ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal23c07 |
|---|---|
| Clone Library Name | barley_pub |
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 59.3 bits (142), Expect = 2e-09 Identities = 33/54 (61%), Positives = 36/54 (66%) Frame = -3 Query: 401 LTLQXXXXXXXXXXXXXXXXKSEXAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 240 LTLQ KSE AEYQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 187 LTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 57.0 bits (136), Expect = 1e-08 Identities = 30/54 (55%), Positives = 35/54 (64%) Frame = -3 Query: 401 LTLQXXXXXXXXXXXXXXXXKSEXAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 240 LTLQ S+ A+YQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 187 LTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 57.0 bits (136), Expect = 1e-08 Identities = 30/54 (55%), Positives = 35/54 (64%) Frame = -3 Query: 401 LTLQXXXXXXXXXXXXXXXXKSEXAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 240 LTLQ S+ A+YQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 187 LTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 56.6 bits (135), Expect = 1e-08 Identities = 31/54 (57%), Positives = 36/54 (66%) Frame = -3 Query: 401 LTLQXXXXXXXXXXXXXXXXKSEXAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 240 LTLQ KSE AEYQKLLA RLKEQR++RSES+AK+RS+LS Sbjct: 137 LTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRLS 190
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/28 (64%), Positives = 23/28 (82%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSESMAKRR 252 E AEY KLLA+RLKE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 39.3 bits (90), Expect = 0.002 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSESMAKRR 252 E AEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 39.3 bits (90), Expect = 0.002 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSESMAKRR 252 E AEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 39.3 bits (90), Expect = 0.002 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSESMAKRR 252 E AEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/28 (57%), Positives = 23/28 (82%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSESMAKRR 252 E +EY KLLA+R+KE +++R E +AKRR Sbjct: 205 EASEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/28 (57%), Positives = 23/28 (82%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSESMAKRR 252 E A+Y KLLA+R+KE +++R E +AKRR Sbjct: 205 EAADYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 36.6 bits (83), Expect = 0.015 Identities = 16/28 (57%), Positives = 22/28 (78%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSESMAKRR 252 E +EY KLLA+R KE +++R E +AKRR Sbjct: 205 EASEYAKLLAKRSKEAKEKRQEQIAKRR 232
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 35.0 bits (79), Expect = 0.043 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = -3 Query: 338 SEXAEYQKLLAQRLKEQRDRRSESMAKRRS 249 S A+Y KLLAQR KE + RR E + +RRS Sbjct: 208 SAEADYAKLLAQRKKESKVRRQEEIKRRRS 237
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 33.1 bits (74), Expect = 0.16 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 326 EYQKLLAQRLKEQRDRRSESMAKRRS 249 +Y KLLAQR KE + RR E + +RRS Sbjct: 212 DYAKLLAQRKKESKVRRQEELKRRRS 237
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 31.6 bits (70), Expect = 0.47 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSE-SMAKRRSK 246 + AEY KLLAQR+KE ++R+ E + RSK Sbjct: 206 DHAEYTKLLAQRMKEAKERKMERKRSNSRSK 236
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 30.8 bits (68), Expect = 0.81 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -3 Query: 329 AEYQKLLAQRLKEQRDRRSESMAKRRSKL 243 AEY +LLAQRL E++ R+E +R S L Sbjct: 206 AEYAQLLAQRLHERKAERAEIKKRRASSL 234
>COXN_BRAJA (P98000) Alternative cytochrome c oxidase subunit 1 (EC 1.9.3.1)| (Alternative cytochrome c oxidase polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1) Length = 591 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -3 Query: 191 FALCWKNLPATFSFLGLVIDAVLREHGYFIVGSF--VTGVAXLVFVLDAIYH 42 F + + N T FLG V+ V F+V F V GVA ++ VL AIYH Sbjct: 383 FIITFVNGGLTGLFLGNVVVDVPLSDTMFVVAHFHMVMGVAPIMVVLGAIYH 434
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = -3 Query: 329 AEYQKLLAQRLKEQRDRRSESMAKRRSKL 243 AEY +LLA+RL E++ ++E+ +R S L Sbjct: 206 AEYAQLLAKRLAERKAEKAETRKRRASSL 234
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 329 AEYQKLLAQRLKEQRDRRSESMAKRRSKL 243 A+Y KLL QR KE + +R E+ +R + + Sbjct: 208 ADYAKLLVQRKKESKAKREEAKRRRSASI 236
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 329 AEYQKLLAQRLKEQRDRRSESMAKRRSKL 243 AEY +LLA+RL E++ ++E +R S L Sbjct: 206 AEYAQLLAKRLTEKKAEKAEERKRRASSL 234
>RS6_BRAFL (O01727) 40S ribosomal protein S6| Length = 244 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = -3 Query: 335 EXAEYQKLLAQRLKEQRDRRSESMAKRRS 249 E A Y KLLA+R KE+R E+ AKRRS Sbjct: 206 EEATYAKLLAKRKKEER----EAHAKRRS 230
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -3 Query: 329 AEYQKLLAQRLKEQRDRRSESMAKRRSKL 243 AEY +LLA+R+ E++ ++E +R S L Sbjct: 207 AEYAQLLAKRVAEKKSEKAEEKKRRASSL 235
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 329 AEYQKLLAQRLKEQRDRRSESMAKRRSKL 243 AEY +LLA+RL E++ ++E +R S L Sbjct: 206 AEYAQLLAKRLSERKAEKAEIRKRRASSL 234
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 329 AEYQKLLAQRLKEQRDRRSESMAKRRSKL 243 AEY +LLA+RL E++ ++E +R S L Sbjct: 206 AEYAQLLAKRLSERKAEKAEVRKRRASSL 234
>KLC_LOLPE (P46825) Kinesin light chain (KLC)| Length = 571 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Frame = +2 Query: 134 QLPTQEN*K*RVDFSNKVRRDGNNLKQRQQEPL*QQTALTSSWPCSHCGG-------LSA 292 ++ T E K ++F N++++ N Q +E +Q++L +P G + Sbjct: 143 KVATIEEEKKHLEFMNEMKKYDTNEAQVNEEKESEQSSLDLGFPDDDDDGGQPEVLSPTQ 202 Query: 293 PSAFAQAASG 322 PSA AQAASG Sbjct: 203 PSAMAQAASG 212
>VG63_ICHV1 (Q00159) Hypothetical gene 63 protein| Length = 662 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = -3 Query: 191 FALCWKNLPATFSFLGLVIDAVLREHGYFIVGSFVTGVAXLVFVLDA 51 + LC++N+ F G+ + ++ E +F+ GV+ V +DA Sbjct: 425 YELCFQNIREAADFTGVFQELLMEEDSFFVYTVTNDGVSTRVCAIDA 471 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,180,720 Number of Sequences: 219361 Number of extensions: 539053 Number of successful extensions: 1316 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1304 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1316 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
