>IF3_THETN (Q8R9C2) Translation initiation factor IF-3|
          Length = 180

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = -2

Query: 353 PFLEDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLSSFLKRHASNLRVVSR* 174
           P +ED  F    +   ++F++ G K  V++R  G + +  S     LKR A  LR     
Sbjct: 102 PNIEDHDFGVK-LKSAIKFLKDGDKVKVTIRFRGREAAHTSLAEDLLKRFAEELREYGNV 160

Query: 173 FIRSSLDGRSFNCIL 129
               S+DGR+   ++
Sbjct: 161 EKAPSMDGRNMMMVI 175

>SPEE1_LEPIN (Q8EZP1) Probable spermidine synthase 1 (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase 1) (SPDSY 1)
          Length = 498

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 386 KNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLS 222
           KNVES   VDL     + F EHG+ +EL      S K+  V +  +   +W + S
Sbjct: 299 KNVESVTLVDLDSAITNLFSEHGILKEL---NEESLKNSKVTVINTDAFLWLEES 350

>PCRA_BACST (P56255) ATP-dependent DNA helicase pcrA (EC 3.6.1.-)|
          Length = 724

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 344 EDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLSSFL 213
           E S FE  G   ELE +  G+K + ++  F SQ+  W+QL  ++
Sbjct: 438 ELSLFEALG---ELEMIGLGAKAAGALAAFRSQLEQWTQLQEYV 478

>DDX28_MOUSE (Q9CWT6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)|
           (Mitochondrial DEAD box protein 28)
          Length = 540

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -3

Query: 385 RMWSLRVQLTSHFL------KIPALKNMGYRGSWSLLGQGPRNQLVCGSSVPK 245
           R W  R     HF       + PAL+N+  RGS+  LG  PR  L    +VP+
Sbjct: 95  RGWKHRRSRQDHFSIERVQQEAPALRNLSSRGSFVDLGLEPRVLLALQEAVPE 147

>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; UL26.5
           protein; C-terminal peptide]
          Length = 635

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 385 RMWSLRVQLTSHFLKIPALKNMGYRGSWSLLGQGPRNQLVCG 260
           R W+  V+  +H L   A+ NM  R  WSL+ +  R   + G
Sbjct: 200 RTWAPGVEALTHTLLSTAVNNMMLRDRWSLVAERRRQAGIAG 241

>NOIL_ELAOL (Q8S3M3) NOI-like protein|
          Length = 228

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
 Frame = +1

Query: 172 NHLDTTRRLEACRFKNELSWL---------HMEIWEPKSRTLTDFLDPVLTNSSSLDTPC 324
           NH  T+  + +   +N  +WL         + ++ E KS   T       T S  L   C
Sbjct: 117 NH-GTSATMSSSVKRNSDNWLPQHQHHRRTNKDLAEGKSWLFTTTTASSYTKSRKLSREC 175

Query: 325 SSKLESSRNGRSTVPSDST 381
           SS  +SS + ++ VP D T
Sbjct: 176 SSTTQSSISAKNLVPGDET 194

>SPEE1_LEPIC (Q72V65) Probable spermidine synthase 1 (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase 1) (SPDSY 1)
          Length = 498

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 386 KNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLS 222
           KNVES   VDL     + F EHG+ ++L      S K+  V +  +   +W + S
Sbjct: 299 KNVESVTLVDLDSAITNLFSEHGILKKL---NEESLKNSKVTVINTDAFLWLEES 350

>K1688_HUMAN (Q9C0H5) Protein KIAA1688|
          Length = 1083

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 283 DPVLTNSSSLDTPCSSKLESSRNGRSTVPSDS 378
           +P L  S S D    ++ ESSR  RS VPS S
Sbjct: 646 EPYLHPSQSEDLAACAQFESSRQSRSGVPSSS 677


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,915,132
Number of Sequences: 219361
Number of extensions: 1265884
Number of successful extensions: 2951
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2951
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)