Clone Information

BLAST Search Result

Clone Name	rbaal22n05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY065971.1\| Triticum aestivum phosphoethanolamine methyltrans...	656	0.0
2	ref\|XM_475841.1\| Oryza sativa (japonica cultivar-group), predic...	252	1e-63
3	gb\|AY103779.1\| Zea mays PCO126548 mRNA sequence	170	3e-39
4	gb\|AY626156.3\| Zea mays putative phosphoethanolamine N-methyltra...	127	5e-26
5	gb\|AC130725.2\| Oryza sativa (japonica cultivar-group) chromosome...	111	3e-21
6	gb\|AC136492.3\| Oryza sativa (japonica cultivar-group) chromosome...	111	3e-21
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
8	gb\|AY105261.1\| Zea mays PCO129777 mRNA sequence	74	6e-10
9	ref\|NM_192178.1\| Oryza sativa (japonica cultivar-group), predic...	72	2e-09
10	gb\|AY551100.1\| Oryza sativa (indica cultivar-group) phosphoethan...	72	2e-09
11	dbj\|AK069137.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	72	2e-09
12	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
13	dbj\|AP003248.4\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
14	dbj\|AK102037.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	66	1e-07
15	gb\|AC108554.8\| Rattus norvegicus 7 BAC CH230-81L13 (Children's H...	48	0.034
16	dbj\|AB196771.1\| Atriplex nummularia AnPEAMT mRNA for phosphoetha...	48	0.034
17	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	44	0.54
18	emb\|Z35641.2\|CEC38H2 Caenorhabditis elegans Cosmid C38H2, comple...	42	2.1
19	dbj\|AB090883.1\| Aster tripolium mRNA for phosphoethanolamine N-m...	42	2.1
20	gb\|U00090.1\| Rhizobium sp. NGR234 plasmid pNGR234a, complete seq...	42	2.1
21	gb\|AC008285.7\| Drosophila melanogaster clone BACR31P16, complete...	40	8.4
22	ref\|XM_589053.2\| PREDICTED: Bos taurus similar to zinc finger, M...	40	8.4
23	gb\|AE007294.1\| Sinorhizobium meliloti 1021 plasmid pSymA section...	40	8.4
24	gb\|AC124417.5\| Mus musculus BAC clone RP24-313G11 from chromosom...	40	8.4
25	ref\|XM_757246.1\| Ustilago maydis 521 hypothetical protein (UM061...	40	8.4
26	emb\|Z81493.1\|CEF01D5 Caenorhabditis elegans Cosmid F01D5, comple...	40	8.4
27	gb\|AY223048.1\| Schistosoma japonicum clone ZZD120 mRNA sequence	40	8.4
28	emb\|AL953854.21\| Human DNA sequence from clone RP11-211P14 on ch...	40	8.4
29	emb\|BX664730.2\| Human DNA sequence from clone RP11-118H15 on chr...	40	8.4
30	emb\|AL935212.11\| Human DNA sequence from clone RP11-160N1 on chr...	40	8.4
31	emb\|AL954685.6\| Human DNA sequence from clone RP11-237M21 on chr...	40	8.4
32	emb\|AL953883.5\| Human DNA sequence from clone RP11-246P17 on chr...	40	8.4
33	emb\|AL590311.5\| Human DNA sequence from clone RP11-20F16 on chro...	40	8.4
34	emb\|AL353791.7\| Human DNA sequence from clone RP11-475B17 on chr...	40	8.4
35	emb\|BX572601.1\| Rhodopseudomonas palustris CGA009 complete genom...	40	8.4
36	gb\|AC007995.23\| Mus musculus, clone RP23-266E9, complete sequence	40	8.4
37	gb\|AC010571.8\| Drosophila melanogaster 3L BAC RP98-22O3 (Roswell...	40	8.4
38	dbj\|AP008230.1\| Desulfitobacterium hafniense Y51 genomic DNA, co...	40	8.4
39	gb\|AC012049.8\| Homo sapiens chromosome 10 clone RP11-76F22, comp...	40	8.4
40	ref\|NM_143309.1\| Drosophila melanogaster CG13972-RA (CG13972), mRNA	40	8.4
41	gb\|AC022537.8\| Homo sapiens chromosome 10 clone RP11-40C11, comp...	40	8.4
42	ref\|NM_064535.2\| Caenorhabditis elegans F01D5.6 (F01D5.6) mRNA, ...	40	8.4
43	gb\|AY194228.1\| Enterobacter cloacae succinate dehydrogenase cyto...	40	8.4
44	gb\|AC007817.7\|AC007817 Drosophila melanogaster, chromosome 3R, r...	40	8.4
45	gb\|AC006207.5\| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Ca...	40	8.4
46	emb\|BX545849.7\| Mouse DNA sequence from clone RP23-232N16 on chr...	40	8.4
47	gb\|AY943952.1\| Streptomyces sp. F11 plasmid pFP11, complete sequ...	40	8.4
48	gb\|AE003761.2\| Drosophila melanogaster chromosome 3R, section 99...	40	8.4
49	gb\|AE003595.3\| Drosophila melanogaster chromosome 3L, section 76...	40	8.4
50	dbj\|AP001803.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	8.4
51	emb\|AL591855.11\| Human DNA sequence from clone RP11-4C12 on chro...	40	8.4

>gb|AY065971.1| Triticum aestivum phosphoethanolamine methyltransferase mRNA,
            complete cds
          Length = 1782

 Score =  656 bits (331), Expect = 0.0
 Identities = 455/498 (91%), Gaps = 6/498 (1%)
 Strand = Plus / Minus

                                                                        
Query: 120  gcaccgatcctctttatttaattcttaaccgaagccgaagccgctctgcttccggatcat 179
            |||||||||||||||||||| |||||||    | | ||||| ||||||||||||||||||
Sbjct: 1635 gcaccgatcctctttattta-ttcttaat---aacagaagcggctctgcttccggatcat 1580

                                                                        
Query: 180  cgcgtagcgtggcgtcgctgctcggcggccagatcacttggtcgcgatgaacagccccca 239
            |||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 cgcgtc-cacggcgtcgctgctcggcggccagatcacttggtcgcgatgaacagccccca 1521

                                                                        
Query: 240  cttctgctcgccggcggagctccgcttcagcttcgcgctccacccgttgacgatgtcgtc 299
            ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1520 cttctgctcgccggcagagctccgcttcagcttcgcgctccagccgttgacgatgtcgtc 1461

                                                                        
Query: 300  gtagtcctcctggctgaagtccgccaggaaggcctccttgttcttctcggtctcgcccag 359
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 gtagtcctcctgggtgaagtccgccaggaaggcctccttgttcttctcggtctcgcccag 1401

                                                                        
Query: 360  ctccctctccaggaccctcaggaactggtcggtgcggtcttcggcgatgacgtcgtggaa 419
            ||||||||||||||||||||||||||||||||||||||| || |||| ||| || |||||
Sbjct: 1400 ctccctctccaggaccctcaggaactggtcggtgcggtcctcagcgacgacatcatggaa 1341

                                                                        
Query: 420  accggcatcctcaagcatctttccgtaggtcttcacatnatggaggtcatagcctctctg 479
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1340 accggcatcctcaagcatctttccgtaggtcttcacatcatggaggtcatagcctctctg 1281

                                                                        
Query: 480  cttgatgtacgcagcgaattcctntgatggcgtcccanggctcctgcantantcactgat 539
            ||||||||||||||||||||||| |||||| |||||| |||||||||| || ||||||||
Sbjct: 1280 cttgatgtacgcagcgaattcctctgatggtgtcccagggctcctgcagtagtcactgat 1221

                                                                        
Query: 540  cancactttgncaccaggnttnanncacttgaanaagtttnntgaacagancangcttgn 599
            || ||||||| | ||||| || |  |||||||| ||||||  |||||||| || | ||| 
Sbjct: 1220 cagcactttgcccccaggcttgagccacttgaagaagttt-ctgaacagagcaggtttgt 1162

                              
Query: 600  nttgaatgnngaggatgg 617
             |||||||  ||||||||
Sbjct: 1161 cttgaatgtggaggatgg 1144



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 12   acgtacgtacacat-acattatcttacagatccgggtgcccggcc 55
            |||||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1691 acgtacgtacacattatcttatcttacagatccgggtgcccggcc 1647

to top

>ref|XM_475841.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1488

 Score =  252 bits (127), Expect = 1e-63
 Identities = 296/356 (83%)
 Strand = Plus / Minus

                                                                        
Query: 217  ttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagcttcgcg 276
            ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 1484 ttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagcttcgcg 1425

                                                                        
Query: 277  ctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgccaggaaggcctcc 336
             |||| ||||| || ||||| ||||||||||||||| ||||||| |||| |||||| || 
Sbjct: 1424 ttccagccgttcacaatgtcatcgtagtcctcctgggtgaagtctgccatgaaggcttct 1365

                                                                        
Query: 337  ttgttcttctcggtctcgcccagctccctctccaggaccctcaggaactggtcggtgcgg 396
            |||||||||||    ||  | |||||||| |  || || | |||||||||||| ||||||
Sbjct: 1364 ttgttcttctcaacttcagcaagctccctttgaagaacacgcaggaactggtccgtgcgg 1305

                                                                        
Query: 397  tcttcggcgatgacgtcgtggaaaccggcatcctcaagcatctttccgtaggtcttcaca 456
            ||||| || ||||| |  |||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1304 tcttcagcaatgacatgatggaaaccagcatcctcaagcatctttccgtaagtcttcaca 1245

                                                                        
Query: 457  tnatggaggtcatagcctctctgcttgatgtacgcagcgaattcctntgatggcgtccca 516
            |  ||||||||||||||||||||||| ||||| ||||| ||||| | ||||||  |||||
Sbjct: 1244 tcgtggaggtcatagcctctctgcttaatgtaagcagcaaattcttctgatggtttccca 1185

                                                                    
Query: 517  nggctcctgcantantcactgatcancactttgncaccaggnttnanncacttgaa 572
             |  |||| || || |||||||| |  |||||| | ||||| || |  ||||||||
Sbjct: 1184 ggattcctacagtaatcactgatgaggactttgcccccaggtttcagccacttgaa 1129

to top

>gb|AY103779.1| Zea mays PCO126548 mRNA sequence
          Length = 2333

 Score =  170 bits (86), Expect = 3e-39
 Identities = 249/304 (81%)
 Strand = Plus / Minus

                                                                        
Query: 206  ggccagatcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgct 265
            ||||| |||||||||| || ||||||| ||||||| ||||||||||||| |||||||| |
Sbjct: 1913 ggccaaatcacttggtggcaatgaacaacccccacctctgctcgccggcagagctccgtt 1854

                                                                        
Query: 266  tcagcttcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgcca 325
            ||||||||||| |||| || || || |||||||| |||||||||||| ||||||| ||||
Sbjct: 1853 tcagcttcgcgttccagccattcacaatgtcgtcatagtcctcctgggtgaagtctgcca 1794

                                                                        
Query: 326  ggaaggcctccttgttcttctcggtctcgcccagctccctctccaggaccctcaggaact 385
            |||| || || |||||||| ||    || || | ||||||||  || ||  ||| |||||
Sbjct: 1793 ggaaagcgtctttgttcttttcaacttcacctatctccctctgtagaacattcaagaact 1734

                                                                        
Query: 386  ggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatctttccgt 445
            | || ||||| ||||| |||||||| |  || ||||| |||||||  ||||||| ||| |
Sbjct: 1733 gctcagtgcgatcttccgcgatgacattatgaaaaccagcatccttcagcatctgtccat 1674

                                                                        
Query: 446  aggtcttcacatnatggaggtcatagcctctctgcttgatgtacgcagcgaattcctntg 505
            | | |||||| |  || |||||||||||||||||||| ||||||||||| ||||| | ||
Sbjct: 1673 aagccttcacgtcgtgaaggtcatagcctctctgcttaatgtacgcagcaaattcttctg 1614

                
Query: 506  atgg 509
            ||||
Sbjct: 1613 atgg 1610

to top

>gb|AY626156.3| Zea mays putative phosphoethanolamine N-methyltransferase (PEAMT)
            mRNA, complete cds
          Length = 1806

 Score =  127 bits (64), Expect = 5e-26
 Identities = 228/283 (80%)
 Strand = Plus / Minus

                                                                        
Query: 206  ggccagatcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgct 265
            ||||| |||||||||| || ||||||| ||||||| ||||||| ||| | |||||||| |
Sbjct: 1647 ggccaaatcacttggtggcaatgaacaacccccacctctgctcaccgccagagctccgtt 1588

                                                                        
Query: 266  tcagcttcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaagtccgcca 325
            ||||||||||| |||| ||||| || |||||||| |||||||||||| ||||||| ||||
Sbjct: 1587 tcagcttcgcgttccagccgttcacaatgtcgtcatagtcctcctgggtgaagtctgcca 1528

                                                                        
Query: 326  ggaaggcctccttgttcttctcggtctcgcccagctccctctccaggaccctcaggaact 385
            |||| || || |||||||| ||    || || | ||||||||  || ||  ||| |||||
Sbjct: 1527 ggaaagcgtctttgttcttttcaacttcacctatctccctctgtagaacattcaagaact 1468

                                                                        
Query: 386  ggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatctttccgt 445
            | || ||||| ||||| |||||||| |  || ||||| |||||||  ||||||| ||| |
Sbjct: 1467 gctcagtgcgatcttccgcgatgacattatgaaaaccagcatccttcagcatctgtccat 1408

                                                       
Query: 446  aggtcttcacatnatggaggtcatagcctctctgcttgatgta 488
            | | || ||| | |||||| ||||| || |||||||| |||||
Sbjct: 1407 aagcctccacgtcatggagatcataacccctctgcttaatgta 1365

to top

>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                         
Query: 212   atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 271
             |||| ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 14613 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 14672

                                                     
Query: 272   tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 311
             ||||| |||| ||||| || ||||| ||||||||||||||
Sbjct: 14673 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 14712



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 110/135 (81%)
 Strand = Plus / Plus

                                                                         
Query: 438   ctttccgtaggtcttcacatnatggaggtcatagcctctctgcttgatgtacgcagcgaa 497
             ||||||||| ||||||||||  ||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 15156 ctttccgtaagtcttcacatcgtggaggtcatagcctctctgcttaatgtaagcagcaaa 15215

                                                                         
Query: 498   ttcctntgatggcgtcccanggctcctgcantantcactgatcancactttgncaccagg 557
             ||| | ||||||  ||||| |  |||| || || |||||||| |  |||||| | |||||
Sbjct: 15216 ttcttctgatggtttcccaggattcctacagtaatcactgatgaggactttgcccccagg 15275

                            
Query: 558   nttnanncacttgaa 572
              || |  ||||||||
Sbjct: 15276 tttcagccacttgaa 15290



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 384   ctggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 439
             |||||| ||||||||||| || ||||| |  |||||||| ||||||||||||||||
Sbjct: 14999 ctggtccgtgcggtcttcagcaatgacatgatggaaaccagcatcctcaagcatct 15054



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 308   cctggctgaagtccgccaggaaggcctccttgttcttctc 347
             ||||| ||||||| |||| |||||| || |||||||||||
Sbjct: 14799 cctgggtgaagtctgccatgaaggcttctttgttcttctc 14838

to top

>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
             complete sequence
          Length = 166218

 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                         
Query: 212   atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 271
             |||| ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 40454 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 40513

                                                     
Query: 272   tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 311
             ||||| |||| ||||| || ||||| ||||||||||||||
Sbjct: 40514 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 40553



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 110/135 (81%)
 Strand = Plus / Plus

                                                                         
Query: 438   ctttccgtaggtcttcacatnatggaggtcatagcctctctgcttgatgtacgcagcgaa 497
             ||||||||| ||||||||||  ||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 40997 ctttccgtaagtcttcacatcgtggaggtcatagcctctctgcttaatgtaagcagcaaa 41056

                                                                         
Query: 498   ttcctntgatggcgtcccanggctcctgcantantcactgatcancactttgncaccagg 557
             ||| | ||||||  ||||| |  |||| || || |||||||| |  |||||| | |||||
Sbjct: 41057 ttcttctgatggtttcccaggattcctacagtaatcactgatgaggactttgcccccagg 41116

                            
Query: 558   nttnanncacttgaa 572
              || |  ||||||||
Sbjct: 41117 tttcagccacttgaa 41131



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 384   ctggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 439
             |||||| ||||||||||| || ||||| |  |||||||| ||||||||||||||||
Sbjct: 40840 ctggtccgtgcggtcttcagcaatgacatgatggaaaccagcatcctcaagcatct 40895



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 308   cctggctgaagtccgccaggaaggcctccttgttcttctc 347
             ||||| ||||||| |||| |||||| || |||||||||||
Sbjct: 40640 cctgggtgaagtctgccatgaaggcttctttgttcttctc 40679

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                            
Query: 212      atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 271
                |||| ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 27008031 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 27008090

                                                        
Query: 272      tcgcgctccacccgttgacgatgtcgtcgtagtcctcctg 311
                ||||| |||| ||||| || ||||| ||||||||||||||
Sbjct: 27008091 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 27008130



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 110/135 (81%)
 Strand = Plus / Plus

                                                                            
Query: 438      ctttccgtaggtcttcacatnatggaggtcatagcctctctgcttgatgtacgcagcgaa 497
                ||||||||| ||||||||||  ||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 27008574 ctttccgtaagtcttcacatcgtggaggtcatagcctctctgcttaatgtaagcagcaaa 27008633

                                                                            
Query: 498      ttcctntgatggcgtcccanggctcctgcantantcactgatcancactttgncaccagg 557
                ||| | ||||||  ||||| |  |||| || || |||||||| |  |||||| | |||||
Sbjct: 27008634 ttcttctgatggtttcccaggattcctacagtaatcactgatgaggactttgcccccagg 27008693

                               
Query: 558      nttnanncacttgaa 572
                 || |  ||||||||
Sbjct: 27008694 tttcagccacttgaa 27008708



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 384      ctggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 439
                |||||| ||||||||||| || ||||| |  |||||||| ||||||||||||||||
Sbjct: 27008417 ctggtccgtgcggtcttcagcaatgacatgatggaaaccagcatcctcaagcatct 27008472



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 308      cctggctgaagtccgccaggaaggcctccttgttcttctc 347
                ||||| ||||||| |||| |||||| || |||||||||||
Sbjct: 27008217 cctgggtgaagtctgccatgaaggcttctttgttcttctc 27008256

to top

>gb|AY105261.1| Zea mays PCO129777 mRNA sequence
          Length = 1012

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 463 aggtcatagcctctctgcttgatgtacgcagcgaattcctntgatggcgtcccanggctc 522
           |||||||| ||||||||||| |||||||| || ||||||| ||||||  ||||| | |||
Sbjct: 861 aggtcataacctctctgcttaatgtacgctgcaaattcctctgatggtttcccaggactc 802

                            
Query: 523 ctgcantantcactgat 539
           ||||| || ||||||||
Sbjct: 801 ctgcagtagtcactgat 785

to top

>ref|NM_192178.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1500

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 379  aggaactggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatc 438
            |||||||| |||||||||||||| || ||||| || |||||||| |||| ||||||||||
Sbjct: 1334 aggaactgatcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatc 1275

                    
Query: 439  tttccgta 446
            | ||||||
Sbjct: 1274 tgtccgta 1267



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                        
Query: 213  tcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagctt 272
            |||||||||||||||||||||||||||| ||||||| || || || ||||  |  || ||
Sbjct: 1500 tcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagttt 1441

                                                         
Query: 273  cgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 317
             ||  |||| || || || ||| ||||||||||||||||||||||
Sbjct: 1440 tgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1396

to top

>gb|AY551100.1| Oryza sativa (indica cultivar-group) phosphoethanolamine
            N-methyltransferase (PEAMT) mRNA, complete cds
          Length = 1986

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 379  aggaactggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatc 438
            |||||||| |||||||||||||| || ||||| || |||||||| |||| ||||||||||
Sbjct: 1532 aggaactgatcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatc 1473

                    
Query: 439  tttccgta 446
            | ||||||
Sbjct: 1472 tgtccgta 1465



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 212  atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 271
            ||||||||||||||||||||||||||||| ||||||| || || || ||||  |  || |
Sbjct: 1699 atcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagtt 1640

                                                          
Query: 272  tcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 317
            | ||  |||| || || || ||| ||||||||||||||||||||||
Sbjct: 1639 ttgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1594

to top

>dbj|AK069137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008P07, full
            insert sequence
          Length = 2069

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 379  aggaactggtcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatc 438
            |||||||| |||||||||||||| || ||||| || |||||||| |||| ||||||||||
Sbjct: 1617 aggaactgatcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatc 1558

                    
Query: 439  tttccgta 446
            | ||||||
Sbjct: 1557 tgtccgta 1550



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 212  atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 271
            ||||||||||||||||||||||||||||| ||||||| || || || ||||  |  || |
Sbjct: 1784 atcacttggtcgcgatgaacagcccccacctctgctcaccagcagaactcctttgaagtt 1725

                                                          
Query: 272  tcgcgctccacccgttgacgatgtcgtcgtagtcctcctggctgaa 317
            | ||  |||| || || || ||| ||||||||||||||||||||||
Sbjct: 1724 ttgccttccatccattcacaatggcgtcgtagtcctcctggctgaa 1679

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                     
Query: 212      atcacttggtcgcgatgaacagcccccacttctgctc 248
                ||||||||||||||||||||||||||||| |||||||
Sbjct: 28737732 atcacttggtcgcgatgaacagcccccacctctgctc 28737696



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 388      tcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 439
                |||||||||||||| || ||||| || |||||||| |||| |||||||||||
Sbjct: 28737362 tcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatct 28737311

to top

>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431H09
          Length = 166886

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                   
Query: 212    atcacttggtcgcgatgaacagcccccacttctgctc 248
              ||||||||||||||||||||||||||||| |||||||
Sbjct: 120806 atcacttggtcgcgatgaacagcccccacctctgctc 120770



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                  
Query: 388    tcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 439
              |||||||||||||| || ||||| || |||||||| |||| |||||||||||
Sbjct: 120436 tcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatct 120385

to top

>dbj|AK102037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081D06, full
            insert sequence
          Length = 3221

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 212  atcacttggtcgcgatgaacagcccccacttctgctc 248
            ||||||||||||||||||||||||||||| |||||||
Sbjct: 2984 atcacttggtcgcgatgaacagcccccacctctgctc 2948



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 388  tcggtgcggtcttcggcgatgacgtcgtggaaaccggcatcctcaagcatct 439
            |||||||||||||| || ||||| || |||||||| |||| |||||||||||
Sbjct: 2614 tcggtgcggtcttcagcaatgacatcatggaaaccagcattctcaagcatct 2563

to top

>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 157107

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 124   cgatcctctttatttaattcttaa 147
             ||||||||||||||||||||||||
Sbjct: 32346 cgatcctctttatttaattcttaa 32369

to top

>dbj|AB196771.1| Atriplex nummularia AnPEAMT mRNA for phosphoethanolamine
            N-methyltransferase, complete cds
          Length = 1989

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 450  cttcacatnatggaggtcatagcctctctgcttgatgta 488
            |||||||| |||||| ||||| || ||||||||||||||
Sbjct: 1544 cttcacatcatggagatcatatcccctctgcttgatgta 1506

to top

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 288     gacgatgtcgtcgtagtcctcc 309
               ||||||||||||||||||||||
Sbjct: 1075622 gacgatgtcgtcgtagtcctcc 1075601

to top

>emb|Z35641.2|CEC38H2 Caenorhabditis elegans Cosmid C38H2, complete sequence
          Length = 31950

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 238   cacttctgctcgccggcggag 258
             |||||||||||||||||||||
Sbjct: 15748 cacttctgctcgccggcggag 15768

to top

>dbj|AB090883.1| Aster tripolium mRNA for phosphoethanolamine N-methyltransferase,
            complete cds
          Length = 1870

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 454  acatnatggaggtcatagcctctctgcttgatgtac 489
            |||| |||||| ||||| ||||| ||||||||||||
Sbjct: 1428 acatcatggagatcatatcctctttgcttgatgtac 1393

to top

>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence
          Length = 536165

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 287    tgacgatgtcgtcgtagtcct 307
              |||||||||||||||||||||
Sbjct: 377931 tgacgatgtcgtcgtagtcct 377951



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 287    tgacgatgtcgtcgtagtcct 307
              |||||||||||||||||||||
Sbjct: 320695 tgacgatgtcgtcgtagtcct 320715

to top

>gb|AC008285.7| Drosophila melanogaster clone BACR31P16, complete sequence
          Length = 177084

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 263    gcttcagcttcgcgctccacccgt 286
              |||||||||||||| |||||||||
Sbjct: 169464 gcttcagcttcgcgatccacccgt 169487

to top

>ref|XM_589053.2| PREDICTED: Bos taurus similar to zinc finger, MYND domain containing
            15 (LOC539735), mRNA
          Length = 2251

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  gccaggaaggcctccttgtt 341
            ||||||||||||||||||||
Sbjct: 1085 gccaggaaggcctccttgtt 1066

to top

>gb|AE007294.1| Sinorhizobium meliloti 1021 plasmid pSymA section 100 of 121 of the
            complete plasmid sequence
          Length = 9983

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  cgaagccgaagccgctctgc 168
            ||||||||||||||||||||
Sbjct: 5324 cgaagccgaagccgctctgc 5305

to top

>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete
           sequence
          Length = 181811

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 gtagtcctcctggctgaagt 319
           ||||||||||||||||||||
Sbjct: 711 gtagtcctcctggctgaagt 730

to top

>ref|XM_757246.1| Ustilago maydis 521 hypothetical protein (UM06192.1) partial mRNA
          Length = 3558

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  ccaacacacggccacagcat 113
           ||||||||||||||||||||
Sbjct: 632 ccaacacacggccacagcat 651

to top

>emb|Z81493.1|CEF01D5 Caenorhabditis elegans Cosmid F01D5, complete sequence
          Length = 36127

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   tccttgttcttctcggtctc 353
             ||||||||||||||||||||
Sbjct: 13295 tccttgttcttctcggtctc 13276

to top

>gb|AY223048.1| Schistosoma japonicum clone ZZD120 mRNA sequence
          Length = 1179

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  gcagccactgcaacaacaaa 82
           ||||||||||||||||||||
Sbjct: 878 gcagccactgcaacaacaaa 897

to top

>emb|AL953854.21| Human DNA sequence from clone RP11-211P14 on chromosome 9 Contains a
             pseudogene similar to part of a vomeronasal 2 family
             protein and a novel protein similar to contactin
             associated protein-like 3 (CNTNAP3), complete sequence
          Length = 157546

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tctttatttaattcttaacc 149
             ||||||||||||||||||||
Sbjct: 41424 tctttatttaattcttaacc 41405

to top

>emb|BX664730.2| Human DNA sequence from clone RP11-118H15 on chromosome 9 Contains a
              novel gene, complete sequence
          Length = 171251

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    tctttatttaattcttaacc 149
              ||||||||||||||||||||
Sbjct: 158902 tctttatttaattcttaacc 158883

to top

>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains
           eight novel pseudogenes, two novel genes and three CpG
           islands, complete sequence
          Length = 181647

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 tctttatttaattcttaacc 149
           ||||||||||||||||||||
Sbjct: 548 tctttatttaattcttaacc 567

to top

>emb|AL954685.6| Human DNA sequence from clone RP11-237M21 on chromosome 9, complete
             sequence
          Length = 130124

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   tctttatttaattcttaacc 149
             ||||||||||||||||||||
Sbjct: 70560 tctttatttaattcttaacc 70579

to top

>emb|AL953883.5| Human DNA sequence from clone RP11-246P17 on chromosome 9, complete
             sequence
          Length = 102894

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tctttatttaattcttaacc 149
             ||||||||||||||||||||
Sbjct: 81891 tctttatttaattcttaacc 81872

to top

>emb|AL590311.5| Human DNA sequence from clone RP11-20F16 on chromosome 9 Contains the
             5' end of the GDA gene for guanine deaminase and a CpG
             island, complete sequence
          Length = 131933

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   tcctctttatttaattctta 146
             ||||||||||||||||||||
Sbjct: 24338 tcctctttatttaattctta 24319

to top

>emb|AL353791.7| Human DNA sequence from clone RP11-475B17 on chromosome 9 Contains the 3'
              end of novel protein similar to contactin associated
              protein-like 3 (CNTNAP3) and a pseudogene similar to part
              of vomeronasal 2 family, complete sequence
          Length = 208233

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    tctttatttaattcttaacc 149
              ||||||||||||||||||||
Sbjct: 104698 tctttatttaattcttaacc 104717

to top

>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   cgctgctcggcggccagatc 214
             ||||||||||||||||||||
Sbjct: 96941 cgctgctcggcggccagatc 96960

to top

>gb|AC007995.23| Mus musculus, clone RP23-266E9, complete sequence
          Length = 204193

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    gtagtcctcctggctgaagt 319
              ||||||||||||||||||||
Sbjct: 185351 gtagtcctcctggctgaagt 185370

to top

>gb|AC010571.8| Drosophila melanogaster 3L BAC RP98-22O3 (Roswell Park Cancer Institute
             Drosophila BAC library) complete sequence
          Length = 169138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   cggcgatgacgtcgtggaaa 420
             ||||||||||||||||||||
Sbjct: 62502 cggcgatgacgtcgtggaaa 62521

to top

>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     tggcgtcgctgctcggcggc 208
               ||||||||||||||||||||
Sbjct: 1266679 tggcgtcgctgctcggcggc 1266698

to top

>gb|AC012049.8| Homo sapiens chromosome 10 clone RP11-76F22, complete sequence
          Length = 142656

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    atcctctttatttaattctt 145
              ||||||||||||||||||||
Sbjct: 125275 atcctctttatttaattctt 125294

to top

>ref|NM_143309.1| Drosophila melanogaster CG13972-RA (CG13972), mRNA
          Length = 1347

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 263  gcttcagcttcgcgctccacccgt 286
            |||||||||||||| |||||||||
Sbjct: 1094 gcttcagcttcgcgatccacccgt 1071

to top

>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence
          Length = 154939

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   atcctctttatttaattctt 145
             ||||||||||||||||||||
Sbjct: 76263 atcctctttatttaattctt 76282

to top

>ref|NM_064535.2| Caenorhabditis elegans F01D5.6 (F01D5.6) mRNA, complete cds
          Length = 1303

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  tccttgttcttctcggtctc 353
            ||||||||||||||||||||
Sbjct: 1109 tccttgttcttctcggtctc 1090

to top

>gb|AY194228.1| Enterobacter cloacae succinate dehydrogenase cytochrome b-556 subunit
            (sdhC), succinate dehydrogenase hydrophobic membrane
            anchor protein (sdhD), succinate dehydrogenase
            flavoprotein subunit (sdhA), and succinate dehydrogenase
            iron-sulfur protein (sdhB) genes, complete cds; and
            2-oxoglutarate dehydrogenase E1 component (sucA) gene,
            partial cds
          Length = 6771

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 235  ccccacttctgctcgccggcggag 258
            ||||||||||||||||||| ||||
Sbjct: 6123 ccccacttctgctcgccggaggag 6100

to top

>gb|AC007817.7|AC007817 Drosophila melanogaster, chromosome 3R, region 98A-98B, BAC clone
             BACR15D01, complete sequence
          Length = 180499

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   gcttcagcttcgcgctccacccgt 286
             |||||||||||||| |||||||||
Sbjct: 30801 gcttcagcttcgcgatccacccgt 30824

to top

>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 109003

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   ttccggatcatcgcgtagcgtggc 192
             |||| |||||||||||||||||||
Sbjct: 92074 ttcctgatcatcgcgtagcgtggc 92051

to top

>emb|BX545849.7| Mouse DNA sequence from clone RP23-232N16 on chromosome 4, complete
             sequence
          Length = 114104

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    gcaacaacaaatcacaccac 91
             ||||||||||||||||||||
Sbjct: 44262 gcaacaacaaatcacaccac 44243

to top

>gb|AY943952.1| Streptomyces sp. F11 plasmid pFP11, complete sequence
          Length = 35159

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   ccctctccaggaccctcagg 381
             ||||||||||||||||||||
Sbjct: 34562 ccctctccaggaccctcagg 34543

to top

>gb|AE003761.2| Drosophila melanogaster chromosome 3R, section 99 of 118 of the
             complete sequence
          Length = 224910

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   gcttcagcttcgcgctccacccgt 286
             |||||||||||||| |||||||||
Sbjct: 79987 gcttcagcttcgcgatccacccgt 80010

to top

>gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76 of 83 of the complete
              sequence
          Length = 294272

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    cggcgatgacgtcgtggaaa 420
              ||||||||||||||||||||
Sbjct: 130221 cggcgatgacgtcgtggaaa 130240

to top

>dbj|AP001803.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-100N3, complete
              sequences
          Length = 159372

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    tcctctttatttaattctta 146
              ||||||||||||||||||||
Sbjct: 103987 tcctctttatttaattctta 104006

to top

>emb|AL591855.11| Human DNA sequence from clone RP11-4C12 on chromosome 9, complete
            sequence
          Length = 153214

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  tctttatttaattcttaacc 149
            ||||||||||||||||||||
Sbjct: 6785 tctttatttaattcttaacc 6804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,905,549
Number of Sequences: 3902068
Number of extensions: 3905549
Number of successful extensions: 84714
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84438
Number of HSP's gapped (non-prelim): 274
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result