ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal22o11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L28094.1|BLYCDNA Barley mRNA sequence 632 e-178
2emb|Z50799.1|HVHHMG12 H.vulgare mRNA for HMG1/2-like protein 585 e-164
3emb|Z11540.1|TAHMGW T.aestivum mRNA for high mobility group prot... 218 1e-53
4gb|AY262827.1| Oryza sativa (indica cultivar-group) HMGB1 gene, ... 52 0.001
5gb|DQ083221.1| Oryza sativa (indica cultivar-group) clone 5B2A67... 52 0.001
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
7gb|AF541859.1| Oryza sativa (indica cultivar-group) HMG1 protein... 52 0.001
8dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
9dbj|AK068898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
10dbj|AK062226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
11gb|AF093632.1|AF093632 Oryza sativa high mobility group protein ... 52 0.001
12gb|AF531431.1| Zea mays nucleosome/chromatin assembly factor gro... 50 0.005
13emb|X66077.1|ZMMNB1B Z.mays MNB1b mRNA for DNA-binding protein 50 0.005
14emb|X58282.1|ZMHMGPMR Maize mRNA for a high mobility group protein 50 0.005
15emb|AJ131373.1|ZMA131373 Zea mays hmga gene, exons 1-7 50 0.005
16gb|AY103575.1| Zea mays PCO080122 mRNA sequence 50 0.005
17ref|XM_582943.2| PREDICTED: Bos taurus similar to malin (LOC5388... 44 0.33
18gb|AC022919.8| Homo sapiens chromosome 18, clone RP11-46D1, comp... 44 0.33
19gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, co... 44 0.33
20gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosom... 42 1.3
21ref|NM_025725.2| Mus musculus coiled-coil domain containing 96 (... 42 1.3
22gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, com... 42 1.3
23gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosom... 42 1.3
24gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete s... 42 1.3
25emb|X64461.1|DMCALRET D.melanogaster gene for calreticulin 42 1.3
26tpg|BK003310.1| TPA: TPA_inf: Drosophila melanogaster HDC00773 (... 42 1.3
27ref|NM_079569.3| Drosophila melanogaster Calreticulin CG9429-RA ... 42 1.3
28gb|AC008099.5| Drosophila melanogaster, chromosome 2L, region 25... 42 1.3
29dbj|AK015646.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.3
30dbj|AK014878.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.3
31dbj|AK030023.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.3
32gb|AC009350.4|AC009350 Drosophila melanogaster, chromosome 3R, r... 42 1.3
33gb|AC008315.9|AC008315 Drosophila melanogaster, chromosome 3R, r... 42 1.3
34gb|AF159366.1|AF159366 Ajellomyces capsulatus chitinase (CTS1) g... 42 1.3
35gb|AE003683.3| Drosophila melanogaster chromosome 3R, section 21... 42 1.3
36gb|AE003575.5| Drosophila melanogaster chromosome 2L, section 16... 42 1.3
37emb|BX284111.7| Mouse DNA sequence from clone RP23-217B8 on chro... 42 1.3
38gb|BT001670.1| Drosophila melanogaster RE50082 full insert cDNA 42 1.3
39gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosom... 42 1.3
40dbj|AB000718.1| Drosophila melanogaster mRNA for calreticulin, c... 42 1.3
41ref|XM_516145.1| PREDICTED: Pan troglodytes similar to Nucleolin... 40 5.1
42ref|NM_005381.2| Homo sapiens nucleolin (NCL), mRNA 40 5.1
43ref|XM_659097.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.1
44ref|XM_454857.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E20119g ... 40 5.1
45ref|XM_757300.1| Ustilago maydis 521 hypothetical protein (UM062... 40 5.1
46emb|AL158824.11| Human DNA sequence from clone RP11-165N19 on ch... 40 5.1
47gb|AC026877.15| Homo sapiens 3 BAC RP11-550F7 (Roswell Park Canc... 40 5.1
48emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 5.1
49emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 5.1
50gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell... 40 5.1
51dbj|AK128584.1| Homo sapiens cDNA FLJ46743 fis, clone TRACH30217... 40 5.1
52dbj|AK122805.1| Homo sapiens cDNA FLJ16383 fis, clone TLIVE20070... 40 5.1
53dbj|AK095897.1| Homo sapiens cDNA FLJ38578 fis, clone HCHON20076... 40 5.1
54dbj|AK091742.1| Homo sapiens cDNA FLJ34423 fis, clone HHDPC20081... 40 5.1
55dbj|AK001314.1| Homo sapiens cDNA FLJ10452 fis, clone NT2RP10009... 40 5.1
56ref|NM_132012.1| Drosophila melanogaster CG15776-RA (CG15776), mRNA 40 5.1
57gb|AC116660.1| Drosophila melanogaster X BAC RP98-27C7 (Roswell ... 40 5.1
58gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.1
59ref|XM_681601.1| PREDICTED: Danio rerio similar to fibroblast gr... 40 5.1
60dbj|AB169897.1| Macaca fascicularis brain cDNA, clone: QtrA-1025... 40 5.1
61dbj|AB168220.1| Macaca fascicularis testis cDNA clone: QtsA-1060... 40 5.1
62gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.1
63gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome ... 40 5.1
64gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosom... 40 5.1
65gb|AC017104.8| Homo sapiens BAC clone RP11-562I5 from 2, complet... 40 5.1
66dbj|AK000250.1| Homo sapiens cDNA FLJ20243 fis, clone COLF6418, ... 40 5.1
67dbj|AK000221.1| Homo sapiens cDNA FLJ20214 fis, clone COLF2014, ... 40 5.1
68ref|XM_314238.1| Anopheles gambiae str. PEST ENSANGP00000014447 ... 40 5.1
69emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.1
70gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 ... 40 5.1
71emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in... 40 5.1
72gb|M60858.1|HUMNUCLEO Human nucleolin gene, complete cds 40 5.1
73dbj|AB055706.1| Rhodococcus sp. RHA1 genes for benzoate 1,2-diox... 40 5.1 
>gb|L28094.1|BLYCDNA Barley mRNA sequence
          Length = 942

 Score =  632 bits (319), Expect = e-178
 Identities = 364/382 (95%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaccatctaggtaggtacaggcaggggcacacccgcggcggaggacatacaccctaacac 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 864 gaccatctaggtaggtacaggcaggggcacaccagcggcggaggacatacaccctaacac 805

                                                                       
Query: 61  cgcaaggagcaccccgccggcgggggcgccaacagggagcgctatccgttatagcangac 120
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 804 cgcaaggagcaccccgccggcgggg-cgccaacagggagcgctatccgttatagcaggac 746

                                                                       
Query: 121 ggatggacggacgacatgaaaaaggtaaaacaacatgacggtgtgaagtgaaacttggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggatggacggacgacatgaaaaaggtaaaacaacatgacggtgtgaagtgaaacttggga 686

                                                                       
Query: 181 taattgtnggggagatggataggctccttatgacaaccaccacccacagctcaggggcct 240
           ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taattctagtggagatggataggctccttatgacaaccaccacccacagctcaggggcct 626

                                                                       
Query: 241 cgcgcagcagctcccgccttgtccgccggagcaaagatgnttcttctttactcgtcntca 300
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 625 cgcgcagcagctcccgccttgtccgccggagcaaagatgcttcttctttactcgtcgtca 566

                                                                       
Query: 301 tcctcgtcctcatcgntaccctcatcgtcatcntcntnattgatctccnacttgnacttg 360
           ||||||||||||||| |||||||||||||||| || | |||||||||| ||||| |||||
Sbjct: 565 tcctcgtcctcatcgctaccctcatcgtcatcgtcgtcattgatctccgacttggacttg 506

                                 
Query: 361 tcnnattccttctnatcttcct 382
           ||  |||||| || ||||||||
Sbjct: 505 tcggattcctcctcatcttcct 484
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>emb|Z50799.1|HVHHMG12 H.vulgare mRNA for HMG1/2-like protein
          Length = 974

 Score =  585 bits (295), Expect = e-164
 Identities = 357/382 (93%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaccatctaggtaggtacaggcaggggcacacccgcggcggaggacatacaccctaacac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 858 gaccatctaggtaggtacaggcaggggcacacccgcggcggaggacatacgccctaacac 799

                                                                       
Query: 61  cgcaaggagcaccccgccggcgggggcgccaacagggagcgctatccgttatagcangac 120
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct: 798 cgcaaggagcaccccgccggcgggggggccaacagggagcgctatccgttattgcaggac 739

                                                                       
Query: 121 ggatggacggacgacatgaaaaaggtaaaacaacatgacggtgtgaagtgaaacttggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggatggacggacgacatgaaaaaggtaaaacaacatgacggtgtgaagtgaaacttggga 679

                                                                       
Query: 181 taattgtnggggagatggataggctccttatgacaaccaccacccacagctcaggggcct 240
           ||||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 678 taattctagtggagatggataggctccttatgacaaccaccacccacagttcaggggcct 619

                                                                       
Query: 241 cgcgcagcagctcccgccttgtccgccggagcaaagatgnttcttctttactcgtcntca 300
           ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |  ||
Sbjct: 618 cgcgcagaagctcccgccttgtccgccggagcaaagatgcttcttcttcactcggcggca 559

                                                                       
Query: 301 tcctcgtcctcatcgntaccctcatcgtcatcntcntnattgatctccnacttgnacttg 360
           |||||| |||||||| |||||||||||||||| || | |||||||||| ||||| |||||
Sbjct: 558 tcctcggcctcatcgctaccctcatcgtcatcgtcgtcattgatctccgacttggacttg 499

                                 
Query: 361 tcnnattccttctnatcttcct 382
           ||  |||||| || ||||||||
Sbjct: 498 tcggattcctcctcatcttcct 477
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>emb|Z11540.1|TAHMGW T.aestivum mRNA for high mobility group protein (HMGW)
          Length = 923

 Score =  218 bits (110), Expect = 1e-53
 Identities = 221/261 (84%), Gaps = 12/261 (4%)
 Strand = Plus / Minus

                                                                       
Query: 133 gacatgaaaaaggtaaaacaacatgacggtgtgaagtgaaacttgggataattgtngggg 192
           |||| ||||||||||||||||||| ||| |||||||||||||||||||||||| | | ||
Sbjct: 727 gacaggaaaaaggtaaaacaacatcacgatgtgaagtgaaacttgggataattctagtgg 668

                                                                       
Query: 193 agatggataggctccttatgacaaccaccacccacagctcagg---ggcctcgcgcagca 249
           |||||||||||||||||||||| |||||| | |||||||||||   |  ||||| |||||
Sbjct: 667 agatggataggctccttatgac-accaccgcacacagctcaggtccgttctcgcacagca 609

                                                                       
Query: 250 gctcccgccttgtccgccggagca--------aagatgnttcttctttactcgtcntcat 301
           ||||||| ||||||||||||||||        ||||||  ||||||| ||||||| || |
Sbjct: 608 gctcccgacttgtccgccggagcagccttgacaagatgcgtcttcttcactcgtcatcgt 549

                                                                       
Query: 302 cctcgtcctcatcgntaccctcatcgtcatcntcntnattgatctccnacttgnacttgt 361
           |||||||||||||| | |||||||||||||| || | |||||||||| ||||| ||||||
Sbjct: 548 cctcgtcctcatcgctgccctcatcgtcatcgtcgtcattgatctccgacttggacttgt 489

                                
Query: 362 cnnattccttctnatcttcct 382
           |  |||||| || ||||||||
Sbjct: 488 cagattcctcctcatcttcct 468



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/110 (88%), Gaps = 4/110 (3%)
 Strand = Plus / Minus

                                                                       
Query: 12  taggtacaggcaggggcacacccgcggcggaggacatacaccctaacaccgcaaggagca 71
           |||||||| |||||||||| |||||||  |||||||||||||||  |||| | ||| |||
Sbjct: 837 taggtacaagcaggggcac-cccgcggaagaggacatacaccctc-caccactagg-gca 781

                                                             
Query: 72  ccccg-ccggcgggggcgccaacagggagcgctatccgttatagcangac 120
            |||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 780 tcccggccggcggcggcgccaacagggagcgctatccgttatagcaggac 731
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>gb|AY262827.1| Oryza sativa (indica cultivar-group) HMGB1 gene, complete cds
          Length = 3659

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 85   ggcgccaacagggagcgctatccgttatag 114
            |||||||||| |||||||||||||||||||
Sbjct: 3220 ggcgccaacaaggagcgctatccgttatag 3191
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>gb|DQ083221.1| Oryza sativa (indica cultivar-group) clone 5B2A67 mRNA sequence
          Length = 395

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 85  ggcgccaacagggagcgctatccgttatag 114
           |||||||||| |||||||||||||||||||
Sbjct: 337 ggcgccaacaaggagcgctatccgttatag 308
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 85       ggcgccaacagggagcgctatccgttatag 114
                |||||||||| |||||||||||||||||||
Sbjct: 30479094 ggcgccaacaaggagcgctatccgttatag 30479065
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>gb|AF541859.1| Oryza sativa (indica cultivar-group) HMG1 protein (HMG1) mRNA,
           complete cds
          Length = 918

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 85  ggcgccaacagggagcgctatccgttatag 114
           |||||||||| |||||||||||||||||||
Sbjct: 764 ggcgccaacaaggagcgctatccgttatag 735
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>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017G10
          Length = 166700

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                            
Query: 85     ggcgccaacagggagcgctatccgttatag 114
              |||||||||| |||||||||||||||||||
Sbjct: 116455 ggcgccaacaaggagcgctatccgttatag 116426
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>dbj|AK068898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170E23, full
           insert sequence
          Length = 998

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 85  ggcgccaacagggagcgctatccgttatag 114
           |||||||||| |||||||||||||||||||
Sbjct: 873 ggcgccaacaaggagcgctatccgttatag 844
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>dbj|AK062226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C12, full
           insert sequence
          Length = 913

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 85  ggcgccaacagggagcgctatccgttatag 114
           |||||||||| |||||||||||||||||||
Sbjct: 788 ggcgccaacaaggagcgctatccgttatag 759
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>gb|AF093632.1|AF093632 Oryza sativa high mobility group protein (HMG) mRNA, complete cds
          Length = 869

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 85  ggcgccaacagggagcgctatccgttatag 114
           |||||||||| |||||||||||||||||||
Sbjct: 715 ggcgccaacaaggagcgctatccgttatag 686
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>gb|AF531431.1| Zea mays nucleosome/chromatin assembly factor group D protein
           (nfd103) mRNA, complete cds
          Length = 887

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 85  ggcgccaacagggagcgctatccgttatagcangac 120
           |||||||||  ||||||||||||||||||||| |||
Sbjct: 763 ggcgccaacgaggagcgctatccgttatagcacgac 728
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>emb|X66077.1|ZMMNB1B Z.mays MNB1b mRNA for DNA-binding protein
          Length = 918

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 85  ggcgccaacagggagcgctatccgttatagcangac 120
           |||||||||  ||||||||||||||||||||| |||
Sbjct: 692 ggcgccaacgaggagcgctatccgttatagcacgac 657
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>emb|X58282.1|ZMHMGPMR Maize mRNA for a high mobility group protein
          Length = 885

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 85  ggcgccaacagggagcgctatccgttatagcangac 120
           |||||||||  ||||||||||||||||||||| |||
Sbjct: 696 ggcgccaacgaggagcgctatccgttatagcacgac 661
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>emb|AJ131373.1|ZMA131373 Zea mays hmga gene, exons 1-7
          Length = 2133

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 85   ggcgccaacagggagcgctatccgttatagcangac 120
            |||||||||  ||||||||||||||||||||| |||
Sbjct: 1563 ggcgccaacgaggagcgctatccgttatagcacgac 1528
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>gb|AY103575.1| Zea mays PCO080122 mRNA sequence
          Length = 1153

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 85  ggcgccaacagggagcgctatccgttatagcangac 120
           |||||||||  ||||||||||||||||||||| |||
Sbjct: 884 ggcgccaacgaggagcgctatccgttatagcacgac 849
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>ref|XM_582943.2| PREDICTED: Bos taurus similar to malin (LOC538814), mRNA
          Length = 1185

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 236 ggcctcgcgcagcagctcccgc 257
           ||||||||||||||||||||||
Sbjct: 57  ggcctcgcgcagcagctcccgc 36
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>gb|AC022919.8| Homo sapiens chromosome 18, clone RP11-46D1, complete sequence
          Length = 159749

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 50    caccctaacaccgcaaggagca 71
             ||||||||||||||||||||||
Sbjct: 21603 caccctaacaccgcaaggagca 21624
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>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence
          Length = 224670

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    caccctaacaccgcaaggagca 71
             ||||||||||||||||||||||
Sbjct: 46057 caccctaacaccgcaaggagca 46036
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>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence
          Length = 198336

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ctcgtcntcatcctcgtcctcatc 314
             |||||| |||||||||||||||||
Sbjct: 56443 ctcgtcctcatcctcgtcctcatc 56420
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>ref|NM_025725.2| Mus musculus coiled-coil domain containing 96 (Ccdc96), mRNA
          Length = 3584

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 291 ctcgtcntcatcctcgtcctcatc 314
           |||||| |||||||||||||||||
Sbjct: 460 ctcgtcctcatcctcgtcctcatc 437
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>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence
          Length = 230184

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   ctcgtcntcatcctcgtcctcatc 314
             |||||| |||||||||||||||||
Sbjct: 63748 ctcgtcctcatcctcgtcctcatc 63771
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>gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosome 5, complete sequence
          Length = 170182

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ctcgtcntcatcctcgtcctcatc 314
             |||||| |||||||||||||||||
Sbjct: 42772 ctcgtcctcatcctcgtcctcatc 42749
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>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence
          Length = 126187

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 292   tcgtcntcatcctcgtcctcatcg 315
             ||||| ||||||||||||||||||
Sbjct: 35681 tcgtcatcatcctcgtcctcatcg 35658
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>emb|X64461.1|DMCALRET D.melanogaster gene for calreticulin
          Length = 2654

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 292  tcgtcntcatcctcgtcctcatcg 315
            ||||| ||||||||||||||||||
Sbjct: 2275 tcgtcatcatcctcgtcctcatcg 2252
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>tpg|BK003310.1| TPA: TPA_inf: Drosophila melanogaster HDC00773 (HDC00773) gene,
           complete cds
          Length = 844

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 291 ctcgtcntcatcctcgtcctcatc 314
           |||||| |||||||||||||||||
Sbjct: 31  ctcgtcctcatcctcgtcctcatc 54



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 291 ctcgtcntcatcctcgtcctcatc 314
           |||||| |||||||||||||||||
Sbjct: 19  ctcgtcctcatcctcgtcctcatc 42
to top
>ref|NM_079569.3| Drosophila melanogaster Calreticulin CG9429-RA (Crc), mRNA
          Length = 1467

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 292  tcgtcntcatcctcgtcctcatcg 315
            ||||| ||||||||||||||||||
Sbjct: 1280 tcgtcatcatcctcgtcctcatcg 1257
to top
>gb|AC008099.5| Drosophila melanogaster, chromosome 2L, region 25A-25A, BAC clone
             BACR37J18, complete sequence
          Length = 199916

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ctcgtcntcatcctcgtcctcatc 314
             |||||| |||||||||||||||||
Sbjct: 68842 ctcgtcctcatcctcgtcctcatc 68819



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   ctcgtcntcatcctcgtcctcatc 314
             |||||| |||||||||||||||||
Sbjct: 68830 ctcgtcctcatcctcgtcctcatc 68807
to top
>dbj|AK015646.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930488J20 product:RIKEN cDNA 4921513E08
           gene, full insert sequence
          Length = 2030

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 291 ctcgtcntcatcctcgtcctcatc 314
           |||||| |||||||||||||||||
Sbjct: 458 ctcgtcctcatcctcgtcctcatc 435
to top
>dbj|AK014878.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921513E08 product:hypothetical Aspartic
           acid-rich region/Glutamic acid-rich region containing
           protein, full insert sequence
          Length = 2210

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 291 ctcgtcntcatcctcgtcctcatc 314
           |||||| |||||||||||||||||
Sbjct: 458 ctcgtcctcatcctcgtcctcatc 435
to top
>dbj|AK030023.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932416C18 product:hypothetical Aspartic
           acid-rich region/Glutamic acid-rich region containing
           protein, full insert sequence
          Length = 3584

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 291 ctcgtcntcatcctcgtcctcatc 314
           |||||| |||||||||||||||||
Sbjct: 460 ctcgtcctcatcctcgtcctcatc 437
to top
>gb|AC009350.4|AC009350 Drosophila melanogaster, chromosome 3R, region 85D-85E, BAC clone
              BACR19N07, complete sequence
          Length = 176933

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 292    tcgtcntcatcctcgtcctcatcg 315
              ||||| ||||||||||||||||||
Sbjct: 137554 tcgtcatcatcctcgtcctcatcg 137577
to top
>gb|AC008315.9|AC008315 Drosophila melanogaster, chromosome 3R, region 85E-85E, BAC clone
             BACR30F01, complete sequence
          Length = 177028

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 292   tcgtcntcatcctcgtcctcatcg 315
             ||||| ||||||||||||||||||
Sbjct: 10863 tcgtcatcatcctcgtcctcatcg 10886
to top
>gb|AF159366.1|AF159366 Ajellomyces capsulatus chitinase (CTS1) gene, complete cds
          Length = 3046

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 291 ctcgtcntcatcctcgtcctcatc 314
           |||||| |||||||||||||||||
Sbjct: 10  ctcgtcctcatcctcgtcctcatc 33
to top
>gb|AE003683.3| Drosophila melanogaster chromosome 3R, section 21 of 118 of the complete
              sequence
          Length = 243348

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 292    tcgtcntcatcctcgtcctcatcg 315
              ||||| ||||||||||||||||||
Sbjct: 166721 tcgtcatcatcctcgtcctcatcg 166744
to top
>gb|AE003575.5| Drosophila melanogaster chromosome 2L, section 16 of 83 of the complete
             sequence
          Length = 330399

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   ctcgtcntcatcctcgtcctcatc 314
             |||||| |||||||||||||||||
Sbjct: 85232 ctcgtcctcatcctcgtcctcatc 85255



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   ctcgtcntcatcctcgtcctcatc 314
             |||||| |||||||||||||||||
Sbjct: 85220 ctcgtcctcatcctcgtcctcatc 85243
to top
>emb|BX284111.7| Mouse DNA sequence from clone RP23-217B8 on chromosome X, complete
              sequence
          Length = 223318

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 291    ctcgtcntcatcctcgtcctcatc 314
              |||||| |||||||||||||||||
Sbjct: 115431 ctcgtcctcatcctcgtcctcatc 115408
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>gb|BT001670.1| Drosophila melanogaster RE50082 full insert cDNA
          Length = 1438

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 292  tcgtcntcatcctcgtcctcatcg 315
            ||||| ||||||||||||||||||
Sbjct: 1238 tcgtcatcatcctcgtcctcatcg 1215
to top
>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete sequence
          Length = 168439

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 291    ctcgtcntcatcctcgtcctcatc 314
              |||||| |||||||||||||||||
Sbjct: 144531 ctcgtcctcatcctcgtcctcatc 144508
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>dbj|AB000718.1| Drosophila melanogaster mRNA for calreticulin, complete cds
          Length = 1438

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 292  tcgtcntcatcctcgtcctcatcg 315
            ||||| ||||||||||||||||||
Sbjct: 1243 tcgtcatcatcctcgtcctcatcg 1220
to top
>ref|XM_516145.1| PREDICTED: Pan troglodytes similar to Nucleolin (Protein C23)
            (LOC460006), mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 292  tcgtcntcatcctcgtcctcatc 314
            ||||| |||||||||||||||||
Sbjct: 1583 tcgtcgtcatcctcgtcctcatc 1561
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>ref|NM_005381.2| Homo sapiens nucleolin (NCL), mRNA
          Length = 2732

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 887 tcgtcgtcatcctcgtcctcatc 865
to top
>ref|XM_659097.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6585.2), mRNA
          Length = 2871

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 812 tcgtcttcatcctcgtcctcatc 790
to top
>ref|XM_454857.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E20119g predicted mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 206 tcgtcttcatcctcgtcctcatc 184
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>ref|XM_757300.1| Ustilago maydis 521 hypothetical protein (UM06246.1) partial mRNA
          Length = 4662

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 157 tcgtcctcatcctcgtcctcatc 179
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>emb|AL158824.11| Human DNA sequence from clone RP11-165N19 on chromosome 9 Contains a
             ribosomal protein L29 (RPL29) pseudogene, the 3' end of
             the gene for regulator of differentiation 1 (ROD1), a
             novel gene containing DKFZP761E1824, a heat shock 10 KDa
             protein 1 (HSPE1) pseudogene and a CpG island, complete
             sequence
          Length = 147345

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   atgaaaaaggtaaaacaaca 155
             ||||||||||||||||||||
Sbjct: 69423 atgaaaaaggtaaaacaaca 69442
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>gb|AC026877.15| Homo sapiens 3 BAC RP11-550F7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 198824

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   catgaaaaaggtaaaacaac 154
             ||||||||||||||||||||
Sbjct: 21521 catgaaaaaggtaaaacaac 21502
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 292     tcgtcntcatcctcgtcctcatc 314
               ||||| |||||||||||||||||
Sbjct: 1783469 tcgtcttcatcctcgtcctcatc 1783447
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    cctcgcgcagcagctcccgc 257
              ||||||||||||||||||||
Sbjct: 281294 cctcgcgcagcagctcccgc 281275
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>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163764

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 303    ctcgtcctcatcgntaccctcatcgtc 329
              |||||||||||||  ||||||||||||
Sbjct: 109126 ctcgtcctcatcgtcaccctcatcgtc 109152
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>dbj|AK128584.1| Homo sapiens cDNA FLJ46743 fis, clone TRACH3021778, moderately
            similar to Nucleolin
          Length = 3967

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 292  tcgtcntcatcctcgtcctcatc 314
            ||||| |||||||||||||||||
Sbjct: 1686 tcgtcgtcatcctcgtcctcatc 1664
to top
>dbj|AK122805.1| Homo sapiens cDNA FLJ16383 fis, clone TLIVE2007016, highly  similar
           to NUCLEOLIN
          Length = 2655

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 829 tcgtcgtcatcctcgtcctcatc 807
to top
>dbj|AK095897.1| Homo sapiens cDNA FLJ38578 fis, clone HCHON2007674, highly similar
           to NUCLEOLIN
          Length = 2560

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 734 tcgtcgtcatcctcgtcctcatc 712
to top
>dbj|AK091742.1| Homo sapiens cDNA FLJ34423 fis, clone HHDPC2008123, highly similar
           to NUCLEOLIN
          Length = 2637

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 808 tcgtcgtcatcctcgtcctcatc 786
to top
>dbj|AK001314.1| Homo sapiens cDNA FLJ10452 fis, clone NT2RP1000966, highly similar
           to NUCLEOLIN
          Length = 1893

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 279 tcgtcgtcatcctcgtcctcatc 257
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>ref|NM_132012.1| Drosophila melanogaster CG15776-RA (CG15776), mRNA
          Length = 1872

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 303 ctcgtcctcatcgntaccctcatcgtc 329
           |||||||||||||  ||||||||||||
Sbjct: 330 ctcgtcctcatcgtcaccctcatcgtc 304
to top
>gb|AC116660.1| Drosophila melanogaster X BAC RP98-27C7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 151605

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 303    ctcgtcctcatcgntaccctcatcgtc 329
              |||||||||||||  ||||||||||||
Sbjct: 143763 ctcgtcctcatcgtcaccctcatcgtc 143737
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 234     ggggcctcgcgcagcagctcccgc 257
               |||||| |||||||||||||||||
Sbjct: 1676648 ggggccccgcgcagcagctcccgc 1676671
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>ref|XM_681601.1| PREDICTED: Danio rerio similar to fibroblast growth factor receptor
            substrate 2 (LOC558398), mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 292  tcgtcntcatcctcgtcctcatc 314
            ||||| |||||||||||||||||
Sbjct: 1163 tcgtcctcatcctcgtcctcatc 1141
to top
>dbj|AB169897.1| Macaca fascicularis brain cDNA, clone: QtrA-10252, similar to human
           nucleolin (NCL), mRNA, RefSeq: NM_005381.1
          Length = 2757

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 892 tcgtcatcatcctcgtcctcatc 870
to top
>dbj|AB168220.1| Macaca fascicularis testis cDNA clone: QtsA-10605, similar to human
           nucleolin (NCL), mRNA, RefSeq: NM_005381.1
          Length = 2737

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 890 tcgtcatcatcctcgtcctcatc 868
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 292     tcgtcntcatcctcgtcctcatc 314
               ||||| |||||||||||||||||
Sbjct: 1326959 tcgtcctcatcctcgtcctcatc 1326937
to top
>gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome 7, complete sequence
          Length = 242359

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   accaccacccacagctcagg 235
             ||||||||||||||||||||
Sbjct: 54512 accaccacccacagctcagg 54531
to top
>gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosome 7, complete sequence
          Length = 178072

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   accaccacccacagctcagg 235
             ||||||||||||||||||||
Sbjct: 71170 accaccacccacagctcagg 71189
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>gb|AC017104.8| Homo sapiens BAC clone RP11-562I5 from 2, complete sequence
          Length = 168880

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 292   tcgtcntcatcctcgtcctcatc 314
             ||||| |||||||||||||||||
Sbjct: 69261 tcgtcgtcatcctcgtcctcatc 69283
to top
>dbj|AK000250.1| Homo sapiens cDNA FLJ20243 fis, clone COLF6418, highly similar to
           NUCL_HUMAN NUCLEOLIN
          Length = 2312

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 571 tcgtcgtcatcctcgtcctcatc 549
to top
>dbj|AK000221.1| Homo sapiens cDNA FLJ20214 fis, clone COLF2014, highly similar to
           NUCL_HUMAN NUCLEOLIN
          Length = 2542

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 845 tcgtcgtcatcctcgtcctcatc 823
to top
>ref|XM_314238.1| Anopheles gambiae str. PEST ENSANGP00000014447
           (ENSANGG00000011958), partial mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 292 tcgtcntcatcctcgtcctcatc 314
           ||||| |||||||||||||||||
Sbjct: 248 tcgtcctcatcctcgtcctcatc 226
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 235     gggcctcgcgcagcagctcc 254
               ||||||||||||||||||||
Sbjct: 1291539 gggcctcgcgcagcagctcc 1291520
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>gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 of 74 of the complete
             sequence
          Length = 290042

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 303   ctcgtcctcatcgntaccctcatcgtc 329
             |||||||||||||  ||||||||||||
Sbjct: 34630 ctcgtcctcatcgtcaccctcatcgtc 34656
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>emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in linkage group 16,
             complete sequence
          Length = 208738

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   gacatgaaaaaggtaaaaca 152
             ||||||||||||||||||||
Sbjct: 54121 gacatgaaaaaggtaaaaca 54102
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>gb|M60858.1|HUMNUCLEO Human nucleolin gene, complete cds
          Length = 10942

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 292  tcgtcntcatcctcgtcctcatc 314
            ||||| |||||||||||||||||
Sbjct: 4719 tcgtcgtcatcctcgtcctcatc 4697
to top
>dbj|AB055706.1| Rhodococcus sp. RHA1 genes for benzoate 1,2-dioxygenase ISP alpha
            subunit, benzoate 1,2-dioxygenase ISP beta subunit,
            benzoate 1,2-dioxygenase reductase subunit,
            2-hydro-1,2-dihydroxybenzoate dehydrogenase and putative
            benzoate transporter, complete cds
          Length = 6961

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 67   gagcaccccgccggcgggggcgcc 90
            ||||||||||||||||||| ||||
Sbjct: 5703 gagcaccccgccggcggggacgcc 5680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,019,686
Number of Sequences: 3902068
Number of extensions: 2019686
Number of successful extensions: 43318
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43017
Number of HSP's gapped (non-prelim): 300
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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