ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23j17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger prote... 29 6.4
2REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing pro... 29 8.3

>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 392 DEASDAEHPKADP--LRAPPGHAALPDVHLDGEVDGERPE 505
           ++A  A  PKA P   RAPPG  A PD        G R E
Sbjct: 605 EDAPAARRPKAPPGPARAPPGQPAEPDAPRSSPGPGAREE 644



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>REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 743

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 386 GHDEASDAEHPKADPLRAPPGHAALPDVHLDGEVDG 493
           G  +A    HP A P R  P  A  P VH   + DG
Sbjct: 521 GQQQAGVVAHPPAVPPRPQPSQAPGPSVHRPVDADG 556


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,961,409
Number of Sequences: 219361
Number of extensions: 1291761
Number of successful extensions: 3138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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