ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal23k15 |
|---|---|
| Clone Library Name | barley_pub |
>NCKX6_RAT (Q6AXS0) Sodium/potassium/calcium exchanger 6 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 6) (Solute carrier family 24 member 6) Length = 585 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTM-SFLVAGLVWALVT 276 +A S C+ G +FN L G+G+ LL + + L D L++ + S L LV++LV+ Sbjct: 486 MAFSACFGGIIFNILVGVGLGCLLQIVRSHASEVKLEPDGLLVWVLASALGLSLVFSLVS 545 Query: 275 LPRSGMRPNKTLGVGLIALYSVFLFIRVSSAMGILPL 165 +P + +K G+ L+ Y F+ + + + G++ L Sbjct: 546 VPLQCFQLSKAYGLCLLLFYICFIVVVLLTEFGVIHL 582
>NCKX6_MOUSE (Q925Q3) Sodium/potassium/calcium exchanger 6 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 6) (Solute carrier family 24 member 6) Length = 585 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTM-SFLVAGLVWALVT 276 +A S C+ G +FN L G+G+ LL L D L++ + S L L+++LV+ Sbjct: 486 MAFSACFGGIIFNILVGVGLGCLLQIIRNHVVEVKLEPDGLLVWVLASALGLSLIFSLVS 545 Query: 275 LPRSGMRPNKTLGVGLIALYSVFLFIRVSSAMGILPL 165 +P + +K G+ L+ Y FL + + + G++ L Sbjct: 546 VPLQCFQLSKAYGLCLLLFYICFLVVVLLTEFGVIHL 582
>NCKX6_HUMAN (Q6J4K2) Sodium/potassium/calcium exchanger 6 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 6) (Solute carrier family 24 member 6) Length = 584 Score = 46.2 bits (108), Expect = 4e-05 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTMS-FLVAGLVWALVT 276 +A S C+ G +FN L G+G+ LL S + T L D L++ ++ L LV++LV+ Sbjct: 486 MAFSACFGGIIFNILVGVGLGCLLQI-SRSHTEVKLEPDGLLVWVLAGALGLSLVFSLVS 544 Query: 275 LPRSGMRPNKTLGVGLIALYSVFLFIRVSSAMGILPLPGL 156 +P + ++ G L+ Y FL + + + G++ L + Sbjct: 545 VPLQCFQLSRVYGFCLLLFYLNFLVVALLTEFGVIHLKSM 584
>NCKX3_HUMAN (Q9HC58) Sodium/potassium/calcium exchanger 3 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 3) (Solute carrier family 24 member 3) Length = 644 Score = 43.5 bits (101), Expect = 2e-04 Identities = 26/99 (26%), Positives = 46/99 (46%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTMSFLVAGLVWALVTL 273 +A+S +F+ L GLG+ L + SY+ R LIY++ L+A + + + Sbjct: 540 MAVSNSIGSNVFDILIGLGLPWALQTLAVDYGSYIRLNSRGLIYSVGLLLASVFVTVFGV 599 Query: 272 PRSGMRPNKTLGVGLIALYSVFLFIRVSSAMGILPLPGL 156 + + +K LG G + LY VFL + + + L Sbjct: 600 HLNKWQLDKKLGCGCLLLYGVFLCFSIMTEFNVFTFVNL 638
>NCKX3_RAT (Q9EPQ0) Sodium/potassium/calcium exchanger 3 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 3) (Fragment) Length = 624 Score = 43.1 bits (100), Expect = 3e-04 Identities = 26/99 (26%), Positives = 46/99 (46%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTMSFLVAGLVWALVTL 273 +A+S +F+ L GLG+ L + SY+ R LIY++ L+A + + + Sbjct: 521 MAVSNSIGSNVFDILIGLGLPWALQTLAVDYGSYIRLNSRGLIYSVGLLLASVFVTVFGV 580 Query: 272 PRSGMRPNKTLGVGLIALYSVFLFIRVSSAMGILPLPGL 156 + + +K LG G + LY VFL + + + L Sbjct: 581 HLNKWQLDKKLGCGCLFLYGVFLCFSIMTEFNVFTFVNL 619
>NCKX3_MOUSE (Q99PD7) Sodium/potassium/calcium exchanger 3 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 3) Length = 645 Score = 43.1 bits (100), Expect = 3e-04 Identities = 26/99 (26%), Positives = 46/99 (46%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTMSFLVAGLVWALVTL 273 +A+S +F+ L GLG+ L + SY+ R LIY++ L+A + + + Sbjct: 542 MAVSNSIGSNVFDILIGLGLPWALQTLAVDYGSYIRLNSRGLIYSVGLLLASVFVTVFGV 601 Query: 272 PRSGMRPNKTLGVGLIALYSVFLFIRVSSAMGILPLPGL 156 + + +K LG G + LY VFL + + + L Sbjct: 602 HLNKWQLDKKLGCGCLFLYGVFLCFSIMTEFNVFTFVNL 640
>NCX7_CAEEL (P34322) Putative sodium/calcium exchanger 7 precursor| (Na(+)/Ca(2+)-exchange protein 7) Length = 691 Score = 38.5 bits (88), Expect = 0.008 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVL-PQDRSLIYTMSFLVAGLVWALVT 276 +AM+ GP+FN L G G+ + S + P R LI FL L+ L+ Sbjct: 597 MAMAAAIGGPLFNLLMGFGLPFTIAKLQGKYISMTINPTYRLLIL---FLAISLLATLIG 653 Query: 275 LPRSGMRPNKTLGVGLIALYSVFLFIRVSSAMGIL 171 +P R + LI++Y F+ + S G+L Sbjct: 654 IPVQKFRLQRPHAAVLISIYIAFIVFVILSETGVL 688
>NCKX4_MOUSE (Q8CGQ8) Sodium/potassium/calcium exchanger 4 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 4) Length = 605 Score = 37.4 bits (85), Expect = 0.018 Identities = 23/83 (27%), Positives = 42/83 (50%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTMSFLVAGLVWALVTL 273 +A+S +F+ L GLGI L S V R L+Y++ L+ + ++ + Sbjct: 500 MAVSNTIGSNVFDILVGLGIPWGLQTMVINYGSTVKINSRGLVYSVVLLLGSVALTVLGI 559 Query: 272 PRSGMRPNKTLGVGLIALYSVFL 204 + R ++ LG+ ++ LY+VFL Sbjct: 560 HLNKWRLDRKLGIYVLVLYAVFL 582
>NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 4) (Solute carrier family 24 member 4) Length = 605 Score = 37.4 bits (85), Expect = 0.018 Identities = 22/83 (26%), Positives = 42/83 (50%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTMSFLVAGLVWALVTL 273 +A+S +F+ L GLG+ L S V R L+Y++ L+ + ++ + Sbjct: 500 MAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGSTVKINSRGLVYSVVLLLGSVALTVLGI 559 Query: 272 PRSGMRPNKTLGVGLIALYSVFL 204 + R ++ LGV ++ LY++FL Sbjct: 560 HLNKWRLDRKLGVYVLVLYAIFL 582
>NCKX1_CHICK (Q9IAL8) Sodium/potassium/calcium exchanger 1 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 663 Score = 32.7 bits (73), Expect = 0.44 Identities = 26/97 (26%), Positives = 42/97 (43%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTMSFLVAGLVWALVTL 273 +A+S +F+ GL + L + S V L + L L++ ++++ Sbjct: 565 MAVSSSVGSNIFDITVGLPVPWFLYSVFNG-FSPVAVSSNGLFCAIVLLFLMLLFVIISI 623 Query: 272 PRSGMRPNKTLGVGLIALYSVFLFIRVSSAMGILPLP 162 + NK LGV + ALY VFL I V I+ P Sbjct: 624 ALCKWKMNKILGVTMFALYFVFLIISVMLEDRIISCP 660
>BETP_CORGL (P54582) Glycine betaine transporter betP| Length = 595 Score = 30.8 bits (68), Expect = 1.7 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = -3 Query: 422 MFNTLAGLGISML-LGAWSTAPTSYVLPQDRSLIYTMSFLVAGLVWALVTLPRSGMRPNK 246 +F T LG+ L +GA +A P D +++ +S L +++ ++ G++ Sbjct: 247 VFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTLAFIFSAISGVGKGIQYLS 306 Query: 245 TLGVGLIALYSVFLFIRVSSAMGILP-LPG 159 + L AL ++F+F+ V + IL LPG Sbjct: 307 NANMVLAALLAIFVFV-VGPTVSILNLLPG 335
>NCX6_CAEEL (P34315) Putative sodium/calcium exchanger 6 precursor| (Na(+)/Ca(2+)-exchange protein 6) Length = 590 Score = 30.4 bits (67), Expect = 2.2 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Frame = -3 Query: 452 IAMSGCYAGPMFNTLAGLGISMLLGAWSTAPTSYVLPQDRSLIYTMSFLVAGLVWALVTL 273 +AM+ G +FN L G G+ + S ++ L+ M FL L++ L+ + Sbjct: 496 MAMAAAIGGQLFNLLIGFGLPFTIAKIQGKSISMIINPTYRLL--MLFLAISLIFTLIAM 553 Query: 272 PRSGMRPNKTLGVGLIALY-SVFLFIRVS 189 + L+ +Y S F+FI +S Sbjct: 554 FAQKYFLRRIHSYSLVFIYISFFVFIGLS 582
>MAL_MOUSE (O09198) Myelin and lymphocyte protein (T-lymphocyte| maturation-associated protein) Length = 153 Score = 30.4 bits (67), Expect = 2.2 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -3 Query: 371 STAPTSY-VLPQDRSLIYTMSFLVAGLVWALVTLPRSGMRPNKTLGVGLIALYSVFLFIR 195 ST P+ + V L++ F+ GLVW L+ S + P L G + SVF F+ Sbjct: 10 STLPSGFSVFTTFPDLLFVCEFVFGGLVWILIA---SSLVP-LPLAQGWVMFVSVFCFVA 65 Query: 194 VSSAM 180 +S M Sbjct: 66 TTSLM 70
>PHF3_HUMAN (Q92576) PHD finger protein 3| Length = 2039 Score = 29.6 bits (65), Expect = 3.7 Identities = 21/65 (32%), Positives = 31/65 (47%) Frame = +3 Query: 165 ERQYPHSTAYSNEKENRVKSDEANSECLVRPHAAPWQRDKRPDQPSNEEAHRVNKRAVLR 344 +RQ +S ++ ++E K E SE R +DK D+ S EE H+ +RA L Sbjct: 1919 DRQRFYSDSHHLKRERHEKEWEQESE---RHRRRDRSQDKDRDRKSREEGHKDKERARLS 1975 Query: 345 KNVRG 359 RG Sbjct: 1976 HGDRG 1980
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/60 (25%), Positives = 26/60 (43%) Frame = +3 Query: 165 ERQYPHSTAYSNEKENRVKSDEANSECLVRPHAAPWQRDKRPDQPSNEEAHRVNKRAVLR 344 E + T S + ++ + DE + + + W+R+ D PS+ E KR LR Sbjct: 1096 EHEVDVKTPASKPRPDQAREDELHPKQAEKREGRRWRREPTVDSPSHSEGKSNKKRGKLR 1155
>MAL_RAT (Q64349) Myelin and lymphocyte protein (T-lymphocyte| maturation-associated protein) (17 kDa myelin vesicular protein) (MVP17) (NS 3) Length = 153 Score = 29.3 bits (64), Expect = 4.8 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -3 Query: 371 STAPTSY-VLPQDRSLIYTMSFLVAGLVWALVTLPRSGMRPNKTLGVGLIALYSVFLFIR 195 ST P+ + V L++ F+ GLVW L+ S + P L G + SVF F+ Sbjct: 10 STLPSGFSVFVTFPDLLFIFEFIFGGLVWILIA---SSLVP-MPLVQGWVMFVSVFCFLA 65 Query: 194 VSSAM 180 +S M Sbjct: 66 TTSLM 70
>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 207 ENRVKSDEANSECLVRPHAAPWQRDKRPDQPSNEEAHRVNKR 332 E + + +EA + CL+ P +P K P+ N + R N+R Sbjct: 827 EKKQRLEEATTICLLPPCISPAPPHKPPNTRENNSSRRANRR 868
>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 207 ENRVKSDEANSECLVRPHAAPWQRDKRPDQPSNEEAHRVNKR 332 E + + +EA + CL+ P +P K P+ N + R N+R Sbjct: 827 EKKQRLEEATTICLLPPCISPAPPHKPPNTRENNSSRRANRR 868
>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2| protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E mental retardation syndrome protein) Length = 1311 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 207 ENRVKSDEANSECLVRPHAAPWQRDKRPDQPSNEEAHRVNKR 332 E + + +EA + CL+ P +P K P+ N + R N+R Sbjct: 866 EKKQRLEEATTICLLPPCISPAPPHKPPNTRENNSSRRANRR 907
>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)| Length = 2798 Score = 28.9 bits (63), Expect = 6.3 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = +3 Query: 156 QARERQYPHSTAYSNEKENRVKSDEANSECLVRPHAAPWQRDKRPDQPSNEEAHRVNKRA 335 Q+R R+ P + S+ ++ KSD + +E L R H D R D+PS E+ R + Sbjct: 835 QSRVRR-PETLRSSSRNDHSTKSDGSKTEKLERKHRHE-SGDSR-DRPSGEQKSRPDSPR 891 Query: 336 VLRKNV---RGGCRRPSSK 383 V + + R G + P+SK Sbjct: 892 VKQGDTNKSRPGFKSPNSK 910
>CD017_MACFA (Q4R616) Protein C4orf17 homolog| Length = 296 Score = 26.2 bits (56), Expect(2) = 8.4 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +3 Query: 123 QSCTIDTNQLIQARERQYPHSTAYSNEKENRVKSDEANSECLVRPHAAPWQRDKRPDQPS 302 QS ++ N++ A + YP STA + V +++ RPH+ P ++ + + S Sbjct: 69 QSNHLEKNRIPFA-QCSYPPSTAVQDSPVRGVSPAPNSAKVPPRPHSEPSRKIQECFKTS 127 Query: 303 NEEAHRVNKRAVLRKN 350 NE + K + K+ Sbjct: 128 NENPLVIKKEEIKAKS 143 Score = 20.8 bits (42), Expect(2) = 8.4 Identities = 9/25 (36%), Positives = 13/25 (52%) Frame = +2 Query: 74 AEQQQNRGTHFICINDTVMYNRHKP 148 A Q + +G+H + N T RH P Sbjct: 11 ALQIEGKGSHIMARNVTCFLVRHTP 35 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,257,879 Number of Sequences: 219361 Number of extensions: 1323372 Number of successful extensions: 3637 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3577 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3636 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
