>ABC3F_HUMAN (Q8IUX4) DNA dC->dU-editing enzyme APOBEC-3F (EC 3.5.4.-)|
           (Apolipoprotein B mRNA-editing enzyme catalytic
           polypeptide-like 3F)
          Length = 373

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 443 YSQWEAFIAGY-FD*FPNYGFVTDVLVVMFHTPVECCYPMICMKHFEML*RKSSRWQLYC 267
           YS+ + F+  Y FD   NY F+   L  +   P+E  YP I   HF+ L +   R + + 
Sbjct: 161 YSEGQPFMPWYKFD--DNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWL 218

Query: 266 CYSCD 252
           C++ +
Sbjct: 219 CFTME 223

>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa|
           polypeptide (EC 2.7.7.6) (ABC27)
          Length = 215

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 159 FVYEGNNSPLQEEIISSFPP*TLLAATYAVAITGVAAVELPPR--RLSS 299
           FVY+ N +P   +++ S PP T+     A  +  +   EL P+  RLSS
Sbjct: 110 FVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSS 158

>DNAA_RICTY (Q68WD8) Chromosomal replication initiator protein dnaA|
          Length = 463

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
 Frame = +3

Query: 39  YRRRLLSPKFR*VNQNVSTTENI*TCTQTNKHSEWLSS------LQFVYEGNNSPLQEEI 200
           Y   L +  F  VN   S+   +  C  TN   +W+ S      LQ     NN+    EI
Sbjct: 30  YGETLYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYAMVILQLFQHYNNAIKSIEI 89

Query: 201 ISSFPP*TLLAATYAVAITGVAAVELPPRRLSSKHFKVLHTNHWVATLD 347
           I           T  V  T    +ELP +  S+     L++ + ++TLD
Sbjct: 90  I-----------TKEVPGTTQTVIELPTKTFSNISNSALNSENTISTLD 127

>ARL2_HUMAN (P36404) ADP-ribosylation factor-like protein 2|
          Length = 184

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 636 HHXRWC*QGCKALCGRALVPG 574
           HH  WC QGC A+ G  L+PG
Sbjct: 150 HH--WCIQGCSAVTGENLLPG 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,472,191
Number of Sequences: 219361
Number of extensions: 1876993
Number of successful extensions: 4075
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4072
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)