ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DLDH_PEA (P31023) Dihydrolipoyl dehydrogenase, mitochondrial pre... 29 3.1
2EBM_LILLO (Q5H7P5) Mannosylglycoprotein endo-beta-mannosidase (E... 28 9.0

>DLDH_PEA (P31023) Dihydrolipoyl dehydrogenase, mitochondrial precursor (EC|
           1.8.1.4) (Glycine cleavage system L protein)
           (Dihydrolipoamide dehydrogenase)
          Length = 501

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 137 PTVSEALKXACLQTHSKAIHI 75
           PT+SEA+K A + T+ K IHI
Sbjct: 481 PTMSEAIKEAAMATYDKPIHI 501



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>EBM_LILLO (Q5H7P5) Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152)|
           (Endo-beta-mannosidase) [Contains: Mannosylglycoprotein
           endo-beta-mannosidase 31 kDa subunit;
           Mannosylglycoprotein endo-beta-mannosidase 28 kDa
           subunit; Mannosylglycoprotein end
          Length = 952

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 75  YVDGFRMGLQASLLEGFTHSRGE 143
           Y+DG R+ +Q S+ EGF + +G+
Sbjct: 503 YLDGTRVYIQGSMWEGFANGKGD 525


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,043,789
Number of Sequences: 219361
Number of extensions: 236346
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 80,573,946
effective HSP length: 27
effective length of database: 74,651,199
effective search space used: 1791628776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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