ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal23i02 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 105 bits (263), Expect = 2e-23 Identities = 50/56 (89%), Positives = 52/56 (92%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLITATV DGKLY+CKAQAGDKRWFKGAKKFVENAA SFS+A Sbjct: 205 VLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 105 bits (263), Expect = 2e-23 Identities = 50/56 (89%), Positives = 52/56 (92%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLITATV DGKLY+CKAQAGDKRWFKGAKKFVENAA SFS+A Sbjct: 203 VLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 103 bits (257), Expect = 1e-22 Identities = 49/56 (87%), Positives = 51/56 (91%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLITATV DGKLY+CKAQAGDKRWFKGA+KFVE AA SFSVA Sbjct: 208 VLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 103 bits (256), Expect = 2e-22 Identities = 52/56 (92%), Positives = 52/56 (92%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLITATVADGKLYVCKAQ DKRWFKGAKKFVENAAGSFSVA Sbjct: 204 VLTRTADGDEGGKHQLITATVADGKLYVCKAQR-DKRWFKGAKKFVENAAGSFSVA 258
>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 259 Score = 102 bits (255), Expect = 2e-22 Identities = 48/56 (85%), Positives = 51/56 (91%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLITATV DGKLY+CKAQAGDKRWFKGA+KFVE+ A SFSVA Sbjct: 204 VLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA 259
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 102 bits (254), Expect = 3e-22 Identities = 49/56 (87%), Positives = 51/56 (91%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLITATV GKLY+CKAQAGDKRWFKGA+KFVENAA SFSVA Sbjct: 210 VLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 265
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 102 bits (253), Expect = 3e-22 Identities = 48/56 (85%), Positives = 51/56 (91%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG H LITATV+DGKLY+CKAQAGDKRWFKGAKKFVE+AA SFS A Sbjct: 210 VLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 101 bits (252), Expect = 4e-22 Identities = 48/56 (85%), Positives = 51/56 (91%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADG+EGG HQLITATV DGKLY+CKAQAGDKRWFKGAKKFVEN A SFS+A Sbjct: 210 VLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 100 bits (250), Expect = 8e-22 Identities = 46/56 (82%), Positives = 51/56 (91%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 +L RTADG+EGG HQL+TATV DGKLY+CKAQAGDKRWFKGAKKFVEN A SFS+A Sbjct: 211 ILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 100 bits (250), Expect = 8e-22 Identities = 47/56 (83%), Positives = 50/56 (89%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQ+I ATV DGKLY+CKAQAGDKRWFKGAKKFVE+A SFSVA Sbjct: 212 VLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 100 bits (250), Expect = 8e-22 Identities = 48/56 (85%), Positives = 51/56 (91%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLI+ATV GKLY+CKAQAGDKRWFKGA+KFVENAA SFSVA Sbjct: 213 VLTRTADGDEGGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 100 bits (249), Expect = 1e-21 Identities = 48/56 (85%), Positives = 51/56 (91%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLITATV GKLY+CKAQAGDKRWFKGA+KFVE+AA SFSVA Sbjct: 208 VLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 99.4 bits (246), Expect = 2e-21 Identities = 48/56 (85%), Positives = 49/56 (87%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG HQLITATV GKLY+CKAQAGDKRWFKGA KFVE AA SFSVA Sbjct: 205 VLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 96.3 bits (238), Expect = 2e-20 Identities = 47/56 (83%), Positives = 48/56 (85%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTAD DEGG HQLITATV GKLY+CKAQAGDKRWFKGA KFVE AA SFSVA Sbjct: 162 VLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217
>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 264 Score = 96.3 bits (238), Expect = 2e-20 Identities = 44/56 (78%), Positives = 49/56 (87%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 89 VL RTADGDEGG H +I+ATV DGKLY+CKAQAGDKRWFKGAKKFVE+ SF+VA Sbjct: 209 VLTRTADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 72.4 bits (176), Expect = 3e-13 Identities = 37/56 (66%), Positives = 42/56 (75%), Gaps = 1/56 (1%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATV-ADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSV 92 +L R+ADGDEGG HQLI ATV +D KLY+ K Q GDKRWFKGAKK A SF+V Sbjct: 189 LLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244
>MTP_PIG (Q865F1) Microsomal triglyceride transfer protein large subunit| precursor Length = 894 Score = 30.4 bits (67), Expect = 1.3 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAK 128 +L R+ DGD+ QLI T+ D K+ Q G+K FKG K Sbjct: 67 LLWRSPDGDDD---QLIQITIKDVKVENVNQQRGEKSIFKGKK 106
>TRRAP_HUMAN (Q9Y4A5) Transformation/transcription domain-associated protein| (350/400 kDa PCAF-associated factor) (PAF350/400) (STAF40) (Tra1 homolog) Length = 3859 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Frame = +2 Query: 41 FPEEIPLNSP----IGHVYLCDTEGSCGVLDELLGALEPPFVSGLRLA 172 FPE++ LN+ + +VY +T EL LEP F+SGLR A Sbjct: 2407 FPEDLELNAQFLDLVNYVYRDETLSG----SELTAKLEPAFLSGLRCA 2450
>AROA_RHILO (Q98CC1) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 452 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -1 Query: 162 KPETKGGSRAPRSSSRTPQDPSVSHKYTXPIGEFNGISSGKHRV 31 KP T S+A ++R P D S+SH+ F G++SG+ R+ Sbjct: 8 KPATARKSQALSGTARVPGDKSISHRSFM----FGGLASGETRI 47
>MTP_BOVIN (P55156) Microsomal triglyceride transfer protein large subunit| precursor (Fragment) Length = 887 Score = 29.6 bits (65), Expect = 2.1 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -3 Query: 256 VLXRTADGDEGGXHQLITATVADGKLYVCKAQAGDKRWFKGAK 128 +L R+ DGD+ +QLI T+ D L Q G+K FKG K Sbjct: 60 LLWRSPDGDD---NQLIQITMKDVNLENVNQQRGEKSIFKGKK 99
>TRRAP_MOUSE (Q80YV3) Transformation/transcription domain-associated protein (Tra1| homolog) Length = 2565 Score = 28.9 bits (63), Expect = 3.6 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +2 Query: 41 FPEEIPLNSPIGHV--YLCDTEGSCGVLDELLGALEPPFVSGLRLA 172 FPE++ LN+ + Y+ E G EL LEP F+SGLR A Sbjct: 1106 FPEDLELNAQFLDLVNYVYRDEALSG--SELTAKLEPAFLSGLRCA 1149
>NTRB_BRASR (P10578) Nitrogen regulation protein ntrB (EC 2.7.13.3)| Length = 377 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Frame = +2 Query: 89 CDTEGSCGVLDELLGALEPPFV------SGLRLADVELAVGDGGG 205 C + GV ++LL L PFV SGL LA V VGD GG Sbjct: 301 CVKDNGSGVPEDLLPNLFDPFVTTKQTGSGLGLALVAKIVGDHGG 345
>TNFA_PAPSP (P33620) Tumor necrosis factor precursor (TNF-alpha) (Tumor| necrosis factor ligand superfamily member 2) (TNF-a) (Cachectin) [Contains: Tumor necrosis factor, membrane form; Tumor necrosis factor, soluble form] Length = 233 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 141 SRAPRSSSRTPQDPSVSHKYTXPIGE 64 ++A RSSSRTP D V+H P E Sbjct: 74 AQAVRSSSRTPSDKPVAHVVANPQAE 99
>TNFA_PAPAN (P59695) Tumor necrosis factor precursor (TNF-alpha) (Tumor| necrosis factor ligand superfamily member 2) (TNF-a) (Cachectin) [Contains: Tumor necrosis factor, membrane form; Tumor necrosis factor, soluble form] Length = 233 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 141 SRAPRSSSRTPQDPSVSHKYTXPIGE 64 ++A RSSSRTP D V+H P E Sbjct: 74 AQAVRSSSRTPSDKPVAHVVANPQAE 99
>TNFA_MACMU (P48094) Tumor necrosis factor precursor (TNF-alpha) (Tumor| necrosis factor ligand superfamily member 2) (TNF-a) (Cachectin) [Contains: Tumor necrosis factor, membrane form; Tumor necrosis factor, soluble form] Length = 233 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 141 SRAPRSSSRTPQDPSVSHKYTXPIGE 64 ++A RSSSRTP D V+H P E Sbjct: 74 AQAVRSSSRTPSDKPVAHVVANPQAE 99
>TNFA_MACFA (P79337) Tumor necrosis factor precursor (TNF-alpha) (Tumor| necrosis factor ligand superfamily member 2) (TNF-a) (Cachectin) [Contains: Tumor necrosis factor, membrane form; Tumor necrosis factor, soluble form] Length = 233 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 141 SRAPRSSSRTPQDPSVSHKYTXPIGE 64 ++A RSSSRTP D V+H P E Sbjct: 74 AQAVRSSSRTPSDKPVAHVVANPQAE 99
>TNFA_HUMAN (P01375) Tumor necrosis factor precursor (TNF-alpha) (Tumor| necrosis factor ligand superfamily member 2) (TNF-a) (Cachectin) [Contains: Tumor necrosis factor, membrane form; Tumor necrosis factor, soluble form] Length = 233 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 141 SRAPRSSSRTPQDPSVSHKYTXPIGE 64 ++A RSSSRTP D V+H P E Sbjct: 74 AQAVRSSSRTPSDKPVAHVVANPQAE 99
>GMA12_SCHPO (Q09174) Alpha-1,2-galactosyltransferase (EC 2.4.1.-)| Length = 375 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 156 ETKGGSRAPRSSSRTPQDPSVSHKYTXPIGEFNGISSG 43 E K G+ P RTP+D + +FNGI++G Sbjct: 215 EYKSGAGIPADGFRTPKDQDAKDVHFIISQDFNGINAG 252
>SYFB_MYCPA (Q740J0) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 828 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 119 DELLGALEPPFVSGLRLADVELAVGDGGGDELVLP 223 D L G + PP + RLA + AV GG V+P Sbjct: 424 DRLAGVIYPPGTAAKRLAQIGAAVTADGGTLTVVP 458
>LPXC_CHLCV (Q824Q4) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine| deacetylase (EC 3.5.1.-) (UDP-3-O-acyl-GlcNAc deacetylase) Length = 280 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +2 Query: 17 LESVSTRCFPEEIPLNSPIGHVY--LCDTEGSCGVLDEL 127 +++V RC EEIP+ HV+ L D G C D++ Sbjct: 89 IDNVIVRCSEEEIPIGDGSSHVFMQLIDDAGICTQNDKV 127 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,226,295 Number of Sequences: 219361 Number of extensions: 518403 Number of successful extensions: 1709 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 1674 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1707 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
