ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal22o07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
3dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
4dbj|AK062125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
5gb|AC040926.5| Homo sapiens chromosome 8, clone RP11-776K3, comp... 42 1.5
6ref|NM_105370.1| Arabidopsis thaliana ATP binding / kinase/ prot... 40 5.9
7gb|AC095688.7| Rattus norvegicus 2 BAC CH230-9C20 (Children's Ho... 40 5.9
8gb|AC158549.8| Mus musculus chromosome 19, clone RP24-216K4, com... 40 5.9
9gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genom... 40 5.9
10gb|DP000049.1| Dasypus novemcinctus target 126 genomic scaffold 40 5.9
11gb|CP000043.1| Bacillus cereus E33L plasmid pE33L8, complete seq... 40 5.9
12gb|AC109637.3| Homo sapiens BAC clone RP11-325A18 from 2, comple... 40 5.9
13gb|AC020547.7| Homo sapiens BAC clone RP11-134F3 from 2, complet... 40 5.9
14gb|AF241720.1| Penicillium sp. KCTC16087 small subunit ribosomal... 40 5.9
15gb|AE015927.1| Clostridium tetani E88, complete genome 40 5.9 
>dbj|AK066777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075L23, full
            insert sequence
          Length = 2082

 Score =  103 bits (52), Expect = 5e-19
 Identities = 164/202 (81%)
 Strand = Plus / Minus

                                                                        
Query: 226  agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 285
            ||||||||||| | ||||||||  ||||| ||||| ||||||   || ||||| || || 
Sbjct: 1530 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 1471

                                                                        
Query: 286  cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 345
            |||  ||||||||| ||||||||||| ||||| |||| |||  || ||||||  ||||||
Sbjct: 1470 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 1411

                                                                        
Query: 346  agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctnggagcaaa 405
            |||||||| |   |||||| ||||||||| || |||||||| |||||||||  ||| || 
Sbjct: 1410 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 1351

                                  
Query: 406  tagtttataaccttangaacct 427
            ||||||||||||| | ||||||
Sbjct: 1350 tagtttataacctcaggaacct 1329



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 100  tgactactttacataaagaataatgaatacaatatacaattgaagcttctaccatc 155
            ||||||||||| |||||||||||||||||||||||   | ||||||||||| ||||
Sbjct: 1651 tgactactttaaataaagaataatgaatacaatatttgactgaagcttctaacatc 1596
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 157/193 (81%)
 Strand = Plus / Minus

                                                                            
Query: 226      agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 285
                ||||||||||| | ||||||||  ||||| ||||| ||||||   || ||||| || || 
Sbjct: 14374050 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 14373991

                                                                            
Query: 286      cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 345
                |||  ||||||||| ||||||||||| ||||| |||| |||  || ||||||  ||||||
Sbjct: 14373990 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 14373931

                                                                            
Query: 346      agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctnggagcaaa 405
                |||||||| |   |||||| ||||||||| || |||||||| |||||||||  ||| || 
Sbjct: 14373930 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 14373871

                             
Query: 406      tagtttataacct 418
                |||||||||||||
Sbjct: 14373870 tagtttataacct 14373858



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                        
Query: 100      tgactactttacataaagaataatgaatacaatatacaattgaagcttctaccatc 155
                ||||||||||| |||||||||||||||||||||||   | ||||||||||| ||||
Sbjct: 14374171 tgactactttaaataaagaataatgaatacaatatttgactgaagcttctaacatc 14374116
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>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0526E12
          Length = 150872

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 157/193 (81%)
 Strand = Plus / Minus

                                                                          
Query: 226    agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 285
              ||||||||||| | ||||||||  ||||| ||||| ||||||   || ||||| || || 
Sbjct: 101925 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 101866

                                                                          
Query: 286    cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 345
              |||  ||||||||| ||||||||||| ||||| |||| |||  || ||||||  ||||||
Sbjct: 101865 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 101806

                                                                          
Query: 346    agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctnggagcaaa 405
              |||||||| |   |||||| ||||||||| || |||||||| |||||||||  ||| || 
Sbjct: 101805 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 101746

                           
Query: 406    tagtttataacct 418
              |||||||||||||
Sbjct: 101745 tagtttataacct 101733



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                      
Query: 100    tgactactttacataaagaataatgaatacaatatacaattgaagcttctaccatc 155
              ||||||||||| |||||||||||||||||||||||   | ||||||||||| ||||
Sbjct: 102046 tgactactttaaataaagaataatgaatacaatatttgactgaagcttctaacatc 101991
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>dbj|AK062125.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D07, full
           insert sequence
          Length = 395

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 100 tgactactttacataaagaataatgaatacaatatacaattgaagcttctaccatc 155
           ||||||||||| |||||||||||||||||||||||   | ||||||||||| ||||
Sbjct: 189 tgactactttaaataaagaataatgaatacaatatttgactgaagcttctaacatc 134
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>gb|AC040926.5| Homo sapiens chromosome 8, clone RP11-776K3, complete sequence
          Length = 204177

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 112   ataaagaataatgaatacaat 132
             |||||||||||||||||||||
Sbjct: 80854 ataaagaataatgaatacaat 80874
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>ref|NM_105370.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-tyrosine kinase
            AT1G67000 mRNA, complete cds
          Length = 2614

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 328  tcaaagctggaatcttcaag 347
            ||||||||||||||||||||
Sbjct: 2588 tcaaagctggaatcttcaag 2607
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>gb|AC095688.7| Rattus norvegicus 2 BAC CH230-9C20 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 176590

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   cataaagaataatgaataca 130
             ||||||||||||||||||||
Sbjct: 40448 cataaagaataatgaataca 40467
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>gb|AC158549.8| Mus musculus chromosome 19, clone RP24-216K4, complete sequence
          Length = 195500

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    acacatattcacatgccaca 53
             ||||||||||||||||||||
Sbjct: 51755 acacatattcacatgccaca 51774
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>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
             sequence
          Length = 90387

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   tcaaagctggaatcttcaag 347
             ||||||||||||||||||||
Sbjct: 33946 tcaaagctggaatcttcaag 33927
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>gb|DP000049.1| Dasypus novemcinctus target 126 genomic scaffold
          Length = 405580

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    ttacataaagaataatgaat 127
              ||||||||||||||||||||
Sbjct: 274987 ttacataaagaataatgaat 274968
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>gb|CP000043.1| Bacillus cereus E33L plasmid pE33L8, complete sequence
          Length = 8191

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  aatgaatacaatatacaatt 140
            ||||||||||||||||||||
Sbjct: 3705 aatgaatacaatatacaatt 3686
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>gb|AC109637.3| Homo sapiens BAC clone RP11-325A18 from 2, complete sequence
          Length = 17704

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   aaagaataatgaatacaata 133
             ||||||||||||||||||||
Sbjct: 17040 aaagaataatgaatacaata 17059
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>gb|AC020547.7| Homo sapiens BAC clone RP11-134F3 from 2, complete sequence
          Length = 167739

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  aaagaataatgaatacaata 133
            ||||||||||||||||||||
Sbjct: 1336 aaagaataatgaatacaata 1355
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>gb|AF241720.1| Penicillium sp. KCTC16087 small subunit ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 1351

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 actactttacataaagaata 121
           ||||||||||||||||||||
Sbjct: 67  actactttacataaagaata 48
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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 114     aaagaataatgaatacaata 133
               ||||||||||||||||||||
Sbjct: 2220951 aaagaataatgaatacaata 2220932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,692,256
Number of Sequences: 3902068
Number of extensions: 3692256
Number of successful extensions: 70203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70135
Number of HSP's gapped (non-prelim): 65
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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