ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23j06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234431.1|HVU234431 Hordeum vulgare partial mRNA; clone cMW... 242 3e-61
2emb|AJ606022.1| Triticum aestivum partial mRNA for putative micr... 123 2e-25
3ref|NG_005550.2| Homo sapiens neuroblastoma breakpoint family, m... 42 0.52
4emb|AL732363.8| Human DNA sequence from clone RP11-744H18 on chr... 42 0.52
5gb|AC129338.2| Homo sapiens BAC clone RP11-51A19 from UL, comple... 42 0.52
6gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, comple... 42 0.52
7gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, ... 42 0.52
8gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, comple... 42 0.52
9gb|AC150278.1| Pan troglodytes BAC clone CH251-126G17 from Y, co... 40 2.1
10gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, comple... 40 2.1
11emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on ch... 40 2.1
12dbj|BS000654.1| Pan troglodytes chromosome Y clone:PTB-129E12, c... 40 2.1
13gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 2.1
14gb|AC172374.4| Pan troglodytes BAC clone CH251-119H6 from chromo... 40 2.1
15gb|AC018696.4| Homo sapiens BAC clone RP11-575H3 from 2, complet... 40 2.1
16gb|AC150909.3| Pan troglodytes BAC clone CH251-1056O7 from chrom... 40 2.1
17gb|AC156805.2| Pan troglodytes BAC clone CH251-830G14 from chrom... 40 2.1
18gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, com... 40 2.1
19ref|XM_324180.1| Neurospora crassa OR74A predicted protein (NCU0... 38 8.1
20ref|XM_955290.1| Neurospora crassa OR74A hypothetical protein (N... 38 8.1
21gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, comp... 38 8.1
22gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, comp... 38 8.1
23gb|AC129782.3| Homo sapiens BAC clone RP11-28O7 from UL, complet... 38 8.1
24gb|AY096803.1| Helianthus annuus knotted-1-like protein 2 (kn2) ... 38 8.1
25emb|BX322639.2| Human DNA sequence from clone RP11-313J2 on chro... 38 8.1
26gb|AF254982.4| Homo sapiens chromosome 21 clone CTD-2503J9 map p... 38 8.1
27emb|AL590623.16| Human DNA sequence from clone RP11-96F8 on chro... 38 8.1
28emb|AL359255.12| Human DNA sequence from clone RP11-503N16 on ch... 38 8.1
29gb|AC129779.2| Homo sapiens BAC clone RP11-1360O11 from UL, comp... 38 8.1
30emb|AL121723.36|HSJ854E16 Human DNA sequence from clone RP5-854E... 38 8.1
31emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C1... 38 8.1
32gb|AC136932.4| Homo sapiens chromosome 16 clone CTD-2522B17, com... 38 8.1
33gb|AC127387.3| Homo sapiens BAC clone RP11-28J3 from UL, complet... 38 8.1
34gb|AC020760.6| Homo sapiens chromosome 16 clone RP11-151C19, com... 38 8.1
35gb|AC022370.28| Homo sapiens chromosome UL clone RP11-22O10, com... 38 8.1
36gb|AF298074.1|AF298074 Homo sapiens clone pE-1 microsatellite II... 38 8.1
37gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, comp... 38 8.1
38gb|AC025226.4|AC025226 Homo sapiens BAC clone RP11-57J19 from Y,... 38 8.1
39emb|BX649480.3| Human DNA sequence from clone RP11-22O10 on chro... 38 8.1
40emb|BX546479.5| Human DNA sequence from clone RP11-438N17 on chr... 38 8.1 
>emb|AJ234431.1|HVU234431 Hordeum vulgare partial mRNA; clone cMWG0705
          Length = 634

 Score =  242 bits (122), Expect = 3e-61
 Identities = 144/150 (96%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                       
Query: 18  ctaacgccgactcgacgtaaactactgccccgtcgncgtcgcggcgacacctagtattga 77
           ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 551 ctaacgccgac-cgaagtaaactactgccccgtcgtcgtcgcggcgacacctag-attga 494

                                                                       
Query: 78  ttgatcggagttccttaggtacgtacgtacagtgccttaattagttacatgatggactcg 137
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttgahcggagttccttaggtacgtacgtacagtgccttaattagttacatgatggactcg 434

                                         
Query: 138 aatggaatgatcccaatgnaacctatatgt 167
           |||||||||||||||||| |||||||||||
Sbjct: 433 aatggaatgatcccaatggaacctatatgt 404
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>emb|AJ606022.1| Triticum aestivum partial mRNA for putative microtubule-associated
           protein (p0700D12.21 gene)
          Length = 628

 Score =  123 bits (62), Expect = 2e-25
 Identities = 69/70 (98%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 76  gattgatcggagttccttaggtacgtacgtaca-gtgccttaattagttacatgatggac 134
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 613 gattgatcggagttccttaggtacgtacgtacaagtgccttaattagttacatgatggac 554

                     
Query: 135 tcgaatggaa 144
           ||||||||||
Sbjct: 553 tcgaatggaa 544
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>ref|NG_005550.2| Homo sapiens neuroblastoma breakpoint family, member 17 (pseudogene)
             (NBPF17P) on chromosome 1
          Length = 64687

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   atggactcgaatggaatgatc 149
             |||||||||||||||||||||
Sbjct: 54839 atggactcgaatggaatgatc 54859
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>emb|AL732363.8| Human DNA sequence from clone RP11-744H18 on chromosome 1 Contains a
             phosphodiesterase 4D interacting protein (myomegalin)
             (PDE4DIP) pseudogene and the 3' end of a novel pseudogene,
             complete sequence
          Length = 106538

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 129   atggactcgaatggaatgatc 149
             |||||||||||||||||||||
Sbjct: 30920 atggactcgaatggaatgatc 30900
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>gb|AC129338.2| Homo sapiens BAC clone RP11-51A19 from UL, complete sequence
          Length = 169277

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 129 atggactcgaatggaatgatc 149
           |||||||||||||||||||||
Sbjct: 12  atggactcgaatggaatgatc 32
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>gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, complete sequence
          Length = 161405

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    atggactcgaatggaatgatc 149
              |||||||||||||||||||||
Sbjct: 144918 atggactcgaatggaatgatc 144898



 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    atggactcgaatggaatgatc 149
              |||||||||||||||||||||
Sbjct: 102208 atggactcgaatggaatgatc 102188



 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   atggactcgaatggaatgatc 149
             |||||||||||||||||||||
Sbjct: 16295 atggactcgaatggaatgatc 16315
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>gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, complete sequence
          Length = 159722

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   atggactcgaatggaatgatc 149
             |||||||||||||||||||||
Sbjct: 33888 atggactcgaatggaatgatc 33908



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 128   gatggactcgaatggaatg 146
             |||||||||||||||||||
Sbjct: 42649 gatggactcgaatggaatg 42667



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 30585 atggactcgaatggaatga 30603



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 129  atggactcgaatggaatga 147
            |||||||||||||||||||
Sbjct: 3239 atggactcgaatggaatga 3257
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>gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, complete sequence
          Length = 190137

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   atggactcgaatggaatgatc 149
             |||||||||||||||||||||
Sbjct: 71803 atggactcgaatggaatgatc 71823



 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   atggactcgaatggaatgatc 149
             |||||||||||||||||||||
Sbjct: 29093 atggactcgaatggaatgatc 29113
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>gb|AC150278.1| Pan troglodytes BAC clone CH251-126G17 from Y, complete sequence
          Length = 171976

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 atggactcgaatggaatgat 148
           ||||||||||||||||||||
Sbjct: 516 atggactcgaatggaatgat 535



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 10361 atggactcgaatggaatga 10379
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>gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, complete sequence
          Length = 205515

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   tgatggactcgaatggaatg 146
             ||||||||||||||||||||
Sbjct: 99013 tgatggactcgaatggaatg 98994
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>emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on chromosome 10 Contains the
              3' end of a gene for a novel protein similar to
              17-beta-hydroxysteroid dehydrogenase type 7 (HSD17B7), the
              gene for a novel protein similar to CDC10 cell division
              cycle 10, homolog (S. cerevisiae) (CDC10), a novel gene, a
              novel gene containing FLJ14186, a capicua homolog
              (Drosophila) (CIC) pseudogene and a CpG island, complete
              sequence
          Length = 166835

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    tgatggactcgaatggaatg 146
              ||||||||||||||||||||
Sbjct: 166206 tgatggactcgaatggaatg 166225



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 164924 atggactcgaatggaatga 164942



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 128    gatggactcgaatggaatg 146
              |||||||||||||||||||
Sbjct: 162362 gatggactcgaatggaatg 162380



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 147908 atggactcgaatggaatga 147926



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 142530 atggactcgaatggaatga 142548



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 122276 atggactcgaatggaatga 122294



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 120951 atggactcgaatggaatga 120969
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>dbj|BS000654.1| Pan troglodytes chromosome Y clone:PTB-129E12, complete sequences
          Length = 193714

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    tgatggactcgaatggaatg 146
              ||||||||||||||||||||
Sbjct: 169111 tgatggactcgaatggaatg 169092



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   atggactcgaatggaatgat 148
             ||||||||||||||||||||
Sbjct: 96751 atggactcgaatggaatgat 96732



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 142928 atggactcgaatggaatga 142910



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 135856 atggactcgaatggaatga 135838



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 86896 atggactcgaatggaatga 86878
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 127     tgatggactcgaatggaatg 146
               ||||||||||||||||||||
Sbjct: 6013860 tgatggactcgaatggaatg 6013841



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 129     atggactcgaatggaatgat 148
               ||||||||||||||||||||
Sbjct: 5941535 atggactcgaatggaatgat 5941516



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 129     atggactcgaatggaatga 147
               |||||||||||||||||||
Sbjct: 5987687 atggactcgaatggaatga 5987669



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 129     atggactcgaatggaatga 147
               |||||||||||||||||||
Sbjct: 5980620 atggactcgaatggaatga 5980602



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 129     atggactcgaatggaatga 147
               |||||||||||||||||||
Sbjct: 5931690 atggactcgaatggaatga 5931672
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>gb|AC172374.4| Pan troglodytes BAC clone CH251-119H6 from chromosome y, complete
             sequence
          Length = 176115

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   tgatggactcgaatggaatg 146
             ||||||||||||||||||||
Sbjct: 47526 tgatggactcgaatggaatg 47507



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 21343 atggactcgaatggaatga 21325



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 14276 atggactcgaatggaatga 14258
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>gb|AC018696.4| Homo sapiens BAC clone RP11-575H3 from 2, complete sequence
          Length = 194995

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 129    atggactcgaatggaatgatccca 152
              ||||||||||||||||| ||||||
Sbjct: 177512 atggactcgaatggaatcatccca 177535
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>gb|AC150909.3| Pan troglodytes BAC clone CH251-1056O7 from chromosome y, complete
              sequence
          Length = 178039

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    tgatggactcgaatggaatg 146
              ||||||||||||||||||||
Sbjct: 174567 tgatggactcgaatggaatg 174548



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    atggactcgaatggaatgat 148
              ||||||||||||||||||||
Sbjct: 102242 atggactcgaatggaatgat 102223



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 148384 atggactcgaatggaatga 148366



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 141317 atggactcgaatggaatga 141299



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 92402 atggactcgaatggaatga 92384
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>gb|AC156805.2| Pan troglodytes BAC clone CH251-830G14 from chromosome y, complete
              sequence
          Length = 230623

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    atggactcgaatggaatgat 148
              ||||||||||||||||||||
Sbjct: 167411 atggactcgaatggaatgat 167430



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tgatggactcgaatggaatg 146
             ||||||||||||||||||||
Sbjct: 95086 tgatggactcgaatggaatg 95105



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 177256 atggactcgaatggaatga 177274



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 128326 atggactcgaatggaatga 128344



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 121259 atggactcgaatggaatga 121277
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>gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, complete sequence
          Length = 159831

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   atggactcgaatggaatgat 148
             ||||||||||||||||||||
Sbjct: 34768 atggactcgaatggaatgat 34787



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 128   gatggactcgaatggaatg 146
             |||||||||||||||||||
Sbjct: 24504 gatggactcgaatggaatg 24522



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 18679 atggactcgaatggaatga 18697



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 129  atggactcgaatggaatga 147
            |||||||||||||||||||
Sbjct: 5929 atggactcgaatggaatga 5911
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>ref|XM_324180.1| Neurospora crassa OR74A predicted protein (NCU04824.1) partial mRNA
          Length = 2340

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 126  atgatggactcgaatggaa 144
            |||||||||||||||||||
Sbjct: 1606 atgatggactcgaatggaa 1624
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>ref|XM_955290.1| Neurospora crassa OR74A hypothetical protein (NCU04824.1) partial
            mRNA
          Length = 2340

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 126  atgatggactcgaatggaa 144
            |||||||||||||||||||
Sbjct: 1606 atgatggactcgaatggaa 1624
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>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence
          Length = 188992

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 88472 atggactcgaatggaatga 88490



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 88072 atggactcgaatggaatga 88090



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 83149 atggactcgaatggaatga 83167



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 82749 atggactcgaatggaatga 82767
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>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence
          Length = 178925

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 65279 atggactcgaatggaatga 65297



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 64879 atggactcgaatggaatga 64897



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 59941 atggactcgaatggaatga 59959



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 59541 atggactcgaatggaatga 59559
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>gb|AC129782.3| Homo sapiens BAC clone RP11-28O7 from UL, complete sequence
          Length = 66860

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 131  ggactcgaatggaatgatc 149
            |||||||||||||||||||
Sbjct: 2542 ggactcgaatggaatgatc 2524
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>gb|AY096803.1| Helianthus annuus knotted-1-like protein 2 (kn2) mRNA, complete cds
          Length = 1423

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 93   taggtacgtacgtacagtg 111
            |||||||||||||||||||
Sbjct: 1394 taggtacgtacgtacagtg 1376
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>emb|BX322639.2| Human DNA sequence from clone RP11-313J2 on chromosome 10 Contains a
             zinc finger protein pseudogene and a CpG island, complete
             sequence
          Length = 87299

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 12311 atggactcgaatggaatga 12293
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>gb|AF254982.4| Homo sapiens chromosome 21 clone CTD-2503J9 map p11-q21.1, complete
              sequence
          Length = 211345

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 160296 atggactcgaatggaatga 160314



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 158613 atggactcgaatggaatga 158631



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 128    gatggactcgaatggaatg 146
              |||||||||||||||||||
Sbjct: 144513 gatggactcgaatggaatg 144531



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 128    gatggactcgaatggaatg 146
              |||||||||||||||||||
Sbjct: 144489 gatggactcgaatggaatg 144507



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 128    gatggactcgaatggaatg 146
              |||||||||||||||||||
Sbjct: 144465 gatggactcgaatggaatg 144483



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 128    gatggactcgaatggaatg 146
              |||||||||||||||||||
Sbjct: 118107 gatggactcgaatggaatg 118125



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 109857 atggactcgaatggaatga 109875
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>emb|AL590623.16| Human DNA sequence from clone RP11-96F8 on chromosome 10 Contains a
             N-acetylated alpha-linked acidic dipeptidase 2 (NAALAD2)
             pseudogene, complete sequence
          Length = 81908

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 77400 atggactcgaatggaatga 77418



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 75391 atggactcgaatggaatga 75409



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 72349 atggactcgaatggaatga 72367



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 66260 atggactcgaatggaatga 66278



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   gatggactcgaatggaatg 146
             |||||||||||||||||||
Sbjct: 10600 gatggactcgaatggaatg 10582
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>emb|AL359255.12| Human DNA sequence from clone RP11-503N16 on chromosome 1 Contains the
             5' end of the PBX1 gene for pre-B-cell leukemia
             transcription factor 1, complete sequence
          Length = 20809

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 105   tacagtgccttaattagttacat 127
             |||||||||||||||| ||||||
Sbjct: 16599 tacagtgccttaattatttacat 16577
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>gb|AC129779.2| Homo sapiens BAC clone RP11-1360O11 from UL, complete sequence
          Length = 28549

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 129  atggactcgaatggaatga 147
            |||||||||||||||||||
Sbjct: 7589 atggactcgaatggaatga 7571
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>emb|AL121723.36|HSJ854E16 Human DNA sequence from clone RP5-854E16 on chromosome 20 Contains a
             DKKL1-pending (soggy-1) (SGY-1) pseudogene and part of a
             CDK5 regulatory subunit associated protein 3 (CDK5RAP3)
             pseudogene, complete sequence
          Length = 70452

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 25099 atggactcgaatggaatga 25117



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 15490 atggactcgaatggaatga 15508



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 12908 atggactcgaatggaatga 12926
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>emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C10 on chromosome 10 Contains a
              poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene,
              an Ig kappa chain precursor V region pseudogene, a
              pseudogene similar to part of kinase suppressor of ras
              (KSR) and four CpG islands, complete sequence
          Length = 197700

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 194135 atggactcgaatggaatga 194117
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>gb|AC136932.4| Homo sapiens chromosome 16 clone CTD-2522B17, complete sequence
          Length = 171882

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 152824 atggactcgaatggaatga 152806



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 147007 atggactcgaatggaatga 146989
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>gb|AC127387.3| Homo sapiens BAC clone RP11-28J3 from UL, complete sequence
          Length = 47702

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 21012 atggactcgaatggaatga 20994
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>gb|AC020760.6| Homo sapiens chromosome 16 clone RP11-151C19, complete sequence
          Length = 188872

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 55178 atggactcgaatggaatga 55196



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 53169 atggactcgaatggaatga 53187



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 50137 atggactcgaatggaatga 50155



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 44042 atggactcgaatggaatga 44060
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>gb|AC022370.28| Homo sapiens chromosome UL clone RP11-22O10, complete sequence
          Length = 179013

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 35830 atggactcgaatggaatga 35812



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   gatggactcgaatggaatg 146
             |||||||||||||||||||
Sbjct: 26961 gatggactcgaatggaatg 26943
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>gb|AF298074.1|AF298074 Homo sapiens clone pE-1 microsatellite III sequence
          Length = 1748

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 128 gatggactcgaatggaatg 146
           |||||||||||||||||||
Sbjct: 820 gatggactcgaatggaatg 838
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>gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, complete sequence
          Length = 184644

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 128    gatggactcgaatggaatg 146
              |||||||||||||||||||
Sbjct: 115304 gatggactcgaatggaatg 115322
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>gb|AC025226.4|AC025226 Homo sapiens BAC clone RP11-57J19 from Y, complete sequence
          Length = 168066

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    atggactcgaatggaatga 147
              |||||||||||||||||||
Sbjct: 163744 atggactcgaatggaatga 163762



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 128    gatggactcgaatggaatg 146
              |||||||||||||||||||
Sbjct: 162900 gatggactcgaatggaatg 162918
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>emb|BX649480.3| Human DNA sequence from clone RP11-22O10 on chromosome 10, complete
             sequence
          Length = 181432

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 35830 atggactcgaatggaatga 35812



 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   gatggactcgaatggaatg 146
             |||||||||||||||||||
Sbjct: 26961 gatggactcgaatggaatg 26943
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>emb|BX546479.5| Human DNA sequence from clone RP11-438N17 on chromosome 22, complete
             sequence
          Length = 172294

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   atggactcgaatggaatga 147
             |||||||||||||||||||
Sbjct: 67640 atggactcgaatggaatga 67622


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 753,439
Number of Sequences: 3902068
Number of extensions: 753439
Number of successful extensions: 55848
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46388
Number of HSP's gapped (non-prelim): 9458
length of query: 167
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 145
effective length of database: 17,147,199,772
effective search space: 2486343966940
effective search space used: 2486343966940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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