ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal22m07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_481720.1| Oryza sativa (japonica cultivar-group), mRNA 103 5e-19
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
3dbj|AP005866.2| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4ref|XM_475183.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
5gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
7dbj|AK108808.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
8emb|AL109806.22|HSJ1153D9 Human DNA sequence from clone RP5-1153... 44 0.38
9emb|CR589882.5| Zebrafish DNA sequence from clone CH211-221N23 i... 44 0.38
10gb|AY873916.1| Tribolium castaneum chitinase 5 (Chi-5) mRNA, com... 42 1.5
11emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment ... 42 1.5
12ref|NM_001039428.1| Tribolium castaneum chitinase 5 (Chi-5), mRNA 42 1.5
13ref|XM_514951.1| PREDICTED: Pan troglodytes DIP2-like protein (L... 40 5.9
14ref|XM_531509.1| PREDICTED: Pan troglodytes LOC474062 (LOC474062... 40 5.9
15ref|NM_001031159.1| Gallus gallus DEAH (Asp-Glu-Ala-His) box pol... 40 5.9
16ref|XM_424006.1| PREDICTED: Gallus gallus similar to Putative pr... 40 5.9
17emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chr... 40 5.9
18emb|CR352342.9| Zebrafish DNA sequence from clone CH211-134H7 in... 40 5.9
19emb|AL355572.13| Human DNA sequence from clone RP11-366I22 on ch... 40 5.9
20emb|AJ851741.1| Gallus gallus mRNA for hypothetical protein, clo... 40 5.9
21gb|AC022272.6| Homo sapiens BAC clone RP11-563E2 from 4, complet... 40 5.9
22dbj|BS000244.1| Pan troglodytes chromosome 22 clone:PTB-070F15, ... 40 5.9
23dbj|BS000243.1| Pan troglodytes chromosome 22 clone:CH251-388O03... 40 5.9
24gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, comple... 40 5.9
25dbj|AP000336.2| Homo sapiens genomic DNA, chromosome 21 clone:CM... 40 5.9
26dbj|AP001760.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.9
27dbj|AP004147.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.9
28dbj|AP000215.1| Homo sapiens genomic DNA, chromosome 21q22.3-ter... 40 5.9

>ref|XM_481720.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3201

 Score =  103 bits (52), Expect = 5e-19
 Identities = 115/137 (83%)
 Strand = Plus / Minus

                                                                        
Query: 299  tacaatgcagctcgtccttggcccttgggcagcttcttcgaagcagcgtcgtccacatct 358
            |||||||||||||||||||||||||| ||||||||||| |   ||| |||||| || |||
Sbjct: 3200 tacaatgcagctcgtccttggcccttaggcagcttcttagtcccagtgtcgtcaacgtct 3141

                                                                        
Query: 359  tttagttggtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacc 418
            |||||||| || ||||| || || ||||| |||||||| ||  |||| |||||||| |||
Sbjct: 3140 tttagttgataatagtgtggcgctatttctaccagccagtcgggcttcagttccgttacc 3081

                             
Query: 419  tgacncatgtactcttt 435
            |||| ||| || |||||
Sbjct: 3080 tgacgcatatattcttt 3064



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 299      tacaatgcagctcgtccttggcccttgggcagcttctt 336
                |||||||||||||||||||||||||| |||||||||||
Sbjct: 14974527 tacaatgcagctcgtccttggcccttaggcagcttctt 14974564



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                            
Query: 346      gtcgtccacatcttttagttggtagtagtgcggggcaatttccaccagccattcangctt 405
                |||||| || ||||||||||| || ||||| || || ||||| |||||||| ||  ||||
Sbjct: 14974671 gtcgtcaacgtcttttagttgataatagtgtggcgctatttctaccagccagtcgggctt 14974730

                               
Query: 406      nagttccgtcacctg 420
                 |||||||| |||||
Sbjct: 14974731 cagttccgttacctg 14974745



to top

>dbj|AP005866.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0076O03
          Length = 140823

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 299    tacaatgcagctcgtccttggcccttgggcagcttctt 336
              |||||||||||||||||||||||||| |||||||||||
Sbjct: 107056 tacaatgcagctcgtccttggcccttaggcagcttctt 107093



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                          
Query: 346    gtcgtccacatcttttagttggtagtagtgcggggcaatttccaccagccattcangctt 405
              |||||| || ||||||||||| || ||||| || || ||||| |||||||| ||  ||||
Sbjct: 107200 gtcgtcaacgtcttttagttgataatagtgtggcgctatttctaccagccagtcgggctt 107259

                             
Query: 406    nagttccgtcacctg 420
               |||||||| |||||
Sbjct: 107260 cagttccgttacctg 107274



to top

>ref|XM_475183.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3213

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 367  gtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacctgacncat 426
            |||||||||||| || || ||||||||||| ||  |||| || ||||||||||| | |||
Sbjct: 3084 gtagtagtgcggcgcgatctccaccagccactccggcttgagctccgtcacctgcctcat 3025

                  
Query: 427  gtactc 432
            ||||||
Sbjct: 3024 gtactc 3019



to top

>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01,
             complete sequence
          Length = 88352

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                         
Query: 367   gtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacctgacncat 426
             |||||||||||| || || ||||||||||| ||  |||| || ||||||||||| | |||
Sbjct: 33731 gtagtagtgcggcgcgatctccaccagccactccggcttgagctccgtcacctgcctcat 33790

                   
Query: 427   gtactc 432
             ||||||
Sbjct: 33791 gtactc 33796



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                            
Query: 367      gtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacctgacncat 426
                |||||||||||| || || ||||||||||| ||  |||| || ||||||||||| | |||
Sbjct: 18728328 gtagtagtgcggcgcgatctccaccagccactccggcttgagctccgtcacctgcctcat 18728387

                      
Query: 427      gtactc 432
                ||||||
Sbjct: 18728388 gtactc 18728393



to top

>dbj|AK108808.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D04, full
            insert sequence
          Length = 3427

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 367  gtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacctgacncat 426
            |||||||||||| || || |||||| |||| ||  |||| || ||||||||||| | |||
Sbjct: 3217 gtagtagtgcggcgcgatctccaccggccactccggcttgagctccgtcacctgcctcat 3158

                  
Query: 427  gtactc 432
            ||||||
Sbjct: 3157 gtactc 3152



to top

>emb|AL109806.22|HSJ1153D9 Human DNA sequence from clone RP5-1153D9 on chromosome 20 Contains
            the C20orf43 gene, the C20orf106 gene, the C20orf107 gene
            and the C20orf105 gene for a novel protein similar to
            beta 1,6-N-acetylglucosaminyltransferase, complete
            sequence
          Length = 94121

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 19   acaacacagtggtaggcactgt 40
            ||||||||||||||||||||||
Sbjct: 6429 acaacacagtggtaggcactgt 6408



to top

>emb|CR589882.5| Zebrafish DNA sequence from clone CH211-221N23 in linkage group 13,
             complete sequence
          Length = 205759

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 236   aaactaaactgtttacacaaca 257
             ||||||||||||||||||||||
Sbjct: 49829 aaactaaactgtttacacaaca 49808



to top

>gb|AY873916.1| Tribolium castaneum chitinase 5 (Chi-5) mRNA, complete cds
          Length = 1241

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 230  tgtttgaaactaaactgttta 250
            |||||||||||||||||||||
Sbjct: 1221 tgtttgaaactaaactgttta 1201



to top

>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24
          Length = 304250

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 338    gaagcagcgtcgtccacatct 358
              |||||||||||||||||||||
Sbjct: 274260 gaagcagcgtcgtccacatct 274240



to top

>ref|NM_001039428.1| Tribolium castaneum chitinase 5 (Chi-5), mRNA
          Length = 1241

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 230  tgtttgaaactaaactgttta 250
            |||||||||||||||||||||
Sbjct: 1221 tgtttgaaactaaactgttta 1201



to top

>ref|XM_514951.1| PREDICTED: Pan troglodytes DIP2-like protein (LOC458619), mRNA
          Length = 17890

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aaaacaagagtagaaagaaa 211
             ||||||||||||||||||||
Sbjct: 12110 aaaacaagagtagaaagaaa 12091



to top

>ref|XM_531509.1| PREDICTED: Pan troglodytes LOC474062 (LOC474062), mRNA
          Length = 22126

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aaaacaagagtagaaagaaa 211
             ||||||||||||||||||||
Sbjct: 15152 aaaacaagagtagaaagaaa 15133



to top

>ref|NM_001031159.1| Gallus gallus DEAH (Asp-Glu-Ala-His) box polypeptide 15 (DHX15), mRNA
          Length = 2892

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 377  ggggcaatttccaccagccattca 400
            |||||||||| |||||||||||||
Sbjct: 2331 ggggcaattttcaccagccattca 2308



to top

>ref|XM_424006.1| PREDICTED: Gallus gallus similar to Putative pre-mRNA splicing
           factor RNA helicase (DEAH box protein 15) (LOC426349),
           partial mRNA
          Length = 771

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 377 ggggcaatttccaccagccattca 400
           |||||||||| |||||||||||||
Sbjct: 213 ggggcaattttcaccagccattca 190



to top

>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete
              sequence
          Length = 202526

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    aagaaaaaagccatgtgatc 225
              ||||||||||||||||||||
Sbjct: 101690 aagaaaaaagccatgtgatc 101671



to top

>emb|CR352342.9| Zebrafish DNA sequence from clone CH211-134H7 in linkage group 12,
              complete sequence
          Length = 186937

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     ggtaggcactgtatgtttgataac 52
              |||| |||||||||||||||||||
Sbjct: 186100 ggtatgcactgtatgtttgataac 186077



to top

>emb|AL355572.13| Human DNA sequence from clone RP11-366I22 on chromosome 13, complete
             sequence
          Length = 81324

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     aatgccaatgattgatacaa 22
             ||||||||||||||||||||
Sbjct: 23516 aatgccaatgattgatacaa 23497



to top

>emb|AJ851741.1| Gallus gallus mRNA for hypothetical protein, clone 24b10
          Length = 2892

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 377  ggggcaatttccaccagccattca 400
            |||||||||| |||||||||||||
Sbjct: 2331 ggggcaattttcaccagccattca 2308



to top

>gb|AC022272.6| Homo sapiens BAC clone RP11-563E2 from 4, complete sequence
          Length = 186535

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   ataggatgtaatctaaaaca 197
             ||||||||||||||||||||
Sbjct: 27603 ataggatgtaatctaaaaca 27622



to top

>dbj|BS000244.1| Pan troglodytes chromosome 22 clone:PTB-070F15, map 22, complete
             sequences
          Length = 155086

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aaaacaagagtagaaagaaa 211
             ||||||||||||||||||||
Sbjct: 12585 aaaacaagagtagaaagaaa 12566



to top

>dbj|BS000243.1| Pan troglodytes chromosome 22 clone:CH251-388O03, map 22, complete
              sequences
          Length = 182350

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    aaaacaagagtagaaagaaa 211
              ||||||||||||||||||||
Sbjct: 164113 aaaacaagagtagaaagaaa 164094



to top

>gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, complete sequence
          Length = 172011

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    aagaaaaaagccatgtgatc 225
              ||||||||||||||||||||
Sbjct: 125174 aagaaaaaagccatgtgatc 125193



to top

>dbj|AP000336.2| Homo sapiens genomic DNA, chromosome 21 clone:CMP21-S588, complete
             sequence
          Length = 37459

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aaaacaagagtagaaagaaa 211
             ||||||||||||||||||||
Sbjct: 35884 aaaacaagagtagaaagaaa 35865



to top

>dbj|AP001760.1| Homo sapiens genomic DNA, chromosome 21q, section 104/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    aaaacaagagtagaaagaaa 211
              ||||||||||||||||||||
Sbjct: 121360 aaaacaagagtagaaagaaa 121341



to top

>dbj|AP004147.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-785K22, complete
             sequence
          Length = 97120

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   agaaagaaaaaagccatgtg 222
             ||||||||||||||||||||
Sbjct: 69329 agaaagaaaaaagccatgtg 69310



to top

>dbj|AP000215.1| Homo sapiens genomic DNA, chromosome 21q22.3-ter, Ter region, clone
             f27E1-T1136, segment 1/4, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aaaacaagagtagaaagaaa 211
             ||||||||||||||||||||
Sbjct: 61901 aaaacaagagtagaaagaaa 61882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,576,984
Number of Sequences: 3902068
Number of extensions: 3576984
Number of successful extensions: 59922
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59855
Number of HSP's gapped (non-prelim): 67
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top