| Clone Name | rbaal22m07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_481720.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3201 Score = 103 bits (52), Expect = 5e-19 Identities = 115/137 (83%) Strand = Plus / Minus Query: 299 tacaatgcagctcgtccttggcccttgggcagcttcttcgaagcagcgtcgtccacatct 358 |||||||||||||||||||||||||| ||||||||||| | ||| |||||| || ||| Sbjct: 3200 tacaatgcagctcgtccttggcccttaggcagcttcttagtcccagtgtcgtcaacgtct 3141 Query: 359 tttagttggtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacc 418 |||||||| || ||||| || || ||||| |||||||| || |||| |||||||| ||| Sbjct: 3140 tttagttgataatagtgtggcgctatttctaccagccagtcgggcttcagttccgttacc 3081 Query: 419 tgacncatgtactcttt 435 |||| ||| || ||||| Sbjct: 3080 tgacgcatatattcttt 3064
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 299 tacaatgcagctcgtccttggcccttgggcagcttctt 336 |||||||||||||||||||||||||| ||||||||||| Sbjct: 14974527 tacaatgcagctcgtccttggcccttaggcagcttctt 14974564 Score = 50.1 bits (25), Expect = 0.006 Identities = 62/75 (82%) Strand = Plus / Plus Query: 346 gtcgtccacatcttttagttggtagtagtgcggggcaatttccaccagccattcangctt 405 |||||| || ||||||||||| || ||||| || || ||||| |||||||| || |||| Sbjct: 14974671 gtcgtcaacgtcttttagttgataatagtgtggcgctatttctaccagccagtcgggctt 14974730 Query: 406 nagttccgtcacctg 420 |||||||| ||||| Sbjct: 14974731 cagttccgttacctg 14974745
>dbj|AP005866.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0076O03 Length = 140823 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 299 tacaatgcagctcgtccttggcccttgggcagcttctt 336 |||||||||||||||||||||||||| ||||||||||| Sbjct: 107056 tacaatgcagctcgtccttggcccttaggcagcttctt 107093 Score = 50.1 bits (25), Expect = 0.006 Identities = 62/75 (82%) Strand = Plus / Plus Query: 346 gtcgtccacatcttttagttggtagtagtgcggggcaatttccaccagccattcangctt 405 |||||| || ||||||||||| || ||||| || || ||||| |||||||| || |||| Sbjct: 107200 gtcgtcaacgtcttttagttgataatagtgtggcgctatttctaccagccagtcgggctt 107259 Query: 406 nagttccgtcacctg 420 |||||||| ||||| Sbjct: 107260 cagttccgttacctg 107274
>ref|XM_475183.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3213 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/66 (84%) Strand = Plus / Minus Query: 367 gtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacctgacncat 426 |||||||||||| || || ||||||||||| || |||| || ||||||||||| | ||| Sbjct: 3084 gtagtagtgcggcgcgatctccaccagccactccggcttgagctccgtcacctgcctcat 3025 Query: 427 gtactc 432 |||||| Sbjct: 3024 gtactc 3019
>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete sequence Length = 88352 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/66 (84%) Strand = Plus / Plus Query: 367 gtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacctgacncat 426 |||||||||||| || || ||||||||||| || |||| || ||||||||||| | ||| Sbjct: 33731 gtagtagtgcggcgcgatctccaccagccactccggcttgagctccgtcacctgcctcat 33790 Query: 427 gtactc 432 |||||| Sbjct: 33791 gtactc 33796
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/66 (84%) Strand = Plus / Plus Query: 367 gtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacctgacncat 426 |||||||||||| || || ||||||||||| || |||| || ||||||||||| | ||| Sbjct: 18728328 gtagtagtgcggcgcgatctccaccagccactccggcttgagctccgtcacctgcctcat 18728387 Query: 427 gtactc 432 |||||| Sbjct: 18728388 gtactc 18728393
>dbj|AK108808.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D04, full insert sequence Length = 3427 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/66 (83%) Strand = Plus / Minus Query: 367 gtagtagtgcggggcaatttccaccagccattcangcttnagttccgtcacctgacncat 426 |||||||||||| || || |||||| |||| || |||| || ||||||||||| | ||| Sbjct: 3217 gtagtagtgcggcgcgatctccaccggccactccggcttgagctccgtcacctgcctcat 3158 Query: 427 gtactc 432 |||||| Sbjct: 3157 gtactc 3152
>emb|AL109806.22|HSJ1153D9 Human DNA sequence from clone RP5-1153D9 on chromosome 20 Contains the C20orf43 gene, the C20orf106 gene, the C20orf107 gene and the C20orf105 gene for a novel protein similar to beta 1,6-N-acetylglucosaminyltransferase, complete sequence Length = 94121 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 19 acaacacagtggtaggcactgt 40 |||||||||||||||||||||| Sbjct: 6429 acaacacagtggtaggcactgt 6408
>emb|CR589882.5| Zebrafish DNA sequence from clone CH211-221N23 in linkage group 13, complete sequence Length = 205759 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 236 aaactaaactgtttacacaaca 257 |||||||||||||||||||||| Sbjct: 49829 aaactaaactgtttacacaaca 49808
>gb|AY873916.1| Tribolium castaneum chitinase 5 (Chi-5) mRNA, complete cds Length = 1241 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 tgtttgaaactaaactgttta 250 ||||||||||||||||||||| Sbjct: 1221 tgtttgaaactaaactgttta 1201
>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24 Length = 304250 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gaagcagcgtcgtccacatct 358 ||||||||||||||||||||| Sbjct: 274260 gaagcagcgtcgtccacatct 274240
>ref|NM_001039428.1| Tribolium castaneum chitinase 5 (Chi-5), mRNA Length = 1241 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 tgtttgaaactaaactgttta 250 ||||||||||||||||||||| Sbjct: 1221 tgtttgaaactaaactgttta 1201
>ref|XM_514951.1| PREDICTED: Pan troglodytes DIP2-like protein (LOC458619), mRNA Length = 17890 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaaacaagagtagaaagaaa 211 |||||||||||||||||||| Sbjct: 12110 aaaacaagagtagaaagaaa 12091
>ref|XM_531509.1| PREDICTED: Pan troglodytes LOC474062 (LOC474062), mRNA Length = 22126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaaacaagagtagaaagaaa 211 |||||||||||||||||||| Sbjct: 15152 aaaacaagagtagaaagaaa 15133
>ref|NM_001031159.1| Gallus gallus DEAH (Asp-Glu-Ala-His) box polypeptide 15 (DHX15), mRNA Length = 2892 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 ggggcaatttccaccagccattca 400 |||||||||| ||||||||||||| Sbjct: 2331 ggggcaattttcaccagccattca 2308
>ref|XM_424006.1| PREDICTED: Gallus gallus similar to Putative pre-mRNA splicing factor RNA helicase (DEAH box protein 15) (LOC426349), partial mRNA Length = 771 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 ggggcaatttccaccagccattca 400 |||||||||| ||||||||||||| Sbjct: 213 ggggcaattttcaccagccattca 190
>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete sequence Length = 202526 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 aagaaaaaagccatgtgatc 225 |||||||||||||||||||| Sbjct: 101690 aagaaaaaagccatgtgatc 101671
>emb|CR352342.9| Zebrafish DNA sequence from clone CH211-134H7 in linkage group 12, complete sequence Length = 186937 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 ggtaggcactgtatgtttgataac 52 |||| ||||||||||||||||||| Sbjct: 186100 ggtatgcactgtatgtttgataac 186077
>emb|AL355572.13| Human DNA sequence from clone RP11-366I22 on chromosome 13, complete sequence Length = 81324 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aatgccaatgattgatacaa 22 |||||||||||||||||||| Sbjct: 23516 aatgccaatgattgatacaa 23497
>emb|AJ851741.1| Gallus gallus mRNA for hypothetical protein, clone 24b10 Length = 2892 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 ggggcaatttccaccagccattca 400 |||||||||| ||||||||||||| Sbjct: 2331 ggggcaattttcaccagccattca 2308
>gb|AC022272.6| Homo sapiens BAC clone RP11-563E2 from 4, complete sequence Length = 186535 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ataggatgtaatctaaaaca 197 |||||||||||||||||||| Sbjct: 27603 ataggatgtaatctaaaaca 27622
>dbj|BS000244.1| Pan troglodytes chromosome 22 clone:PTB-070F15, map 22, complete sequences Length = 155086 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaaacaagagtagaaagaaa 211 |||||||||||||||||||| Sbjct: 12585 aaaacaagagtagaaagaaa 12566
>dbj|BS000243.1| Pan troglodytes chromosome 22 clone:CH251-388O03, map 22, complete sequences Length = 182350 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaaacaagagtagaaagaaa 211 |||||||||||||||||||| Sbjct: 164113 aaaacaagagtagaaagaaa 164094
>gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, complete sequence Length = 172011 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 aagaaaaaagccatgtgatc 225 |||||||||||||||||||| Sbjct: 125174 aagaaaaaagccatgtgatc 125193
>dbj|AP000336.2| Homo sapiens genomic DNA, chromosome 21 clone:CMP21-S588, complete sequence Length = 37459 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaaacaagagtagaaagaaa 211 |||||||||||||||||||| Sbjct: 35884 aaaacaagagtagaaagaaa 35865
>dbj|AP001760.1| Homo sapiens genomic DNA, chromosome 21q, section 104/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaaacaagagtagaaagaaa 211 |||||||||||||||||||| Sbjct: 121360 aaaacaagagtagaaagaaa 121341
>dbj|AP004147.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-785K22, complete sequence Length = 97120 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agaaagaaaaaagccatgtg 222 |||||||||||||||||||| Sbjct: 69329 agaaagaaaaaagccatgtg 69310
>dbj|AP000215.1| Homo sapiens genomic DNA, chromosome 21q22.3-ter, Ter region, clone f27E1-T1136, segment 1/4, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aaaacaagagtagaaagaaa 211 |||||||||||||||||||| Sbjct: 61901 aaaacaagagtagaaagaaa 61882 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,576,984 Number of Sequences: 3902068 Number of extensions: 3576984 Number of successful extensions: 59922 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59855 Number of HSP's gapped (non-prelim): 67 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)