ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal23k15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 278 bits (140), Expect = 2e-71 Identities = 266/308 (86%) Strand = Plus / Plus Query: 147 caactaattcaagcccgggagcggcaatatccccatagcactgcttactctaatgaaaag 206 ||||||| ||||||| || | |||||||||||||| ||| ||||||| ||||| ||||| Sbjct: 4176065 caactaactcaagccaggcaatggcaatatccccattgcattgcttaccctaataaaaag 4176124 Query: 207 gaaaaccgagtaaagagcgatgaggccaactccgagtgtcttgttaggccgcatgccgct 266 ||||| |||||||| || ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct: 4176125 aaaaactgagtaaagggcaatgagaccaactccaagtatcttgttaggctgcatgccacc 4176184 Query: 267 ccgtggcagcgtgacaagcgcccagaccaacccagcaacgaggaagctcatcgtgtaaat 326 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||||| Sbjct: 4176185 ccgtggcagcataacaagagcccagatcaatccaccaacgaggaagctcattgtgtaaat 4176244 Query: 327 aagagagcggtcctgcggaagaacgtacgaggtgggtgccgtcgaccaagctccaagcag 386 ||||||| ||| || |||||||| || ||| | ||||| || ||||||||||||||||| Sbjct: 4176245 gagagagctgtcttgaggaagaacataagagtttggtgctgttgaccaagctccaagcag 4176304 Query: 387 cattgatattcctaagccagcaagtgtattgaacataggtcctgcataacatccagacat 446 ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 4176305 catcgatattcccaatccagcaagtgtattgaacataggtcctgcgtagcatccagacat 4176364 Query: 447 agcgatct 454 ||||||| Sbjct: 4176365 ggcgatct 4176372
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 278 bits (140), Expect = 2e-71 Identities = 266/308 (86%) Strand = Plus / Plus Query: 147 caactaattcaagcccgggagcggcaatatccccatagcactgcttactctaatgaaaag 206 ||||||| ||||||| || | |||||||||||||| ||| ||||||| ||||| ||||| Sbjct: 4176174 caactaactcaagccaggcaatggcaatatccccattgcattgcttaccctaataaaaag 4176233 Query: 207 gaaaaccgagtaaagagcgatgaggccaactccgagtgtcttgttaggccgcatgccgct 266 ||||| |||||||| || ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct: 4176234 aaaaactgagtaaagggcaatgagaccaactccaagtatcttgttaggctgcatgccacc 4176293 Query: 267 ccgtggcagcgtgacaagcgcccagaccaacccagcaacgaggaagctcatcgtgtaaat 326 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||||| Sbjct: 4176294 ccgtggcagcataacaagagcccagatcaatccaccaacgaggaagctcattgtgtaaat 4176353 Query: 327 aagagagcggtcctgcggaagaacgtacgaggtgggtgccgtcgaccaagctccaagcag 386 ||||||| ||| || |||||||| || ||| | ||||| || ||||||||||||||||| Sbjct: 4176354 gagagagctgtcttgaggaagaacataagagtttggtgctgttgaccaagctccaagcag 4176413 Query: 387 cattgatattcctaagccagcaagtgtattgaacataggtcctgcataacatccagacat 446 ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 4176414 catcgatattcccaatccagcaagtgtattgaacataggtcctgcgtagcatccagacat 4176473 Query: 447 agcgatct 454 ||||||| Sbjct: 4176474 ggcgatct 4176481
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 278 bits (140), Expect = 2e-71 Identities = 266/308 (86%) Strand = Plus / Plus Query: 147 caactaattcaagcccgggagcggcaatatccccatagcactgcttactctaatgaaaag 206 ||||||| ||||||| || | |||||||||||||| ||| ||||||| ||||| ||||| Sbjct: 76702 caactaactcaagccaggcaatggcaatatccccattgcattgcttaccctaataaaaag 76761 Query: 207 gaaaaccgagtaaagagcgatgaggccaactccgagtgtcttgttaggccgcatgccgct 266 ||||| |||||||| || ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct: 76762 aaaaactgagtaaagggcaatgagaccaactccaagtatcttgttaggctgcatgccacc 76821 Query: 267 ccgtggcagcgtgacaagcgcccagaccaacccagcaacgaggaagctcatcgtgtaaat 326 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||||| Sbjct: 76822 ccgtggcagcataacaagagcccagatcaatccaccaacgaggaagctcattgtgtaaat 76881 Query: 327 aagagagcggtcctgcggaagaacgtacgaggtgggtgccgtcgaccaagctccaagcag 386 ||||||| ||| || |||||||| || ||| | ||||| || ||||||||||||||||| Sbjct: 76882 gagagagctgtcttgaggaagaacataagagtttggtgctgttgaccaagctccaagcag 76941 Query: 387 cattgatattcctaagccagcaagtgtattgaacataggtcctgcataacatccagacat 446 ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 76942 catcgatattcccaatccagcaagtgtattgaacataggtcctgcgtagcatccagacat 77001 Query: 447 agcgatct 454 ||||||| Sbjct: 77002 ggcgatct 77009
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 278 bits (140), Expect = 2e-71 Identities = 266/308 (86%) Strand = Plus / Plus Query: 147 caactaattcaagcccgggagcggcaatatccccatagcactgcttactctaatgaaaag 206 ||||||| ||||||| || | |||||||||||||| ||| ||||||| ||||| ||||| Sbjct: 4680 caactaactcaagccaggcaatggcaatatccccattgcattgcttaccctaataaaaag 4739 Query: 207 gaaaaccgagtaaagagcgatgaggccaactccgagtgtcttgttaggccgcatgccgct 266 ||||| |||||||| || ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct: 4740 aaaaactgagtaaagggcaatgagaccaactccaagtatcttgttaggctgcatgccacc 4799 Query: 267 ccgtggcagcgtgacaagcgcccagaccaacccagcaacgaggaagctcatcgtgtaaat 326 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||||| Sbjct: 4800 ccgtggcagcataacaagagcccagatcaatccaccaacgaggaagctcattgtgtaaat 4859 Query: 327 aagagagcggtcctgcggaagaacgtacgaggtgggtgccgtcgaccaagctccaagcag 386 ||||||| ||| || |||||||| || ||| | ||||| || ||||||||||||||||| Sbjct: 4860 gagagagctgtcttgaggaagaacataagagtttggtgctgttgaccaagctccaagcag 4919 Query: 387 cattgatattcctaagccagcaagtgtattgaacataggtcctgcataacatccagacat 446 ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 4920 catcgatattcccaatccagcaagtgtattgaacataggtcctgcgtagcatccagacat 4979 Query: 447 agcgatct 454 ||||||| Sbjct: 4980 ggcgatct 4987
>ref|XM_470536.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1920 Score = 274 bits (138), Expect = 2e-70 Identities = 249/286 (87%) Strand = Plus / Minus Query: 169 ggcaatatccccatagcactgcttactctaatgaaaaggaaaaccgagtaaagagcgatg 228 |||||||||||||| ||| ||||||| ||||| ||||| ||||| |||||||| || ||| Sbjct: 1901 ggcaatatccccattgcattgcttaccctaataaaaagaaaaactgagtaaagggcaatg 1842 Query: 229 aggccaactccgagtgtcttgttaggccgcatgccgctccgtggcagcgtgacaagcgcc 288 || |||||||| ||| ||||||||||| ||||||| | |||||||||| | ||||| ||| Sbjct: 1841 agaccaactccaagtatcttgttaggctgcatgccaccccgtggcagcataacaagagcc 1782 Query: 289 cagaccaacccagcaacgaggaagctcatcgtgtaaataagagagcggtcctgcggaaga 348 |||| ||| ||| |||||||||||||||| |||||||| ||||||| ||| || |||||| Sbjct: 1781 cagatcaatccaccaacgaggaagctcattgtgtaaatgagagagctgtcttgaggaaga 1722 Query: 349 acgtacgaggtgggtgccgtcgaccaagctccaagcagcattgatattcctaagccagca 408 || || ||| | ||||| || |||||||||||||||||||| |||||||| || |||||| Sbjct: 1721 acataagagtttggtgctgttgaccaagctccaagcagcatcgatattcccaatccagca 1662 Query: 409 agtgtattgaacataggtcctgcataacatccagacatagcgatct 454 ||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct: 1661 agtgtattgaacataggtcctgcgtagcatccagacatggcgatct 1616
>gb|AY112326.1| Zea mays CL40761_1 mRNA sequence Length = 1098 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 403 ccagcaagtgtattgaacataggtcctgcataacatccagacat 446 |||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct: 257 ccagcaagtgtattaaacataggtcccgcataacatccggacat 300 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 226 atgaggccaactccgagtgtcttgttaggc 255 |||||||||||||| ||| ||||||||||| Sbjct: 165 atgaggccaactccaagtatcttgttaggc 194
>ref|XM_876534.1| PREDICTED: Bos taurus similar to exportin 6, transcript variant 6 (LOC510797), mRNA Length = 2994 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 185 cactgcttactctaatgaaaaggaaa 210 ||||||||||||||| |||||||||| Sbjct: 2211 cactgcttactctaaggaaaaggaaa 2186
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 aacaacaacagaacagaggaa 98 ||||||||||||||||||||| Sbjct: 24329 aacaacaacagaacagaggaa 24349
>gb|AC121835.2| Mus musculus BAC clone RP24-72L18 from 8, complete sequence Length = 225065 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 agctaaatttgaggcagaac 80 |||||||||||||||||||| Sbjct: 146135 agctaaatttgaggcagaac 146154
>gb|AE012259.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 167 of 460 of the complete genome Length = 9926 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cgcccagaccaacccagcaa 304 |||||||||||||||||||| Sbjct: 1478 cgcccagaccaacccagcaa 1497
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 cgcccagaccaacccagcaa 304 |||||||||||||||||||| Sbjct: 3197405 cgcccagaccaacccagcaa 3197386
>gb|AC007391.3| Homo sapiens BAC clone RP11-429J10 from 2, complete sequence Length = 183991 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 aacagaggaactcatttcatttgt 112 |||||||| ||||||||||||||| Sbjct: 108741 aacagaggtactcatttcatttgt 108718 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,719,042 Number of Sequences: 3902068 Number of extensions: 3719042 Number of successful extensions: 67047 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66974 Number of HSP's gapped (non-prelim): 73 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
