Clone Information

BLAST Search Result

Clone Name	rbaal22o21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ...	265	4e-71
2	RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a...	208	5e-54
3	RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a...	206	2e-53
4	RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ...	201	8e-52
5	RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ...	167	9e-42
6	RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a...	164	6e-41
7	RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a...	159	3e-39
8	RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a...	156	2e-38
9	RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ...	155	5e-38
10	RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ...	154	1e-37
11	RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ...	154	1e-37
12	RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a...	153	1e-37
13	RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a...	147	1e-35
14	RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a...	146	2e-35
15	RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a...	110	1e-24
16	RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a...	90	2e-18
17	RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a...	71	1e-12
18	RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase a...	64	1e-10
19	ZDH23_HUMAN (Q8IYP9) Probable palmitoyltransferase ZDHHC23 (EC 2...	32	0.80
20	CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like m...	31	1.4
21	RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase a...	31	1.4
22	TAL_STRP8 (P66961) Probable transaldolase (EC 2.2.1.2)	30	1.8
23	TAL_STRP6 (Q5XAK4) Probable transaldolase (EC 2.2.1.2)	30	1.8
24	TAL_STRP3 (P66960) Probable transaldolase (EC 2.2.1.2)	30	1.8
25	TAL_STRP1 (P66959) Probable transaldolase (EC 2.2.1.2)	30	1.8
26	S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B ...	30	1.8
27	DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleot...	30	2.3
28	DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo...	30	2.3
29	DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo...	30	2.3
30	DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo...	30	2.3
31	PTPRZ_HUMAN (P23471) Receptor-type tyrosine-protein phosphatase ...	30	2.3
32	GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 pre...	30	2.3
33	LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 p...	30	3.0
34	S20A1_XENTR (Q5BL44) Sodium-dependent phosphate transporter 1 (S...	29	3.9
35	DNL3_HUMAN (P49916) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III) (...	29	5.2
36	PBPB_BACSU (Q07868) Penicillin-binding protein 2B (PBP-2B)	29	5.2
37	RPB7_SOYBN (P46279) DNA-directed RNA polymerase II 19 kDa polype...	28	6.7
38	LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor	28	6.7
39	TAL_AQUAE (O66520) Probable transaldolase (EC 2.2.1.2)	28	8.8
40	S20AA_XENLA (Q68F35) Sodium-dependent phosphate transporter 1-A ...	28	8.8

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  265 bits (676), Expect = 4e-71
 Identities = 130/133 (97%), Positives = 131/133 (98%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV
Sbjct: 332 IDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 391

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDP 61
           QEQDNVKRVQLADTYMSQAALGDANQDA+KTGSFYGKGAQQGTLPVPEGCTDQNAKNYDP
Sbjct: 392 QEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDP 451

Query: 60  TARSDDGSXLYTF 22
           TARSDDGS LYTF
Sbjct: 452 TARSDDGSCLYTF 464

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>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  208 bits (529), Expect = 5e-54
 Identities = 102/133 (76%), Positives = 116/133 (87%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRK+V S G+E IGKRLVNSR+GP  FEQP+MT EKL+EYG+MLV
Sbjct: 342 IDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLV 401

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDP 61
            EQ+NVKRVQLA+TY+SQAALGDAN DAI  G+FYGKGAQQ  LPVPEGCTD  A+N+DP
Sbjct: 402 MEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDP 461

Query: 60  TARSDDGSXLYTF 22
           TARSDDG+ +Y F
Sbjct: 462 TARSDDGTCVYNF 474

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>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  206 bits (524), Expect = 2e-53
 Identities = 98/131 (74%), Positives = 114/131 (87%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV  DEVRKWV S G++N+GK+LVNS+DGP  FEQP+MT++KL+EYG+MLV
Sbjct: 340 IDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLV 399

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDP 61
           QEQ+NVKRVQLAD YMS AALGDAN+DAI  G+F+GK AQQ +LPV +GCTD  AKNYDP
Sbjct: 400 QEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDP 459

Query: 60  TARSDDGSXLY 28
           TARSDDGS  Y
Sbjct: 460 TARSDDGSCTY 470

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>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  201 bits (510), Expect = 8e-52
 Identities = 99/135 (73%), Positives = 112/135 (82%), Gaps = 2/135 (1%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV  DEVRKWV   G++ IGK+LVNS++GP +FEQPKMT++KLL YG MLV
Sbjct: 342 IDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLV 401

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGKGAQQ--GTLPVPEGCTDQNAKNY 67
           QEQ+NVKRVQLAD YMS+AALGDAN DAIK G+FYG  A Q  G +PVPEGCTD  A NY
Sbjct: 402 QEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNY 461

Query: 66  DPTARSDDGSXLYTF 22
           DPTARSDDGS +Y F
Sbjct: 462 DPTARSDDGSCVYKF 476

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>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  167 bits (423), Expect = 9e-42
 Identities = 79/97 (81%), Positives = 89/97 (91%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKWVG  G+ENI KRLVNSR+GP TF+QPKMT+EKL+EYGHMLV
Sbjct: 329 IDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLV 388

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGK 130
           QEQ+NVKRVQLAD Y+S+AALG AN DA+KTG+FYGK
Sbjct: 389 QEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425

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>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  164 bits (416), Expect = 6e-41
 Identities = 78/96 (81%), Positives = 89/96 (92%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKWV  TG+ENIGKRLVNSR+GP  FEQPKMT+EKL+EYG+MLV
Sbjct: 332 IDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLV 391

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYG 133
           +EQ+NVKRVQLA+ Y+S+AALGDAN DA+KTGSFYG
Sbjct: 392 KEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427

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>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  159 bits (401), Expect = 3e-39
 Identities = 74/96 (77%), Positives = 88/96 (91%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKW+   G+++IGK+LVNS++GP TFEQPKMT+EKLLEYG+MLV
Sbjct: 342 IDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLV 401

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYG 133
           QEQ+NVKRVQLAD Y+S+AALGDAN DA+ TG+FYG
Sbjct: 402 QEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437

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>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  156 bits (395), Expect = 2e-38
 Identities = 72/95 (75%), Positives = 88/95 (92%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVR+WV  TG+ENI ++LVNS++GP TFEQPK+T+EKLLEYGHMLV
Sbjct: 338 IDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLV 397

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFY 136
            EQ+NVKRVQLAD Y+++AALG+AN+DA+KTGSF+
Sbjct: 398 AEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432

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>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  155 bits (391), Expect = 5e-38
 Identities = 73/94 (77%), Positives = 86/94 (91%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKWV   G++ IGK+LVNS++GP TFEQPKMT++KLL+YG+MLV
Sbjct: 342 IDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLV 401

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSF 139
           +EQ+NVKRVQLAD YMS+AALGDANQDAIK G+F
Sbjct: 402 EEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

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>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  154 bits (388), Expect = 1e-37
 Identities = 75/95 (78%), Positives = 83/95 (87%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKWV  TGIE IG +L+NS DGP TFEQPKMT+EKLLEYG+MLV
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLV 405

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFY 136
           QEQ+NVKRVQLAD Y+ +AALGDAN DAI  GSF+
Sbjct: 406 QEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440

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>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  154 bits (388), Expect = 1e-37
 Identities = 76/94 (80%), Positives = 84/94 (89%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKWV  TGIE IG +L+NS DGP TFEQPKMTVEKLLEYG+MLV
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLV 405

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSF 139
           QEQ+NVKRVQLA+TY+ +AALGDAN DAI TG+F
Sbjct: 406 QEQENVKRVQLAETYLKEAALGDANADAINTGNF 439

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>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  153 bits (387), Expect = 1e-37
 Identities = 75/92 (81%), Positives = 84/92 (91%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKWV  TGIE IG++L+NSRDGP TFEQPKMT+EKLLEYG+MLV
Sbjct: 341 IDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLV 400

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTG 145
           QEQ+NVKRVQLA+TY+ +AALGDAN DAI TG
Sbjct: 401 QEQENVKRVQLAETYLKEAALGDANADAINTG 432

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>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  147 bits (371), Expect = 1e-35
 Identities = 67/95 (70%), Positives = 87/95 (91%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKW+   G++  GK+LVNS++GP TF+QPKM+++KLL+YG+MLV
Sbjct: 344 IDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLV 403

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFY 136
           QEQ+NVKRVQLAD Y+++AALG+AN+DAIK+GSF+
Sbjct: 404 QEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438

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>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  146 bits (369), Expect = 2e-35
 Identities = 67/95 (70%), Positives = 86/95 (90%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKW+   G++++GK+LVNS++GP TF+QPKMT++KLL Y  MLV
Sbjct: 346 IDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLV 405

Query: 240 QEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFY 136
           QEQ+NVKRVQLAD Y+++AALG+AN+DAIK+GSF+
Sbjct: 406 QEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440

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>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  110 bits (276), Expect = 1e-24
 Identities = 52/71 (73%), Positives = 61/71 (85%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DDEVRKW    G+E IG+ LVNS++ P TF+QPKMT+EKLLEYG+MLV
Sbjct: 339 IDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLV 398

Query: 240 QEQDNVKRVQL 208
            EQ+NVKRV+L
Sbjct: 399 MEQENVKRVKL 409

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>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 46/81 (56%), Positives = 59/81 (72%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFFGALRARV DD VR+W+  TG++ IG++LVN+R   V   +  M +  L++YG  LV
Sbjct: 315 IDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLV 373

Query: 240 QEQDNVKRVQLADTYMSQAAL 178
            EQ+NVKRVQLAD Y+S A L
Sbjct: 374 DEQENVKRVQLADAYLSGAEL 394

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>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 31/75 (41%), Positives = 49/75 (65%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFF ALR+R+ D+++R ++   G EN+  R+VNS +GP  F++P  T+  L+E  + +V
Sbjct: 215 IDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMV 274

Query: 240 QEQDNVKRVQLADTY 196
            EQ  ++  QL D Y
Sbjct: 275 AEQKRIETSQLVDEY 289

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>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 30/75 (40%), Positives = 47/75 (62%)
 Frame = -2

Query: 420 IDFFGALRARV*DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 241
           IDFF ALR+R+ D ++R ++   G E I  R+VNS + P  F++P  ++  L+E G++++
Sbjct: 215 IDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVL 274

Query: 240 QEQDNVKRVQLADTY 196
            EQ  V   QL D Y
Sbjct: 275 GEQQRVDNSQLVDEY 289

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>ZDH23_HUMAN (Q8IYP9) Probable palmitoyltransferase ZDHHC23 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 23) (DHHC-23)
          Length = 409

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +2

Query: 95  PSGTGKVPCCAPLP*KEPVLXASWLASPRAAWLM*VSASCT-RLTLSCSWTSMCPYSSSF 271
           P G+ K+P  +P   KE       L  P  AW   +   C  R+   C W + C   S+ 
Sbjct: 242 PKGSSKMPAGSPTKAKEDWCAKCQLVRPARAWRCRICGICVRRMDHHCVWINSCVGESNH 301

Query: 272 STVI 283
              I
Sbjct: 302 QAFI 305

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>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 21/48 (43%), Positives = 24/48 (50%)
 Frame = -1

Query: 148 WFLLR*RSTARYFARAGRLHRPKCQELRPNGKERRRQXPLHLLSMPLL 5
           +FL R RS  R  AR     R K Q LRPNG E+RR   +     P L
Sbjct: 139 FFLARDRSAKRERAR-----RRKGQTLRPNGNEQRRNDKMRCSGHPHL 181

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>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 315 RDGPVTFEQPKMTVEK 268
           R+GP TFEQP MT+EK
Sbjct: 17  REGPPTFEQPAMTIEK 32

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>TAL_STRP8 (P66961) Probable transaldolase (EC 2.2.1.2)|
          Length = 214

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = -2

Query: 345 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDAN 166
           E + K + +  DGP++ E   +T + ++E    + +  DNV  V++  T     A    +
Sbjct: 40  ETVIKEICDIVDGPISAEVTGLTADAMVEEARSIAKWHDNVV-VKIPMTTEGLKATNILS 98

Query: 165 QDAIKTGSFYGKGAQQGTLPVPEGCT 88
           ++ IKT         QG + +  G T
Sbjct: 99  KEGIKTNVTLIFTVSQGLMAMKAGAT 124

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>TAL_STRP6 (Q5XAK4) Probable transaldolase (EC 2.2.1.2)|
          Length = 214

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = -2

Query: 345 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDAN 166
           E + K + +  DGP++ E   +T + ++E    + +  DNV  V++  T     A    +
Sbjct: 40  ETVIKEICDIVDGPISAEVTGLTADAMVEEARSIAKWHDNVV-VKIPMTTEGLKATNILS 98

Query: 165 QDAIKTGSFYGKGAQQGTLPVPEGCT 88
           ++ IKT         QG + +  G T
Sbjct: 99  KEGIKTNVTLIFTVSQGLMAMKAGAT 124

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>TAL_STRP3 (P66960) Probable transaldolase (EC 2.2.1.2)|
          Length = 214

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = -2

Query: 345 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDAN 166
           E + K + +  DGP++ E   +T + ++E    + +  DNV  V++  T     A    +
Sbjct: 40  ETVIKEICDIVDGPISAEVTGLTADAMVEEARSIAKWHDNVV-VKIPMTTEGLKATNILS 98

Query: 165 QDAIKTGSFYGKGAQQGTLPVPEGCT 88
           ++ IKT         QG + +  G T
Sbjct: 99  KEGIKTNVTLIFTVSQGLMAMKAGAT 124

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>TAL_STRP1 (P66959) Probable transaldolase (EC 2.2.1.2)|
          Length = 214

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = -2

Query: 345 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDAN 166
           E + K + +  DGP++ E   +T + ++E    + +  DNV  V++  T     A    +
Sbjct: 40  ETVIKEICDIVDGPISAEVTGLTADAMVEEARSIAKWHDNVV-VKIPMTTEGLKATNILS 98

Query: 165 QDAIKTGSFYGKGAQQGTLPVPEGCT 88
           ++ IKT         QG + +  G T
Sbjct: 99  KEGIKTNVTLIFTVSQGLMAMKAGAT 124

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>S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B (Solute carrier|
           family 20 member 1-B)
          Length = 685

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 25  GVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLDXILVSITQSCLAHV 198
           G++   ++AP  W++VLG ++     F  G + +  SF   GT++   +V++ Q+C+   
Sbjct: 15  GIQDVHIMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACIL-- 69

Query: 199 GVSKLHTLDIVLL 237
             S   T+  VLL
Sbjct: 70  -ASIFETVGSVLL 81

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>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 243 VQEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGKGAQQGTLPV-PEGCTDQNA 76
           V E    + +++   Y+++ ++ D+  D +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442

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>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 243 VQEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGKGAQQGTLPV-PEGCTDQNA 76
           V E    + +++   Y+++ ++ D+  D +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442

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>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 243 VQEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGKGAQQGTLPV-PEGCTDQNA 76
           V E    + +++   Y+++ ++ D+  D +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442

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>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 243 VQEQDNVKRVQLADTYMSQAALGDANQDAIKTGSFYGKGAQQGTLPV-PEGCTDQNA 76
           V E    + +++   Y+++ ++ D+  D +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442

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>PTPRZ_HUMAN (P23471) Receptor-type tyrosine-protein phosphatase zeta precursor|
           (EC 3.1.3.48) (R-PTP-zeta)
          Length = 2314

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
 Frame = -2

Query: 381 DEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQE---QDNVKRVQ 211
           +E+ + V S+  EN+     N     VT+E+P++  + ++E   +L Q+   +D  K   
Sbjct: 304 EEIHEAVCSSEPENVQADPENYTSLLVTWERPRVVYDTMIEKFAVLYQQLDGEDQTKHEF 363

Query: 210 LADTYMSQAALGD---ANQD------AIKTGSFYGKGAQQGTLPVP 100
           L D Y    A+ +    N        AI T   YGK + Q  + +P
Sbjct: 364 LTDGYQDLGAILNNLLPNMSYVLQIVAICTNGLYGKYSDQLIVDMP 409

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>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 200 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 304
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

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>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -2

Query: 366 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 259
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257

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>S20A1_XENTR (Q5BL44) Sodium-dependent phosphate transporter 1 (Solute carrier|
           family 20 member 1)
          Length = 685

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +1

Query: 7   KVACLKGVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLDXILVSITQ 180
           +V    G++   ++ P  W++VLG ++     F  G + +  SF   GT++   +V++ Q
Sbjct: 9   EVTSALGIENVKIMEPFLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQ 65

Query: 181 SCLAHVGVSKLHTLDIVLL 237
           +C+     S   T+  VLL
Sbjct: 66  ACIL---ASIFETVGSVLL 81

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>DNL3_HUMAN (P49916) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III)|
           (Polydeoxyribonucleotide synthase [ATP] 3)
          Length = 922

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 198 YMSQAALGDANQDAIKTGSFYGKGAQQGTLPV-PEGCTDQNAKNY 67
           Y+++ A+ D   D +  G+FYG+G++ G + +   GC D  ++ +
Sbjct: 593 YLNEGAMADT-ADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKW 636

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>PBPB_BACSU (Q07868) Penicillin-binding protein 2B (PBP-2B)|
          Length = 716

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 384 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPK 283
           D+E  +  G+ G+E +  + +  RDG VT+E  K
Sbjct: 186 DEETNEISGAMGLEKVLDKYLKERDGYVTYESDK 219

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>RPB7_SOYBN (P46279) DNA-directed RNA polymerase II 19 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 176

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -2

Query: 363 VGSTGIENIGKRLVNSRDGPVTF 295
           V  TGIENIGK L+    G VTF
Sbjct: 46  VAVTGIENIGKGLIRDGTGFVTF 68

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>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 39   CRRRSLPLGRSSWHFGRCNLP 101
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134

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>TAL_AQUAE (O66520) Probable transaldolase (EC 2.2.1.2)|
          Length = 217

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 363 VGSTG--IENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNV 223
           +  TG   + + K ++   DGPV+ E   +  E ++  G ML +  +NV
Sbjct: 32  ISKTGRPFKEVVKEILELVDGPVSLETVSLDAEGMIREGRMLAELGENV 80

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>S20AA_XENLA (Q68F35) Sodium-dependent phosphate transporter 1-A (Solute carrier|
           family 20 member 1-A)
          Length = 685

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 43  VVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLDXILVSITQSCLAHVGVSKLH 216
           ++AP  W++VLG ++     F  G + +  SF   GT++   +V++ Q+C+     S   
Sbjct: 21  IMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACIL---ASIFE 74

Query: 217 TLDIVLL 237
           T+  VLL
Sbjct: 75  TVGSVLL 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,050,727
Number of Sequences: 219361
Number of extensions: 1007510
Number of successful extensions: 3387
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3385
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result