ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23i18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474146.1| Oryza sativa (japonica cultivar-group), predic... 379 e-102
2dbj|AK104831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 379 e-102
3dbj|AK072809.1| Oryza sativa (japonica cultivar-group) cDNA clon... 379 e-102
4emb|X96761.1|SSSULPTRP S.stapfianus mRNA for sulphate transporte... 266 8e-68
5gb|AY105934.1| Zea mays PCO089998 mRNA sequence 260 5e-66
6emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4,... 143 8e-31
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
8emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4,... 143 8e-31
9gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome... 48 0.033
10gb|AC149154.3| Xenopus tropicalis clone ISB-241F10, complete seq... 42 2.0
11gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, com... 42 2.0
12gb|AC079848.16| Homo sapiens 3 BAC RP11-124N2 (Roswell Park Canc... 42 2.0
13gb|AC104956.6| Homo sapiens chromosome 18, clone RP11-646H8, com... 42 2.0
14gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete s... 42 2.0
15gb|AC104367.6| Homo sapiens chromosome 18, clone RP11-126G14, co... 42 2.0
16gb|AY263324.1| Borrelia hermsii strain HS1 lolA locus, partial s... 40 8.1
17emb|BX901970.11| Zebrafish DNA sequence from clone CH211-214I7 i... 40 8.1
18emb|BX005426.16| Zebrafish DNA sequence from clone DKEY-1H24 in ... 40 8.1
19emb|CR352290.10| Zebrafish DNA sequence from clone DKEY-107G12 i... 40 8.1
20ref|XM_762861.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 8.1
21gb|AC101969.6| Mus musculus chromosome 17, clone RP24-259G8, com... 40 8.1
22emb|BX323802.24| Zebrafish DNA sequence from clone DKEY-104I9 in... 40 8.1
23emb|AL713868.12| Human DNA sequence from clone RP11-488L4 on chr... 40 8.1
24emb|AL136234.12| Human DNA sequence from clone RP5-933B4 on chro... 40 8.1
25emb|CR759788.7| Zebrafish DNA sequence from clone CH211-153F13, ... 40 8.1
26gb|DQ283207.1| Choerophryne sp. ABTC 47720 12S ribosomal RNA gen... 40 8.1
27gb|AF404760.1|AF404760 Mus musculus alpha,alpha-trehalase (Treh)... 40 8.1
28gb|AF333597.1|AF333597 Xyrauchen texanus 12S ribosomal RNA gene,... 40 8.1
29emb|CR352652.1| Gallus gallus finished cDNA, clone ChEST423b12 40 8.1
30gb|AC016955.15| Homo sapiens 3 BAC RP11-21I16 (Roswell Park Canc... 40 8.1
31gb|AC142113.2| Mus musculus BAC clone RP23-444K20 from chromosom... 40 8.1
32emb|BX572085.6| Mouse DNA sequence from clone RP23-211E14 on chr... 40 8.1
33gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complet... 40 8.1
34emb|CR759796.17| Zebrafish DNA sequence from clone DKEY-18A10 in... 40 8.1
35emb|CR954297.15| Zebrafish DNA sequence from clone DKEY-69M3 in ... 40 8.1
36emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chro... 40 8.1
37gb|AC171209.1| Mus musculus BAC clone RP23-105E1 from chromosome... 40 8.1 
>ref|XM_474146.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1890

 Score =  379 bits (191), Expect = e-102
 Identities = 281/311 (90%)
 Strand = Plus / Minus

                                                                        
Query: 274  gcatcgttcgctcgttgtattttctccataacctctccggttggattcacaagtacaagc 333
            ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| ||||
Sbjct: 1799 gcatcattcgctcgttgtatcttctccatgacctctccagttggattcacaagtataagc 1740

                                                                        
Query: 334  tctaggccatgcttctctgttgatttctttaggtcgatgaggaatgctatgccgcttgtg 393
            ||||| ||||||||||||||||||||||| | |||||||||||| | |||||| ||||| 
Sbjct: 1739 tctagtccatgcttctctgttgatttcttcaagtcgatgaggaacgatatgccacttgta 1680

                                                                        
Query: 394  tcaattgcagggacagctgatagatccaagattacgacacggagttcactttgtttattc 453
            |||||||||||||||||||| |||||||| ||||||| | ||||||||||||||||  | 
Sbjct: 1679 tcaattgcagggacagctgacagatccaaaattacgaaatggagttcactttgtttggtt 1620

                                                                        
Query: 454  cctgaaaaactttcatcctctatccatcttttagtcctttcatttaggtagttggtgttt 513
            |||| | ||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1619 cctgcagaactttcttcttctatccatcttttaatcctttcatttaggtagttggtgttt 1560

                                                                        
Query: 514  gcaaagtttataggagcctcaattgtcagtatcaagaatccaggaactctttgagcctcc 573
            |||||||||||||||||||||| |||||| || ||||| ||||||||||||||||| |||
Sbjct: 1559 gcaaagtttataggagcctcaactgtcaggattaagaacccaggaactctttgagcgtcc 1500

                       
Query: 574  ttatactgatg 584
            || ||||||||
Sbjct: 1499 ttgtactgatg 1489
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>dbj|AK104831.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A04, full
            insert sequence
          Length = 2181

 Score =  379 bits (191), Expect = e-102
 Identities = 281/311 (90%)
 Strand = Plus / Minus

                                                                        
Query: 274  gcatcgttcgctcgttgtattttctccataacctctccggttggattcacaagtacaagc 333
            ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| ||||
Sbjct: 1969 gcatcattcgctcgttgtatcttctccatgacctctccagttggattcacaagtataagc 1910

                                                                        
Query: 334  tctaggccatgcttctctgttgatttctttaggtcgatgaggaatgctatgccgcttgtg 393
            ||||| ||||||||||||||||||||||| | |||||||||||| | |||||| ||||| 
Sbjct: 1909 tctagtccatgcttctctgttgatttcttcaagtcgatgaggaacgatatgccacttgta 1850

                                                                        
Query: 394  tcaattgcagggacagctgatagatccaagattacgacacggagttcactttgtttattc 453
            |||||||||||||||||||| |||||||| ||||||| | ||||||||||||||||  | 
Sbjct: 1849 tcaattgcagggacagctgacagatccaaaattacgaaatggagttcactttgtttggtt 1790

                                                                        
Query: 454  cctgaaaaactttcatcctctatccatcttttagtcctttcatttaggtagttggtgttt 513
            |||| | ||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1789 cctgcagaactttcttcttctatccatcttttaatcctttcatttaggtagttggtgttt 1730

                                                                        
Query: 514  gcaaagtttataggagcctcaattgtcagtatcaagaatccaggaactctttgagcctcc 573
            |||||||||||||||||||||| |||||| || ||||| ||||||||||||||||| |||
Sbjct: 1729 gcaaagtttataggagcctcaactgtcaggattaagaacccaggaactctttgagcgtcc 1670

                       
Query: 574  ttatactgatg 584
            || ||||||||
Sbjct: 1669 ttgtactgatg 1659
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>dbj|AK072809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141I19, full
            insert sequence
          Length = 2338

 Score =  379 bits (191), Expect = e-102
 Identities = 281/311 (90%)
 Strand = Plus / Minus

                                                                        
Query: 274  gcatcgttcgctcgttgtattttctccataacctctccggttggattcacaagtacaagc 333
            ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| ||||
Sbjct: 1975 gcatcattcgctcgttgtatcttctccatgacctctccagttggattcacaagtataagc 1916

                                                                        
Query: 334  tctaggccatgcttctctgttgatttctttaggtcgatgaggaatgctatgccgcttgtg 393
            ||||| ||||||||||||||||||||||| | |||||||||||| | |||||| ||||| 
Sbjct: 1915 tctagtccatgcttctctgttgatttcttcaagtcgatgaggaacgatatgccacttgta 1856

                                                                        
Query: 394  tcaattgcagggacagctgatagatccaagattacgacacggagttcactttgtttattc 453
            |||||||||||||||||||| |||||||| ||||||| | ||||||||||||||||  | 
Sbjct: 1855 tcaattgcagggacagctgacagatccaaaattacgaaatggagttcactttgtttggtt 1796

                                                                        
Query: 454  cctgaaaaactttcatcctctatccatcttttagtcctttcatttaggtagttggtgttt 513
            |||| | ||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1795 cctgcagaactttcttcttctatccatcttttaatcctttcatttaggtagttggtgttt 1736

                                                                        
Query: 514  gcaaagtttataggagcctcaattgtcagtatcaagaatccaggaactctttgagcctcc 573
            |||||||||||||||||||||| |||||| || ||||| ||||||||||||||||| |||
Sbjct: 1735 gcaaagtttataggagcctcaactgtcaggattaagaacccaggaactctttgagcgtcc 1676

                       
Query: 574  ttatactgatg 584
            || ||||||||
Sbjct: 1675 ttgtactgatg 1665
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>emb|X96761.1|SSSULPTRP S.stapfianus mRNA for sulphate transporter protein
          Length = 2515

 Score =  266 bits (134), Expect = 8e-68
 Identities = 347/414 (83%), Gaps = 3/414 (0%)
 Strand = Plus / Minus

                                                                        
Query: 182  tctaaggtgttgccatcttggcaaatccagaaagtgaagcgattgcttccccggtggtca 241
            |||| |||| |||||||||||| |   ||||||| ||||| | ||||||||| |||||||
Sbjct: 2038 tctagggtgatgccatcttggctagcgcagaaagggaagcaactgcttccccagtggtca 1979

                                                                        
Query: 242  a-atagaggcagtcctg-cctgaaatgattgtgtgcatcgttcgctcgttgtattttctc 299
            | ||| ||||| ||| | |||||||||  ||||||| |||||| |||| |||||||| ||
Sbjct: 1978 agatacaggcaatcccgacctgaaatgcctgtgtgcctcgttcactcgctgtattttttc 1919

                                                                        
Query: 300  cataacc-tctccggttggattcacaagtacaagctctaggccatgcttctctgttgatt 358
            ||| ||| ||||||||||||||||||||||||||||| || ||| |||| ||| ||||||
Sbjct: 1918 catgaccctctccggttggattcacaagtacaagctccagtccacgcttttctattgatt 1859

                                                                        
Query: 359  tctttaggtcgatgaggaatgctatgccgcttgtgtcaattgcagggacagctgatagat 418
            | |||| ||| |||||||||||||  || ||||||||||| ||||| |||||||| ||||
Sbjct: 1858 tttttatgtcaatgaggaatgctacaccacttgtgtcaatcgcaggaacagctgacagat 1799

                                                                        
Query: 419  ccaagattacgacacggagttcactttgtttattccctgaaaaactttcatcctctatcc 478
            |||| |||||||  ||||| ||  |||||||| ||  || | ||||||| ||||||||||
Sbjct: 1798 ccaaaattacgaatcggagctctgtttgtttagtctgtgcagaactttcttcctctatcc 1739

                                                                        
Query: 479  atcttttagtcctttcatttaggtagttggtgtttgcaaagtttataggagcctcaattg 538
            |||||||  |||||||||| || |||||| |||| ||||||||||| || || ||| |||
Sbjct: 1738 atcttttgatcctttcattcagatagttgctgttcgcaaagtttattggtgcttcagttg 1679

                                                                  
Query: 539  tcagtatcaagaatccaggaactctttgagcctccttatactgatggaggttcc 592
              || || ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 1678 ctaggattaagaacccaggaattctttgagcatccttgtactgatggaggttcc 1625
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>gb|AY105934.1| Zea mays PCO089998 mRNA sequence
          Length = 2279

 Score =  260 bits (131), Expect = 5e-66
 Identities = 329/395 (83%)
 Strand = Plus / Minus

                                                                        
Query: 195  catcttggcaaatccagaaagtgaagcgattgcttccccggtggtcaaatagaggcagtc 254
            ||||||||||| | |||||||||||||||||||||| || ||||||| ||| | ||| ||
Sbjct: 2057 catcttggcaagtgcagaaagtgaagcgattgcttcgccagtggtcagatacaagcaatc 1998

                                                                        
Query: 255  ctgcctgaaatgattgtgtgcatcgttcgctcgttgtattttctccataacctctccggt 314
              |||| ||||  || |  || ||||| || ||||||||||||||||| || ||||| ||
Sbjct: 1997 tggcctaaaatagttttcagcctcgtttgcacgttgtattttctccatgacttctccagt 1938

                                                                        
Query: 315  tggattcacaagtacaagctctaggccatgcttctctgttgatttctttaggtcgatgag 374
            |||||| ||||| |||||||| || ||| | |||||| |||||||||||| ||| |||||
Sbjct: 1937 tggattgacaagcacaagctccagaccacgtttctctattgatttctttatgtcaatgag 1878

                                                                        
Query: 375  gaatgctatgccgcttgtgtcaattgcagggacagctgatagatccaagattacgacacg 434
            ||| |||||||| ||||||||||||||||| |||||||| ||||||||||||| || | |
Sbjct: 1877 gaacgctatgccacttgtgtcaattgcaggaacagctgacagatccaagattatgaaatg 1818

                                                                        
Query: 435  gagttcactttgtttattccctgaaaaactttcatcctctatccatcttttagtcctttc 494
            ||||||| | ||||||| |  |  ||||  ||| |||||||||||||||||| |||||||
Sbjct: 1817 gagttcagtatgtttatcctgttcaaaagattcttcctctatccatcttttaatcctttc 1758

                                                                        
Query: 495  atttaggtagttggtgtttgcaaagtttataggagcctcaattgtcagtatcaagaatcc 554
            ||| |||||||||| ||| || |||||||| || || ||||| | ||  |||||||| ||
Sbjct: 1757 attcaggtagttggagttggcgaagtttatcggtgcttcaatggccaagatcaagaaccc 1698

                                               
Query: 555  aggaactctttgagcctccttatactgatggaggt 589
            || ||||||||| |||||||| || ||||| ||||
Sbjct: 1697 agaaactctttgggcctccttgtagtgatgcaggt 1663
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>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Plus

                                                                         
Query: 489   cctttcatttaggtagttggtgtttgcaaagtttataggagcctcaattgtcagtatcaa 548
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct: 22164 cctttcatttaggtagttggtgtttgcaaagtttataggagcctcaactgtcaggattaa 22223

                                                 
Query: 549   gaatccaggaactctttgagcctccttatactgatg 584
             ||| ||||||||||||||||| ||||| ||||||||
Sbjct: 22224 gaacccaggaactctttgagcgtccttgtactgatg 22259



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Plus

                                                                         
Query: 333   ctctaggccatgcttctctgttgatttctttaggtcgatgaggaatgctatgccgcttgt 392
             |||||| ||||||||||||||||||||||| | |||||||||||| | |||||| |||||
Sbjct: 21782 ctctagtccatgcttctctgttgatttcttcaagtcgatgaggaacgatatgccacttgt 21841

                                  
Query: 393   gtcaattgcagggacagctga 413
              ||||||||||||||||||||
Sbjct: 21842 atcaattgcagggacagctga 21862



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 274   gcatcgttcgctcgttgtattttctccataacctctccggttggattcacaagtacaagc 333
             ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| ||||
Sbjct: 21562 gcatcattcgctcgttgtatcttctccatgacctctccagttggattcacaagtataagc 21621

              
Query: 334   t 334
             |
Sbjct: 21622 t 21622



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                         
Query: 410   ctgatagatccaagattacgacacggagttcactttgtttattccctgaaaaactttcat 469
             |||| |||||||| ||||||| | ||||||||||||||||  | |||| | ||||||| |
Sbjct: 21996 ctgacagatccaaaattacgaaatggagttcactttgtttggttcctgcagaactttctt 22055

                                   
Query: 470   cctctatccatcttttagtcct 491
             | ||||||||||||||| ||||
Sbjct: 22056 cttctatccatcttttaatcct 22077
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Plus

                                                                            
Query: 489      cctttcatttaggtagttggtgtttgcaaagtttataggagcctcaattgtcagtatcaa 548
                ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct: 33249903 cctttcatttaggtagttggtgtttgcaaagtttataggagcctcaactgtcaggattaa 33249962

                                                    
Query: 549      gaatccaggaactctttgagcctccttatactgatg 584
                ||| ||||||||||||||||| ||||| ||||||||
Sbjct: 33249963 gaacccaggaactctttgagcgtccttgtactgatg 33249998



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Plus

                                                                            
Query: 333      ctctaggccatgcttctctgttgatttctttaggtcgatgaggaatgctatgccgcttgt 392
                |||||| ||||||||||||||||||||||| | |||||||||||| | |||||| |||||
Sbjct: 33249521 ctctagtccatgcttctctgttgatttcttcaagtcgatgaggaacgatatgccacttgt 33249580

                                     
Query: 393      gtcaattgcagggacagctga 413
                 ||||||||||||||||||||
Sbjct: 33249581 atcaattgcagggacagctga 33249601



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                            
Query: 274      gcatcgttcgctcgttgtattttctccataacctctccggttggattcacaagtacaagc 333
                ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| ||||
Sbjct: 33249301 gcatcattcgctcgttgtatcttctccatgacctctccagttggattcacaagtataagc 33249360

                 
Query: 334      t 334
                |
Sbjct: 33249361 t 33249361



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                            
Query: 410      ctgatagatccaagattacgacacggagttcactttgtttattccctgaaaaactttcat 469
                |||| |||||||| ||||||| | ||||||||||||||||  | |||| | ||||||| |
Sbjct: 33249735 ctgacagatccaaaattacgaaatggagttcactttgtttggttcctgcagaactttctt 33249794

                                      
Query: 470      cctctatccatcttttagtcct 491
                | ||||||||||||||| ||||
Sbjct: 33249795 cttctatccatcttttaatcct 33249816
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>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
              complete sequence
          Length = 165745

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Plus

                                                                          
Query: 489    cctttcatttaggtagttggtgtttgcaaagtttataggagcctcaattgtcagtatcaa 548
              ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct: 132552 cctttcatttaggtagttggtgtttgcaaagtttataggagcctcaactgtcaggattaa 132611

                                                  
Query: 549    gaatccaggaactctttgagcctccttatactgatg 584
              ||| ||||||||||||||||| ||||| ||||||||
Sbjct: 132612 gaacccaggaactctttgagcgtccttgtactgatg 132647



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Plus

                                                                          
Query: 333    ctctaggccatgcttctctgttgatttctttaggtcgatgaggaatgctatgccgcttgt 392
              |||||| ||||||||||||||||||||||| | |||||||||||| | |||||| |||||
Sbjct: 132170 ctctagtccatgcttctctgttgatttcttcaagtcgatgaggaacgatatgccacttgt 132229

                                   
Query: 393    gtcaattgcagggacagctga 413
               ||||||||||||||||||||
Sbjct: 132230 atcaattgcagggacagctga 132250



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                          
Query: 274    gcatcgttcgctcgttgtattttctccataacctctccggttggattcacaagtacaagc 333
              ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| ||||
Sbjct: 131950 gcatcattcgctcgttgtatcttctccatgacctctccagttggattcacaagtataagc 132009

               
Query: 334    t 334
              |
Sbjct: 132010 t 132010



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                          
Query: 410    ctgatagatccaagattacgacacggagttcactttgtttattccctgaaaaactttcat 469
              |||| |||||||| ||||||| | ||||||||||||||||  | |||| | ||||||| |
Sbjct: 132384 ctgacagatccaaaattacgaaatggagttcactttgtttggttcctgcagaactttctt 132443

                                    
Query: 470    cctctatccatcttttagtcct 491
              | ||||||||||||||| ||||
Sbjct: 132444 cttctatccatcttttaatcct 132465
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>gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome 17, complete sequence
          Length = 191739

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 116    gatgagaaggcaatgcaaatttag 139
              ||||||||||||||||||||||||
Sbjct: 131895 gatgagaaggcaatgcaaatttag 131872
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>gb|AC149154.3| Xenopus tropicalis clone ISB-241F10, complete sequence
          Length = 96260

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   cagaaagtgaagcgattgctt 229
             |||||||||||||||||||||
Sbjct: 76531 cagaaagtgaagcgattgctt 76511
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>gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, complete sequence
          Length = 252723

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 253   tcctgcctgaaatgattgtgt 273
             |||||||||||||||||||||
Sbjct: 55297 tcctgcctgaaatgattgtgt 55277
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>gb|AC079848.16| Homo sapiens 3 BAC RP11-124N2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161987

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 552   tccaggaactctttgagcctc 572
             |||||||||||||||||||||
Sbjct: 70768 tccaggaactctttgagcctc 70748
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>gb|AC104956.6| Homo sapiens chromosome 18, clone RP11-646H8, complete sequence
          Length = 157587

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 68    atagctacaaacaaacttgtgaaat 92
             ||||||||||||||| |||||||||
Sbjct: 40254 atagctacaaacaaaattgtgaaat 40278
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>gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete sequence
          Length = 132878

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     atttcctcacatagacttgaa 56
              |||||||||||||||||||||
Sbjct: 102426 atttcctcacatagacttgaa 102406
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>gb|AC104367.6| Homo sapiens chromosome 18, clone RP11-126G14, complete sequence
          Length = 163931

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 68     atagctacaaacaaacttgtgaaat 92
              ||||||||||||||| |||||||||
Sbjct: 151425 atagctacaaacaaaattgtgaaat 151401
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>gb|AY263324.1| Borrelia hermsii strain HS1 lolA locus, partial sequence
          Length = 4637

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  gatgatcaaaatggcaattc 170
            ||||||||||||||||||||
Sbjct: 1778 gatgatcaaaatggcaattc 1797
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>emb|BX901970.11| Zebrafish DNA sequence from clone CH211-214I7 in linkage group 1,
             complete sequence
          Length = 22414

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   tgcaaatttagcattgcaat 148
             ||||||||||||||||||||
Sbjct: 16379 tgcaaatttagcattgcaat 16360
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>emb|BX005426.16| Zebrafish DNA sequence from clone DKEY-1H24 in linkage group 1, complete
              sequence
          Length = 202018

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    tgcaaatttagcattgcaat 148
              ||||||||||||||||||||
Sbjct: 183398 tgcaaatttagcattgcaat 183417
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>emb|CR352290.10| Zebrafish DNA sequence from clone DKEY-107G12 in linkage group 18,
            complete sequence
          Length = 137797

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  ctaaggtgttgccatcttgg 202
            ||||||||||||||||||||
Sbjct: 1804 ctaaggtgttgccatcttgg 1823
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>ref|XM_762861.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_228_6683_7273)
           partial mRNA
          Length = 591

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 358 ttctttaggtcgatgaggaa 377
           ||||||||||||||||||||
Sbjct: 578 ttctttaggtcgatgaggaa 559
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>gb|AC101969.6| Mus musculus chromosome 17, clone RP24-259G8, complete sequence
          Length = 219711

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 13    aatgtacatatttcaagcacctaatttc 40
             |||||||||||| |||| ||||||||||
Sbjct: 53617 aatgtacatattccaagtacctaatttc 53590
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>emb|BX323802.24| Zebrafish DNA sequence from clone DKEY-104I9 in linkage group 10,
             complete sequence
          Length = 109743

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   ttcacaagtacaagctctag 338
             ||||||||||||||||||||
Sbjct: 71726 ttcacaagtacaagctctag 71745
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>emb|AL713868.12| Human DNA sequence from clone RP11-488L4 on chromosome 1 Contains the
             5' end of the SLC35F3 gene for solute carrier family 35
             member F3 and a CpG island, complete sequence
          Length = 108012

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    acttgaagggcactgaagat 69
             ||||||||||||||||||||
Sbjct: 67076 acttgaagggcactgaagat 67095
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>emb|AL136234.12| Human DNA sequence from clone RP5-933B4 on chromosome 1p22.3-31.1
             Contains a novel gene and the 5' end of a novel gene,
             complete sequence
          Length = 119481

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   ctttcatttaggtagttggt 509
             ||||||||||||||||||||
Sbjct: 46947 ctttcatttaggtagttggt 46928
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>emb|CR759788.7| Zebrafish DNA sequence from clone CH211-153F13, complete sequence
          Length = 197075

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   aatttagcattgcaatcaga 152
             ||||||||||||||||||||
Sbjct: 10534 aatttagcattgcaatcaga 10553
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>gb|DQ283207.1| Choerophryne sp. ABTC 47720 12S ribosomal RNA gene, partial sequence;
            tRNA-Val gene, complete sequence; and 16S ribosomal RNA
            gene, partial sequence; mitochondrial
          Length = 2396

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 516  aaagtttataggagcctcaa 535
            ||||||||||||||||||||
Sbjct: 1086 aaagtttataggagcctcaa 1105
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>gb|AF404760.1|AF404760 Mus musculus alpha,alpha-trehalase (Treh) gene, exons 2 through 15
            and partial cds
          Length = 5617

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  agggacagctgatagatcca 421
            ||||||||||||||||||||
Sbjct: 4065 agggacagctgatagatcca 4084
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>gb|AF333597.1|AF333597 Xyrauchen texanus 12S ribosomal RNA gene, partial sequence; tRNA-Val
            gene, complete sequence; and 16S ribosomal RNA gene,
            partial sequence; mitochondrial genes for mitochondrial
            products
          Length = 2703

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 483  tttagtcctttcatttaggt 502
            ||||||||||||||||||||
Sbjct: 1096 tttagtcctttcatttaggt 1077
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>emb|CR352652.1| Gallus gallus finished cDNA, clone ChEST423b12
          Length = 1187

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 128 atgcaaatttagcattgcaatcag 151
           ||||||||||||||||||| ||||
Sbjct: 339 atgcaaatttagcattgcactcag 316
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>gb|AC016955.15| Homo sapiens 3 BAC RP11-21I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169343

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 116   gatgagaaggcaatgcaaatttagcatt 143
             ||||| |||||||||||||| |||||||
Sbjct: 12548 gatgataaggcaatgcaaatatagcatt 12521
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>gb|AC142113.2| Mus musculus BAC clone RP23-444K20 from chromosome 9, complete sequence
          Length = 188724

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   agggacagctgatagatcca 421
             ||||||||||||||||||||
Sbjct: 60237 agggacagctgatagatcca 60256
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>emb|BX572085.6| Mouse DNA sequence from clone RP23-211E14 on chromosome 4, complete
             sequence
          Length = 147505

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   aggtagttggtgtttgcaaa 518
             ||||||||||||||||||||
Sbjct: 53745 aggtagttggtgtttgcaaa 53726
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>gb|AC151971.3| Mus musculus BAC clone RP24-282C4 from 9, complete sequence
          Length = 179607

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   agggacagctgatagatcca 421
             ||||||||||||||||||||
Sbjct: 37722 agggacagctgatagatcca 37703
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>emb|CR759796.17| Zebrafish DNA sequence from clone DKEY-18A10 in linkage group 10,
             complete sequence
          Length = 130961

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   ttcacaagtacaagctctag 338
             ||||||||||||||||||||
Sbjct: 43315 ttcacaagtacaagctctag 43296
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>emb|CR954297.15| Zebrafish DNA sequence from clone DKEY-69M3 in linkage group 8,
             complete sequence
          Length = 232837

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 450   attccctgaaaaactttcat 469
             ||||||||||||||||||||
Sbjct: 34747 attccctgaaaaactttcat 34728
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>emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chromosome 17, complete
              sequence
          Length = 241014

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 13     aatgtacatatttcaagcacctaatttc 40
              |||||||||||| |||| ||||||||||
Sbjct: 153552 aatgtacatattccaagtacctaatttc 153525
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>gb|AC171209.1| Mus musculus BAC clone RP23-105E1 from chromosome 17, complete sequence
          Length = 212184

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 13    aatgtacatatttcaagcacctaatttc 40
             |||||||||||| |||| ||||||||||
Sbjct: 91071 aatgtacatattccaagtacctaatttc 91044


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,589,134
Number of Sequences: 3902068
Number of extensions: 5589134
Number of successful extensions: 114209
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114071
Number of HSP's gapped (non-prelim): 136
length of query: 594
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 571
effective length of database: 17,143,297,704
effective search space: 9788822988984
effective search space used: 9788822988984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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