequence
          Length = 56937

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 604   ctgtacagagcctctgagaa 623
             ||||||||||||||||||||
Sbjct: 49976 ctgtacagagcctctgagaa 49957
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>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains
            the RPL21P2 gene for ribosomal protein L21 pseudogene 2
            and a novel gene, complete sequence
          Length = 72540

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 468  aaatgagaaatccaggcctg 487
            ||||||||||||||||||||
Sbjct: 8428 aaatgagaaatccaggcctg 8409
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>emb|AL353899.22| Human DNA sequence from clone RP11-217A12 on chromosome 1 Contains the
             3' end of the gene for immunoglobulin superfamily receptor
             translocation associated 2 (IRTA2), complete sequence
          Length = 135733

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   cccagatgatagccatctga 190
             ||||||||||||||||||||
Sbjct: 61253 cccagatgatagccatctga 61234
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>emb|BX649442.7| Zebrafish DNA sequence from clone DKEY-265J8 in linkage group 9,
             complete sequence
          Length = 176456

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    cacaaaaagaaatatcagcatttt 114
             |||||||| |||||||||||||||
Sbjct: 79854 cacaaaaataaatatcagcatttt 79877
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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 88      gagcacaaaaagaaatatca 107
               ||||||||||||||||||||
Sbjct: 1681211 gagcacaaaaagaaatatca 1681192
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>emb|BX530033.6| Zebrafish DNA sequence from clone CH211-209F14 in linkage group 9,
              complete sequence
          Length = 221265

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 91     cacaaaaagaaatatcagcatttt 114
              |||||||| |||||||||||||||
Sbjct: 136287 cacaaaaataaatatcagcatttt 136264
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>gb|BC034036.1| Homo sapiens potassium inwardly-rectifying channel, subfamily J,
            member 10, mRNA (cDNA clone IMAGE:4811633), partial cds
          Length = 4424

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 604  ctgtacagagcctctgagaa 623
            ||||||||||||||||||||
Sbjct: 2409 ctgtacagagcctctgagaa 2428
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>emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 in linkage group 14,
             complete sequence
          Length = 128658

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    aaaaagaaatatcagcattt 113
             ||||||||||||||||||||
Sbjct: 95066 aaaaagaaatatcagcattt 95085
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>gb|AC006201.4| Arabidopsis thaliana chromosome 2 clone T27K22 map c245, complete
             sequence
          Length = 88149

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    aatatgtacacaaaactaat 73
             ||||||||||||||||||||
Sbjct: 59013 aatatgtacacaaaactaat 58994
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>gb|AF482710.1|AF482709S2 Homo sapiens potassium inwardly-rectifying channel (KCNJ10) gene,
            exon 2 and complete cds
          Length = 6024

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 604  ctgtacagagcctctgagaa 623
            ||||||||||||||||||||
Sbjct: 2358 ctgtacagagcctctgagaa 2377
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>gb|AC083829.5| Homo sapiens BAC clone RP11-466G12 from 4, complete sequence
          Length = 189402

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 620   agaagttcccccttgcctca 639
             ||||||||||||||||||||
Sbjct: 19521 agaagttcccccttgcctca 19540
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>gb|AC090284.6| Homo sapiens chromosome 11, clone RP11-348B14, complete sequence
          Length = 160146

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 676   tttatttcttcagctactga 695
             ||||||||||||||||||||
Sbjct: 55689 tttatttcttcagctactga 55708
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>ref|NM_063338.2| Caenorhabditis elegans F35C11.5 (F35C11.5) mRNA, complete cds
          Length = 1621

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 221 acatgcatcatctgctgctg 240
           ||||||||||||||||||||
Sbjct: 798 acatgcatcatctgctgctg 779
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>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence
          Length = 233829

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    gaattaatatgtacacaaaa 68
             ||||||||||||||||||||
Sbjct: 89591 gaattaatatgtacacaaaa 89610
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>emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 in linkage group 6,
             complete sequence
          Length = 186793

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aaaagaaatatcagcatttt 114
             ||||||||||||||||||||
Sbjct: 25592 aaaagaaatatcagcatttt 25573
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>ref|NM_002241.3| Homo sapiens potassium inwardly-rectifying channel, subfamily J,
            member 10 (KCNJ10), mRNA
          Length = 4440

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 604  ctgtacagagcctctgagaa 623
            ||||||||||||||||||||
Sbjct: 2417 ctgtacagagcctctgagaa 2436
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>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete
             sequence
          Length = 129610

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   aaatgagaaatccaggcctg 487
             ||||||||||||||||||||
Sbjct: 46657 aaatgagaaatccaggcctg 46638
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>gb|U73192.1|HSU73192 Human inward rectifier potassium channel Kir1.2 (Kir1.2) gene,
            complete cds
          Length = 2896

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 604  ctgtacagagcctctgagaa 623
            ||||||||||||||||||||
Sbjct: 2705 ctgtacagagcctctgagaa 2724
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>emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in linkage group 6, complete
              sequence
          Length = 222787

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     aaaagaaatatcagcatttt 114
              ||||||||||||||||||||
Sbjct: 109868 aaaagaaatatcagcatttt 109887
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>emb|AL954191.5| Zebrafish DNA sequence from clone CH211-230G14, complete sequence
          Length = 151595

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 462    gaaaagaaatgagaaatcca 481
              ||||||||||||||||||||
Sbjct: 133112 gaaaagaaatgagaaatcca 133093
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>dbj|AP005122.2| Homo sapiens genomic DNA, chromosome 11, clone:RP11-419F8, complete
             sequence
          Length = 170006

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 676   tttatttcttcagctactga 695
             ||||||||||||||||||||
Sbjct: 27675 tttatttcttcagctactga 27656


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,771,639
Number of Sequences: 3902068
Number of extensions: 6771639
Number of successful extensions: 127114
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126868
Number of HSP's gapped (non-prelim): 246
length of query: 711
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 688
effective length of database: 17,143,297,704
effective search space: 11794588820352
effective search space used: 11794588820352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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