ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC004848.1| Homo sapiens PAC clone RP4-649P17 from 7, complet... 46 0.15
2gb|AC000389.1|AC000389 Genomic sequence from Human 17, complete ... 44 0.59
3gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08,... 44 0.59
4ref|NM_184249.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
5gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, com... 42 2.3
6emb|CR936842.21| Mouse DNA sequence from clone CH29-189K17 on ch... 42 2.3
7emb|AL357078.35| Human DNA sequence from clone RP4-535B20 on chr... 42 2.3
8gb|AC092695.8| Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cance... 42 2.3
9emb|AL646054.20| Mouse DNA sequence from clone RP23-157N11 on ch... 42 2.3
10emb|AL671997.10| Mouse DNA sequence from clone DN-396O20 on chro... 42 2.3
11gb|AC099680.2| Homo sapiens chromosome 1 clone RP4-700A9, comple... 42 2.3
12gb|AC025505.11| Homo sapiens, clone RP11-651N3, complete sequence 42 2.3
13gb|AC007485.10| Homo sapiens chromosome 17, clone RP11-257O5, co... 42 2.3
14emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, co... 42 2.3
15emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chro... 42 2.3
16gb|AY479964.1| Juglans nigra microsatellite wga332 sequence 40 9.2
17gb|AC168117.2| Mus musculus BAC clone RP23-461G13 from chromosom... 40 9.2
18gb|AC150492.2| Bos taurus BAC CH240-454H24 (Children's Hospital... 40 9.2
19gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome... 40 9.2
20ref|XM_451414.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A09471g ... 40 9.2
21gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, com... 40 9.2
22gb|AC153376.10| Mus musculus 6 BAC RP23-210L10 (Roswell Park Can... 40 9.2
23gb|AC156399.9| Mus musculus 6 BAC RP24-238J9 (Roswell Park Cance... 40 9.2
24gb|AC182234.3| Pan troglodytes BAC clone CH251-487I22 from chrom... 40 9.2
25gb|AC129336.4| Mus musculus BAC clone RP23-113I7 from chromosome... 40 9.2
26emb|CT010434.8| Mouse DNA sequence from clone RP23-225H9 on chro... 40 9.2
27gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosom... 40 9.2
28emb|CR956383.8| Pig DNA sequence from clone CH242-271L5 on chrom... 40 9.2
29gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, comple... 40 9.2
30gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence 40 9.2
31emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 i... 40 9.2
32emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on ch... 40 9.2
33gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 9.2
34emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 9.2
35dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 9.2
36gb|AC182468.2| Pan troglodytes BAC clone CH251-483N21 from chrom... 40 9.2
37gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete se... 40 9.2
38gb|AC092656.1| Homo sapiens BAC clone RP11-455G16 from 4, comple... 40 9.2
39gb|AC019089.6| Homo sapiens BAC clone RP11-370L14 from 4, comple... 40 9.2
40gb|AC024722.5| Homo sapiens BAC clone RP11-277E23 from 4, comple... 40 9.2
41dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
42gb|AC141273.2| Homo sapiens chromosome 16 clone RP11-143N13, com... 40 9.2
43gb|AC141053.2| Homo sapiens chromosome 16 clone CTD-3076M17, com... 40 9.2
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
45gb|AC073506.11|AC073506 Arabidopsis thaliana chromosome 1 BAC F1... 40 9.2
46gb|AC017076.14| Homo sapiens BAC clone RP11-439M11 from 2, compl... 40 9.2
47gb|AC026336.20| Homo sapiens 12 BAC RP11-143E21 (Roswell Park Ca... 40 9.2
48dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
49emb|BX004790.9| Zebrafish DNA sequence from clone CH211-215J7 in... 40 9.2
50dbj|AK071957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
51emb|CT963111.1| Medicago truncatula chromosome 5 clone mth2-43h1... 40 9.2
52emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in... 40 9.2
53gb|U14003.1|ECOUW93 Escherichia coli K-12 chromosomal region fro... 40 9.2
54gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, com... 40 9.2
55gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
56emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559... 40 9.2
57gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, compl... 40 9.2
58gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 9.2
59emb|AL683857.8| Mouse DNA sequence from clone RP23-46O18 on chro... 40 9.2
60gb|AF326777.3| Shigella flexneri 2a SRL pathogenicity island, co... 40 9.2
61gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, co... 40 9.2
62gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p... 40 9.2
63gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 9.2
64dbj|AB022281.1| Oryzias latipes gene for soluble guanylyl cyclas... 40 9.2
65gb|M63115.1|ECOFECIR E.coli fecI and fecR genes, complete cds, a... 40 9.2 
>gb|AC004848.1| Homo sapiens PAC clone RP4-649P17 from 7, complete sequence
          Length = 135214

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 81     caaaatgtttctactactgaaaa 103
              |||||||||||||||||||||||
Sbjct: 111110 caaaatgtttctactactgaaaa 111088
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>gb|AC000389.1|AC000389 Genomic sequence from Human 17, complete sequence
          Length = 83024

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 88    tttctactactgaaaacatatgaacttgta 117
             |||||||||||| || ||||||||||||||
Sbjct: 33022 tttctactactggaagcatatgaacttgta 33051
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>gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08, complete sequence
          Length = 218698

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 190    aagaagaaatcatttcttcttt 211
              ||||||||||||||||||||||
Sbjct: 215817 aagaagaaatcatttcttcttt 215838
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>ref|NM_184249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 504 gcatcctccttagccacagctgcaa 528
           |||| ||||||||||||||||||||
Sbjct: 86  gcattctccttagccacagctgcaa 62
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>gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, complete sequence
          Length = 212109

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 360    catcaccaccaaaacatctgtaaca 384
              |||||||||||||||| ||||||||
Sbjct: 203707 catcaccaccaaaacaactgtaaca 203731
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>emb|CR936842.21| Mouse DNA sequence from clone CH29-189K17 on chromosome 1, complete
              sequence
          Length = 208212

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 109    gaacttgtacacaaacaaaca 129
              |||||||||||||||||||||
Sbjct: 202487 gaacttgtacacaaacaaaca 202467
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>emb|AL357078.35| Human DNA sequence from clone RP4-535B20 on chromosome 1 Contains part of
              a novel gene, a novel gene, a ribosomal protein S24 (RPS24)
              pseudogene, a mitochondrial ribosomal protein S21 (MRPS21)
              pseudogene and a CpG island, complete sequence
          Length = 147603

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     aggttaatcaaaatgtttcta 93
              |||||||||||||||||||||
Sbjct: 146243 aggttaatcaaaatgtttcta 146263
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>gb|AC092695.8| Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166471

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 373    acatctgtaacaaagccatag 393
              |||||||||||||||||||||
Sbjct: 112812 acatctgtaacaaagccatag 112832
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>emb|AL646054.20| Mouse DNA sequence from clone RP23-157N11 on chromosome 1 Contains the
             Cd28 gene for CD28 antigen, a lactate dehydrogenase
             pseudogene, a ribosomal protein S6 (Rps6) pseudogene,  a
             mortality factor 4 (MORF4) pseudogene, a eukaryotic
             translation initiation factor 4A1 (Eif4a1) pseudogene, the
             3' end of a variant of the Ctla4 gene for cytotoxic
             T-lymphocyte-associated protein 4 and two novel genes,
             complete sequence
          Length = 202305

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   gaacttgtacacaaacaaaca 129
             |||||||||||||||||||||
Sbjct: 13389 gaacttgtacacaaacaaaca 13409
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>emb|AL671997.10| Mouse DNA sequence from clone DN-396O20 on chromosome 1 Contains a
             ribosomal protein S6 (Rps6) pseudogene, complete sequence
          Length = 69346

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   gaacttgtacacaaacaaaca 129
             |||||||||||||||||||||
Sbjct: 59747 gaacttgtacacaaacaaaca 59767
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>gb|AC099680.2| Homo sapiens chromosome 1 clone RP4-700A9, complete sequence
          Length = 89056

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 73  aggttaatcaaaatgtttcta 93
           |||||||||||||||||||||
Sbjct: 640 aggttaatcaaaatgtttcta 660
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>gb|AC025505.11| Homo sapiens, clone RP11-651N3, complete sequence
          Length = 166426

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     cccaaaattcagataggttaa 79
              |||||||||||||||||||||
Sbjct: 159021 cccaaaattcagataggttaa 159001
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>gb|AC007485.10| Homo sapiens chromosome 17, clone RP11-257O5, complete sequence
          Length = 164731

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    cccaaaattcagataggttaa 79
             |||||||||||||||||||||
Sbjct: 45426 cccaaaattcagataggttaa 45406
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>emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, complete sequence
          Length = 229574

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 88    tttctactactgaaaacatat 108
             |||||||||||||||||||||
Sbjct: 88531 tttctactactgaaaacatat 88551
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>emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chromosome 2, complete
              sequence
          Length = 189540

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 357    aaacatcaccaccaaaacatc 377
              |||||||||||||||||||||
Sbjct: 163323 aaacatcaccaccaaaacatc 163343
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>gb|AY479964.1| Juglans nigra microsatellite wga332 sequence
          Length = 350

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 tcgttgcaatttgtatatga 169
           ||||||||||||||||||||
Sbjct: 296 tcgttgcaatttgtatatga 315
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>gb|AC168117.2| Mus musculus BAC clone RP23-461G13 from chromosome 17, complete
             sequence
          Length = 169205

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   ttcttcaaagcatttcaaag 312
             ||||||||||||||||||||
Sbjct: 47220 ttcttcaaagcatttcaaag 47239
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>gb|AC150492.2| Bos taurus  BAC CH240-454H24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 185197

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    catttcttcttttcctcctt 219
              ||||||||||||||||||||
Sbjct: 180857 catttcttcttttcctcctt 180838
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>gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome 7, complete sequence
          Length = 232770

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   gaaacatcaccaccaaaaca 375
             ||||||||||||||||||||
Sbjct: 41248 gaaacatcaccaccaaaaca 41229
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>ref|XM_451414.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A09471g predicted mRNA
          Length = 4521

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  cctctccaagaagaaatcat 202
            ||||||||||||||||||||
Sbjct: 3764 cctctccaagaagaaatcat 3745
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>gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, complete sequence
          Length = 194261

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   tatgaacttgtacacaaaca 125
             ||||||||||||||||||||
Sbjct: 22215 tatgaacttgtacacaaaca 22196
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>gb|AC153376.10| Mus musculus 6 BAC RP23-210L10 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203455

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    acaactcacctctccaagaa 194
              ||||||||||||||||||||
Sbjct: 110898 acaactcacctctccaagaa 110917
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>gb|AC156399.9| Mus musculus 6 BAC RP24-238J9 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 136911

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   acaactcacctctccaagaa 194
             ||||||||||||||||||||
Sbjct: 10171 acaactcacctctccaagaa 10190
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>gb|AC182234.3| Pan troglodytes BAC clone CH251-487I22 from chromosome x, complete
             sequence
          Length = 188826

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 637   gatctcttgtggcagtgtcttggc 660
             |||||||| |||||||||||||||
Sbjct: 36659 gatctcttttggcagtgtcttggc 36636
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>gb|AC129336.4| Mus musculus BAC clone RP23-113I7 from chromosome 10, complete sequence
          Length = 215437

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    ttcttcttttcctccttaaa 222
              ||||||||||||||||||||
Sbjct: 170330 ttcttcttttcctccttaaa 170311
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>emb|CT010434.8| Mouse DNA sequence from clone RP23-225H9 on chromosome 17, complete
              sequence
          Length = 218000

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 354    atgaaacatcaccaccaaaa 373
              ||||||||||||||||||||
Sbjct: 172161 atgaaacatcaccaccaaaa 172180
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>gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosome 7, complete sequence
          Length = 217404

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    gaaacatcaccaccaaaaca 375
              ||||||||||||||||||||
Sbjct: 184027 gaaacatcaccaccaaaaca 184008
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>emb|CR956383.8| Pig DNA sequence from clone CH242-271L5 on chromosome 17, complete
              sequence
          Length = 163007

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 192    gaagaaatcatttcttcttttcct 215
              ||||||||| ||||||||||||||
Sbjct: 103931 gaagaaatcttttcttcttttcct 103908
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>gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, complete sequence
          Length = 214229

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ctcacctctccaagaagaaa 198
             ||||||||||||||||||||
Sbjct: 20293 ctcacctctccaagaagaaa 20274
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>gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence
          Length = 165901

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 96   actgaaaacatatgaacttgtacacaaa 123
            ||||| ||||||| ||||||||||||||
Sbjct: 9694 actgataacatataaacttgtacacaaa 9721
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>emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 in linkage group 7,
              complete sequence
          Length = 197310

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    acacaaacaaacaagcacag 136
              ||||||||||||||||||||
Sbjct: 165399 acacaaacaaacaagcacag 165418
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>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the
             5' end of the gene for phosphoinositol 3-phosphate-binding
             protein-3 (PEPP3), two novel genes, the  PPP1R15B gene for
             protein phosphatase 1, regulatory (inhibitor) subunit 15B,
             the PIK3C2B gene for phosphoinositide-3-kinase, class 2,
             beta polypeptide, a small nuclear ribonucleoprotein
             polypeptide F (SNRPF) pseudogene and three CpG islands,
             complete sequence
          Length = 167079

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 605   ttgcacccttgtcagcacca 624
             ||||||||||||||||||||
Sbjct: 26112 ttgcacccttgtcagcacca 26131
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 481     aagcagtgagctggcgctgacggg 504
               ||||||||||||||| ||||||||
Sbjct: 4515203 aagcagtgagctggccctgacggg 4515226
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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    cctctccaagaagaaatcat 202
              ||||||||||||||||||||
Sbjct: 828021 cctctccaagaagaaatcat 828040
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 481     aagcagtgagctggcgctgacggg 504
               ||||||||||||||| ||||||||
Sbjct: 4521860 aagcagtgagctggccctgacggg 4521883
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>gb|AC182468.2| Pan troglodytes BAC clone CH251-483N21 from chromosome x, complete
             sequence
          Length = 193874

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 637   gatctcttgtggcagtgtcttggc 660
             |||||||| |||||||||||||||
Sbjct: 23470 gatctcttttggcagtgtcttggc 23447
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>gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete sequence
          Length = 165658

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tgtacacaaacaaacaagca 133
             ||||||||||||||||||||
Sbjct: 42899 tgtacacaaacaaacaagca 42918
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>gb|AC092656.1| Homo sapiens BAC clone RP11-455G16 from 4, complete sequence
          Length = 191840

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   aagaagaaatcatttcttct 209
             ||||||||||||||||||||
Sbjct: 74993 aagaagaaatcatttcttct 75012
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>gb|AC019089.6| Homo sapiens BAC clone RP11-370L14 from 4, complete sequence
          Length = 177160

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 72     taggttaatcaaaatgtttctact 95
              |||| |||||||||||||||||||
Sbjct: 177044 taggataatcaaaatgtttctact 177067
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>gb|AC024722.5| Homo sapiens BAC clone RP11-277E23 from 4, complete sequence
          Length = 117928

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 72   taggttaatcaaaatgtttctact 95
            |||| |||||||||||||||||||
Sbjct: 1882 taggataatcaaaatgtttctact 1905
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 258      ggagtagcagcagtagagct 277
                ||||||||||||||||||||
Sbjct: 27161035 ggagtagcagcagtagagct 27161016
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>gb|AC141273.2| Homo sapiens chromosome 16 clone RP11-143N13, complete sequence
          Length = 101561

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 196    aaatcatttcttcttttcctcctt 219
              ||||||||||| ||||||||||||
Sbjct: 100612 aaatcatttctccttttcctcctt 100589
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>gb|AC141053.2| Homo sapiens chromosome 16 clone CTD-3076M17, complete sequence
          Length = 98702

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 196   aaatcatttcttcttttcctcctt 219
             ||||||||||| ||||||||||||
Sbjct: 18533 aaatcatttctccttttcctcctt 18510
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     ctccttagccacagctgcaa 528
               ||||||||||||||||||||
Sbjct: 1757650 ctccttagccacagctgcaa 1757669
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>gb|AC073506.11|AC073506 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete
             sequence
          Length = 55095

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   cacctagaagactttcttca 299
             ||||||||||||||||||||
Sbjct: 46605 cacctagaagactttcttca 46624
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>gb|AC017076.14| Homo sapiens BAC clone RP11-439M11 from 2, complete sequence
          Length = 118808

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   catttcttcttttcctcctt 219
             ||||||||||||||||||||
Sbjct: 29742 catttcttcttttcctcctt 29723
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>gb|AC026336.20| Homo sapiens 12 BAC RP11-143E21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 169758

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   tttcctccttaaaccctgct 229
             ||||||||||||||||||||
Sbjct: 43905 tttcctccttaaaccctgct 43886
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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504H10
          Length = 143515

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 509    ctccttagccacagctgcaa 528
              ||||||||||||||||||||
Sbjct: 99993  ctccttagccacagctgcaa 100012
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>emb|BX004790.9| Zebrafish DNA sequence from clone CH211-215J7 in linkage group 7,
             complete sequence
          Length = 209666

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 301   agcatttcaaagtgcttcatacaa 324
             ||||||| ||||||||||||||||
Sbjct: 59061 agcattttaaagtgcttcatacaa 59084
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>dbj|AK071957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082M02, full
            insert sequence
          Length = 3542

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  ggagtagcagcagtagagct 277
            ||||||||||||||||||||
Sbjct: 2414 ggagtagcagcagtagagct 2395
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>emb|CT963111.1| Medicago truncatula chromosome 5 clone mth2-43h1, COMPLETE SEQUENCE
          Length = 120939

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aatcaaaatgtttctactac 97
             ||||||||||||||||||||
Sbjct: 15932 aatcaaaatgtttctactac 15951
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>emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in linkage group 19,
             complete sequence
          Length = 72609

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tacacaaacaaacaagcaca 135
             ||||||||||||||||||||
Sbjct: 35892 tacacaaacaaacaagcaca 35911
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>gb|U14003.1|ECOUW93 Escherichia coli K-12 chromosomal region from 92.8 to 00.1 minutes
          Length = 338534

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 481    aagcagtgagctggcgctgacggg 504
              ||||||||||||||| ||||||||
Sbjct: 208014 aagcagtgagctggccctgacggg 208037
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>gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, complete sequence
          Length = 206641

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    tatgaacttgtacacaaaca 125
              ||||||||||||||||||||
Sbjct: 166015 tatgaacttgtacacaaaca 165996
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 258      ggagtagcagcagtagagct 277
                ||||||||||||||||||||
Sbjct: 27086635 ggagtagcagcagtagagct 27086616
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>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145816

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ggagtagcagcagtagagct 277
             ||||||||||||||||||||
Sbjct: 99934 ggagtagcagcagtagagct 99915
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>gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, complete sequence
          Length = 159923

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    atctggttcacaggcaagca 485
              ||||||||||||||||||||
Sbjct: 112079 atctggttcacaggcaagca 112060
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 481     aagcagtgagctggcgctgacggg 504
               ||||||||||||||| ||||||||
Sbjct: 4028786 aagcagtgagctggccctgacggg 4028809
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>emb|AL683857.8| Mouse DNA sequence from clone RP23-46O18 on chromosome X, complete
              sequence
          Length = 238677

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    tcatttcttcttttcctcct 218
              ||||||||||||||||||||
Sbjct: 159057 tcatttcttcttttcctcct 159076
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>gb|AF326777.3| Shigella flexneri 2a SRL pathogenicity island, complete sequence
          Length = 66715

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 481   aagcagtgagctggcgctgacggg 504
             ||||||||||||||| ||||||||
Sbjct: 42210 aagcagtgagctggccctgacggg 42233
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>gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, complete sequence
          Length = 185933

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 276    ctgccacctagaagactttcttca 299
              ||||||||||||| ||||||||||
Sbjct: 122071 ctgccacctagaaaactttcttca 122094
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>gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p, complete sequence
          Length = 151927

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 197   aatcatttcttcttttcctcctta 220
             ||||||||||||||| ||||||||
Sbjct: 64508 aatcatttcttctttgcctcctta 64531
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 481     aagcagtgagctggcgctgacggg 504
               ||||||||||||||| ||||||||
Sbjct: 4737294 aagcagtgagctggccctgacggg 4737317
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>dbj|AB022281.1| Oryzias latipes gene for soluble guanylyl cyclase beta subunit,
            complete cds
          Length = 17366

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  tcttcaaagcatttcaaagt 313
            ||||||||||||||||||||
Sbjct: 2953 tcttcaaagcatttcaaagt 2972
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>gb|M63115.1|ECOFECIR E.coli fecI and fecR genes, complete cds, and fecA gene, 5' end
          Length = 4074

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 481  aagcagtgagctggcgctgacggg 504
            ||||||||||||||| ||||||||
Sbjct: 2288 aagcagtgagctggccctgacggg 2265


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,194,286
Number of Sequences: 3902068
Number of extensions: 8194286
Number of successful extensions: 166195
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165820
Number of HSP's gapped (non-prelim): 375
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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