Clone Information

BLAST Search Result

Clone Name	rbaal22n08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.2...	148	3e-36
2	YVBV_BACSU (O32256) Hypothetical transport protein yvbV	31	0.61
3	SDC_DROME (P49415) Syndecan precursor	31	0.80
4	UUP_BUCAI (P57445) ABC transporter ATP-binding protein uup	30	1.0
5	AROA_LACLA (Q9CEU0) 3-phosphoshikimate 1-carboxyvinyltransferase...	30	1.4
6	AROA_LACLC (P43905) 3-phosphoshikimate 1-carboxyvinyltransferase...	30	1.8
7	PC11X_PONPY (Q6WXV7) Protocadherin-11 X-linked precursor (Protoc...	30	1.8
8	PC11X_PANTR (Q71M42) Protocadherin-11 X-linked precursor (Protoc...	30	1.8
9	PC11X_PANPA (Q6WYY1) Protocadherin-11 X-linked precursor (Protoc...	30	1.8
10	PC11Y_HUMAN (Q9BZA8) Protocadherin-11 Y-linked precursor (Protoc...	29	2.3
11	FBX2_MOUSE (Q80UW2) F-box only protein 2	28	4.0
12	CARB_STAS1 (Q49WY4) Carbamoyl-phosphate synthase large chain (EC...	28	5.2
13	PC11X_GORGO (Q6X862) Protocadherin-11 X-linked precursor (Protoc...	28	5.2
14	NGN3_MOUSE (P70661) Neurogenin 3 (Atonal protein homolog 5) (Hel...	28	5.2
15	GP156_MOUSE (Q6PCP7) Probable G-protein coupled receptor 156 (GA...	28	5.2
16	E13B_CELCE (P22222) Glucan endo-1,3-beta-glucosidase precursor (...	28	6.8
17	E13B_ARTSW (Q59146) Glucan endo-1,3-beta-glucosidase precursor (...	28	6.8
18	CXB3_MOUSE (P28231) Gap junction beta-3 protein (Connexin-31) (C...	28	6.8
19	Y898_MYCBO (P0A5D4) Hypothetical protein Mb0898c	28	6.8
20	Y874_MYCTU (P0A5D3) Hypothetical protein Rv0874c/MT0897	28	6.8
21	NUON_BUCAP (Q8K9X5) NADH-quinone oxidoreductase chain N (EC 1.6....	28	6.8
22	SLU7_CRYNE (Q5KII3) Pre-mRNA-splicing factor SLU7	27	8.8
23	NFIP2_MOUSE (Q91ZP6) NEDD4 family-interacting protein 2 (NEDD4 W...	27	8.8
24	ACH10_RAT (Q9JLB5) Neuronal acetylcholine receptor protein, alph...	27	8.8
25	VE6_CRPVK (P03127) Protein E6	27	8.8
26	NAF1_HUMAN (Q15025) Nef-associated factor 1 (Naf1) (TNFAIP3-inte...	27	8.8
27	AROA_BUCAI (P57396) 3-phosphoshikimate 1-carboxyvinyltransferase...	27	8.8
28	FOLD_CHLMU (Q9PKW1) FolD bifunctional protein [Includes: Methyle...	27	8.8
29	SYFB_LEGPL (Q5WT87) Phenylalanyl-tRNA synthetase beta chain (EC ...	27	8.8
30	SYFB_LEGPH (Q5ZS09) Phenylalanyl-tRNA synthetase beta chain (EC ...	27	8.8
31	SYFB_LEGPA (Q5X1H8) Phenylalanyl-tRNA synthetase beta chain (EC ...	27	8.8
32	RL2_RHILO (Q98N54) 50S ribosomal protein L2	27	8.8

>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA|
           N-glycosidase)
          Length = 560

 Score =  148 bits (373), Expect = 3e-36
 Identities = 73/86 (84%), Positives = 76/86 (88%)
 Frame = -1

Query: 412 FYKEAADKGVHVRPGELVPLARHALAVPLHIPLTIELDLHRGGSGDEIVRGQLEFKTATD 233
           FY EAA  GV VRPGELVPLARHALAVPLH+PLTIELD+  GGSGDEIVRG+LEFKTA D
Sbjct: 477 FYNEAA--GVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAID 534

Query: 232 GLHVERLVGVNGAEFEVTILWSEYPW 155
           GLH  RLVGVN AEFEVTILWSEYPW
Sbjct: 535 GLHTGRLVGVNDAEFEVTILWSEYPW 560

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>YVBV_BACSU (O32256) Hypothetical transport protein yvbV|
          Length = 305

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = -2

Query: 222 WNVLLVSMVLNSR*QSYGRNTLGRHLCEPSGVLSAIVYIQILLYG 88
           W + LVS +LN     YG  T+G +   P+G+ SAIV+ Q +L G
Sbjct: 68  WPIYLVSALLNIT-LFYGLQTIGLNYL-PAGLFSAIVFFQPVLMG 110

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>SDC_DROME (P49415) Syndecan precursor|
          Length = 399

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 409 YKEAADKGVHV---RPGELVPLARHALAVPLHIPLTIELDLHRGGSGD 275
           Y +  DK + +    PG L P+  H      HIP T E+D+  G   D
Sbjct: 217 YNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIPTTDEIDVDGGDEDD 264

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>UUP_BUCAI (P57445) ABC transporter ATP-binding protein uup|
          Length = 596

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 182 HLEFSTIDTNKTFHMQAVGGSFELKLASNNFISGSTTMKVKLNRQRYVQWHGE 340
           HL+  TI   +TF ++   GS        NFI   +T  + L+R + V W G+
Sbjct: 155 HLDMKTIKWLETF-LKKFSGSILFVSHDRNFIQNVSTRIIDLDRGKLVSWPGD 206

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>AROA_LACLA (Q9CEU0) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 430

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = +2

Query: 224 MQAVGGSFELKLASNNFISGSTTMKVKLNRQRYVQWHGECMPRQRNQLP 370
           +QA+GG  E+    N  ++ + T+KVK ++ +  +  G+ +PR  ++LP
Sbjct: 269 IQAMGGQLEILEQDN--VAKAATLKVKASQLKGTEISGDLIPRLIDELP 315

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>AROA_LACLC (P43905) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 430

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/49 (28%), Positives = 32/49 (65%)
 Frame = +2

Query: 224 MQAVGGSFELKLASNNFISGSTTMKVKLNRQRYVQWHGECMPRQRNQLP 370
           +QA+GG  +L++   + ++ + T+KVK ++ +  +  G+ +PR  ++LP
Sbjct: 269 IQAMGG--QLEILEQDEVAKAATLKVKASQLKGTEISGDLIPRLIDELP 315

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>PC11X_PONPY (Q6WXV7) Protocadherin-11 X-linked precursor (Protocadherin-11)|
            (Protocadherin on the X chromosome)
          Length = 1347

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286  HHDEGQAQSSAVCAMARRVHASPTEPAPPVARALP-CQRPP 405
            H    QAQ+SA+C       AS    +PPV + +  C  PP
Sbjct: 1160 HSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIALCHSPP 1200

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>PC11X_PANTR (Q71M42) Protocadherin-11 X-linked precursor (Protocadherin-11)|
            (Protocadherin on the X chromosome)
          Length = 1347

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286  HHDEGQAQSSAVCAMARRVHASPTEPAPPVARALP-CQRPP 405
            H    QAQ+SA+C       AS    +PPV + +  C  PP
Sbjct: 1160 HSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIALCHSPP 1200

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>PC11X_PANPA (Q6WYY1) Protocadherin-11 X-linked precursor (Protocadherin-11)|
            (Protocadherin on the X chromosome)
          Length = 1347

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286  HHDEGQAQSSAVCAMARRVHASPTEPAPPVARALP-CQRPP 405
            H    QAQ+SA+C       AS    +PPV + +  C  PP
Sbjct: 1160 HSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIALCHSPP 1200

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>PC11Y_HUMAN (Q9BZA8) Protocadherin-11 Y-linked precursor (Protocadherin-11)|
            (Protocadherin-22) (Protocadherin on the Y chromosome)
            (PCDH-Y) (Protocadherin prostate cancer)
            (Protocadherin-PC)
          Length = 1340

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286  HHDEGQAQSSAVCAMARRVHASPTEPAPPVARALP-CQRPP 405
            H    QAQ+SA+C       AS    +PPV + +  C  PP
Sbjct: 1153 HSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPP 1193

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>FBX2_MOUSE (Q80UW2) F-box only protein 2|
          Length = 297

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 301 DLHRGGSGDEIVRGQLEFKTATDGLHVERLVGVNGAEF 188
           +L R   G+E + G  + +   DG  VE L G NG EF
Sbjct: 126 NLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDNGVEF 163

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>CARB_STAS1 (Q49WY4) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1057

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
 Frame = -1

Query: 394 DKGVHVRPGELVPLARHALAVPLHI--PLTIELDLHRGGSGDEIVRGQLEFKT-ATDGLH 224
           D GV V   ++V     A A    +  PL +      GG+G  I     EFK   T+GLH
Sbjct: 138 DLGVPVPESDIVNTVEQAFAFKEEVGYPLIVRPAFTMGGTGGGICHNDAEFKEIVTNGLH 197

Query: 223 V---------ERLVGVNGAEFEV 182
                     + + G    E+EV
Sbjct: 198 YSPATQCLIEKSIAGFKEIEYEV 220

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>PC11X_GORGO (Q6X862) Protocadherin-11 X-linked precursor (Protocadherin-11)|
            (Protocadherin on the X chromosome)
          Length = 1347

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286  HHDEGQAQSSAVCAMARRVHASPTEPAPPVARALP-CQRPP 405
            H    QAQ+SA+C       AS    +PPV + +  C  PP
Sbjct: 1160 HSSSLQAQASALCHSPPLSQASTQHHSPPVTQTIALCHSPP 1200

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>NGN3_MOUSE (P70661) Neurogenin 3 (Atonal protein homolog 5) (Helix-loop-helix|
           protein mATH-4B) (MATH4B)
          Length = 214

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 153 YQGYSDHKIVTSNSAPLTPT 212
           + G SDH++++SNS P +PT
Sbjct: 21  FPGASDHEVLSSNSTPPSPT 40

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>GP156_MOUSE (Q6PCP7) Probable G-protein coupled receptor 156 (GABAB-related|
           G-protein coupled receptor)
          Length = 798

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
 Frame = +1

Query: 175 RLSPRIQHH*HQQDVPHAG----------RRWQF*TQVGL*QFHLRIHHDEGQAQSSAVC 324
           R SPR+ HH  +  VP +           RR Q  T  G  Q         G    +  C
Sbjct: 624 RDSPRLDHHNARSKVPRSSSVKPSPLSEPRRKQG-TLEGSKQCETEPQEAGGACNVAFPC 682

Query: 325 AMARRVHA-SPTEPAPPVARALPCQRPP 405
             +  V A SP  P  P + ALP QR P
Sbjct: 683 QSSASVQAQSPAAPCLPSSPALPRQRQP 710

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>E13B_CELCE (P22222) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase)
          Length = 548

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -1

Query: 370 GELVPLARHALAVPLHIPLTIELDLHRG 287
           G LV +A  A AVP  IPLTI  D  RG
Sbjct: 25  GALVGVAAPASAVPATIPLTITNDSGRG 52

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>E13B_ARTSW (Q59146) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase)
          Length = 548

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -1

Query: 370 GELVPLARHALAVPLHIPLTIELDLHRG 287
           G LV +A  A AVP  IPLTI  D  RG
Sbjct: 25  GALVGVAAPASAVPATIPLTITNDSGRG 52

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>CXB3_MOUSE (P28231) Gap junction beta-3 protein (Connexin-31) (Cx31)|
          Length = 270

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 63  TYF*T-ASEFHIVVFVYTL*LIVLHLAHTGVYQGYSDHKIVTSNSAPLTPTRRSTCRPSV 239
           TYF   AS   I++ +  +  ++ H    G+ +G S   I    S+P + +R STCR   
Sbjct: 188 TYFMVGASAVCIILTICEICYLIFHRIMRGISKGKSTKSI----SSPKSSSRASTCRCHH 243

Query: 240 AVLNSSWP 263
            +L S  P
Sbjct: 244 KLLESGDP 251

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>Y898_MYCBO (P0A5D4) Hypothetical protein Mb0898c|
          Length = 386

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 364 LVPLARHALAVPLHIPLTIELDLHRGGSGDEIVRGQLEFKTATDGLHVERLVGVNGA-EF 188
           L P  R  ++  L I + ++  L   G GD ++RG L    +T  + ++ +V V    +F
Sbjct: 232 LSPDERALVSHGLQIGIVVDEHLAAPGQGDFVIRGLLGADPSTGSIEIDEVVQVGATMQF 291

Query: 187 EV 182
           +V
Sbjct: 292 QV 293

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>Y874_MYCTU (P0A5D3) Hypothetical protein Rv0874c/MT0897|
          Length = 386

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 364 LVPLARHALAVPLHIPLTIELDLHRGGSGDEIVRGQLEFKTATDGLHVERLVGVNGA-EF 188
           L P  R  ++  L I + ++  L   G GD ++RG L    +T  + ++ +V V    +F
Sbjct: 232 LSPDERALVSHGLQIGIVVDEHLAAPGQGDFVIRGLLGADPSTGSIEIDEVVQVGATMQF 291

Query: 187 EV 182
           +V
Sbjct: 292 QV 293

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>NUON_BUCAP (Q8K9X5) NADH-quinone oxidoreductase chain N (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain N) (NDH-1, chain N)
          Length = 486

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 213 LLVSMVLNSR*QSYGRNTLGRH--LCEPSGVLSAIVYIQILLYGTH 82
           L+V+M LN   QS+  +    +  LC PSG+L  I  I +L+ G +
Sbjct: 429 LIVNMYLNPSEQSFINDIKKSNFWLCSPSGILIFISGIMLLILGIY 474

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>SLU7_CRYNE (Q5KII3) Pre-mRNA-splicing factor SLU7|
          Length = 574

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 203 DTNKTFHMQAVGGSFELKLASNNFISGSTTMKVKLNR 313
           DTNKT  +   GG   L+   N  +SG T   V+ +R
Sbjct: 345 DTNKTSILAKYGGEEHLQRMPNELLSGQTENYVEYSR 381

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>NFIP2_MOUSE (Q91ZP6) NEDD4 family-interacting protein 2 (NEDD4 WW|
           domain-binding protein 5A) (Fragment)
          Length = 311

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = +1

Query: 220 PHAGRRWQF*TQVGL*QFHLRIHHDEGQAQSSAVCAMARRVHASPTEPAPPVARALPCQR 399
           P AGR      Q+G  ++ + +H++E  ++SSAV   +    A+PT  A   A AL    
Sbjct: 66  PEAGRMDHH--QLGTGRYQV-LHNEEDNSESSAVEQPSTSSLAAPTVEAAASAPALDPDS 122

Query: 400 PP 405
           PP
Sbjct: 123 PP 124

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>ACH10_RAT (Q9JLB5) Neuronal acetylcholine receptor protein, alpha-10 subunit|
           precursor (Nicotinic acetylcholine receptor subunit
           alpha 10) (NACHR alpha 10)
          Length = 447

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 322 CAMARRVHASPTEPAPPVARALPCQRPPC 408
           C  ++ + ++P+   PP + A PC  P C
Sbjct: 357 CGQSKPLESAPSLQPPPASPAGPCHEPRC 385

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>VE6_CRPVK (P03127) Protein E6|
          Length = 273

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 384 CTCDRGSWFRWRGMHSPC 331
           C  D+G +F+WRG  S C
Sbjct: 123 CCIDKGQYFQWRGHCSSC 140

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>NAF1_HUMAN (Q15025) Nef-associated factor 1 (Naf1) (TNFAIP3-interacting|
           protein 1) (HIV-1 Nef-interacting protein)
           (Virion-associated nuclear shuttling protein) (VAN)
           (hVAN) (Nip40-1)
          Length = 636

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 340 VHASPTEPAPPVARALPCQRPP 405
           V ASPT PA P  +  P Q+PP
Sbjct: 96  VTASPTAPACPSDKPAPVQKPP 117

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>AROA_BUCAI (P57396) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 427

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 185 LEFSTIDTNKTFHMQAVGGSFELKLASNNFISGSTT 292
           + ++  D  KT H+Q +GG F L  A + ++  + T
Sbjct: 63  VRYNLSDDKKTCHVQGIGGPFHLSEAISLYLGNAGT 98

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>FOLD_CHLMU (Q9PKW1) FolD bifunctional protein [Includes:|
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)]
          Length = 287

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 144 CEPSGVLSAIVYIQILLYGTH 82
           C PSG++    Y +I LYG H
Sbjct: 135 CTPSGIVELFKYYEIPLYGKH 155

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>SYFB_LEGPL (Q5WT87) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 793

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
 Frame = -2

Query: 366 SWFRWRGMHSPCHCTYR*RLSLTFIVVDPE-----------MKLLEANLSSKLPPTACMW 220
           SWF  +G H           ++++  VDPE           M+LL    S      A MW
Sbjct: 501 SWFSAKGYHE----------TISYSFVDPELQEALYPQKEFMELLNPISSELSQMRAGMW 550

Query: 219 NVLLVSMVLNSR*Q 178
             L+ SM+ NS  Q
Sbjct: 551 PGLIASMIYNSHRQ 564

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>SYFB_LEGPH (Q5ZS09) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 793

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
 Frame = -2

Query: 366 SWFRWRGMHSPCHCTYR*RLSLTFIVVDPE-----------MKLLEANLSSKLPPTACMW 220
           SWF  +G H           ++++  VDPE           M+LL    S      A MW
Sbjct: 501 SWFSAKGYHE----------TISYSFVDPELQEALYPQKEFMELLNPISSELSQMRAGMW 550

Query: 219 NVLLVSMVLNSR*Q 178
             L+ SM+ NS  Q
Sbjct: 551 PGLIASMIYNSHRQ 564

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>SYFB_LEGPA (Q5X1H8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 793

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
 Frame = -2

Query: 366 SWFRWRGMHSPCHCTYR*RLSLTFIVVDPE-----------MKLLEANLSSKLPPTACMW 220
           SWF  +G H           ++++  VDPE           M+LL    S      A MW
Sbjct: 501 SWFSAKGYHE----------TISYSFVDPELQEALYPQKEFMELLNPISSELSQMRAGMW 550

Query: 219 NVLLVSMVLNSR*Q 178
             L+ SM+ NS  Q
Sbjct: 551 PGLIASMIYNSHRQ 564

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>RL2_RHILO (Q98N54) 50S ribosomal protein L2|
          Length = 277

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -1

Query: 406 KEAADKGVHVRPGELVPLARHALAVPLHIPLTIELDLHRGGSGDEIVRGQLEFKTATDGL 227
           K  A + V V+PG  +PLA   +   +H    IEL   +GG       G  +      G+
Sbjct: 115 KIVAGEAVDVKPGNAMPLASMPVGTIVH---NIELKPGKGGQVARSAGGYAQLVGRDQGM 171

Query: 226 HVERL 212
            + RL
Sbjct: 172 AILRL 176


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,382,409
Number of Sequences: 219361
Number of extensions: 1224825
Number of successful extensions: 3702
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3701
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

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