ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DECR_RAT (Q64591) 2,4-dienoyl-CoA reductase, mitochondrial precu... 32 2.4
2ADO3_ARATH (Q9C9W9) Adagio protein 3 (Flavin-binding kelch repea... 31 3.1
3DECR_MOUSE (Q9CQ62) 2,4-dienoyl-CoA reductase, mitochondrial pre... 30 7.0
4CT032_HUMAN (Q9NQ75) HEF-like protein 30 9.1

>DECR_RAT (Q64591) 2,4-dienoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.34) (2,4-dienoyl-CoA reductase [NADPH])
           (4-enoyl-CoA reductase [NADPH])
          Length = 335

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = -3

Query: 478 FPDKMVPCA--SGFQSRIAF---GMIGLGDSICLFGGVIGPGPRNQCIKPLSDVDILNVT 314
           FP  + P    + FQ ++AF   G  GLG ++  F   +G     QC+    ++D+L  T
Sbjct: 44  FPPILKPMLPPNAFQGKVAFITGGGTGLGKAMTTFLSSLGA----QCVIASRNIDVLKAT 99

Query: 313 SERPTWRQGSPMTRCRGSV 257
           +E  T + G+ +   R  V
Sbjct: 100 AEEITSKTGNKVYAIRCDV 118



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>ADO3_ARATH (Q9C9W9) Adagio protein 3 (Flavin-binding kelch repeat F-box|
           protein 1) (F-box only protein 2a) (FBX2a)
          Length = 619

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 439 SRIAFGMIGLGDSICLFGGVIGPGPRNQCIKPLSDVDILNVTSERPTWRQ 290
           SR  F    +G+ + LFGG          ++PL D  +LN+ +E P W++
Sbjct: 304 SRCNFSACAVGNRLVLFGG------EGVNMQPLDDTFVLNLDAECPEWQR 347



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>DECR_MOUSE (Q9CQ62) 2,4-dienoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.34) (2,4-dienoyl-CoA reductase [NADPH])
           (4-enoyl-CoA reductase [NADPH])
          Length = 335

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -3

Query: 445 FQSRIAF---GMIGLGDSICLFGGVIGPGPRNQCIKPLSDVDILNVTSERPTWRQGSPMT 275
           FQ ++AF   G  GLG ++  F   +G     QC+    ++D+L  T+E  + + G+ + 
Sbjct: 57  FQGKVAFITGGGTGLGKAMTTFLSTLGA----QCVIASRNIDVLKATAEEISSKTGNKVH 112

Query: 274 RCRGSV 257
             R  V
Sbjct: 113 AIRCDV 118



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>CT032_HUMAN (Q9NQ75) HEF-like protein|
          Length = 786

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 28/93 (30%), Positives = 38/93 (40%)
 Frame = +3

Query: 258 TLPRQRVIGDPCRQVGLSLVTFKISTSDNGLMH*FLGPGPITPPNKHMLSPKPIMPKAIL 437
           + P+Q ++  P R V  SL T      D    H   GP  +  P K  L   P  PK   
Sbjct: 149 SFPKQAILTLP-RPVRASLPTLPSQVYDVPTQH--RGPVVLKEPEKQQLYDIPASPKKAG 205

Query: 438 LWNPDAQGTILSGKFSPCCFLMQLLLSTYNSPP 536
           L  PD+Q    SG+  P   +  L    Y++ P
Sbjct: 206 LHPPDSQA---SGQGVPLISVTTLRRGGYSTLP 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,464,067
Number of Sequences: 219361
Number of extensions: 2349446
Number of successful extensions: 5698
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5696
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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