ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SALL1_MOUSE (Q9ER74) Sal-like protein 1 (Zinc finger protein Spa... 28 2.9
2VGLG_CHAV (P13180) Spike glycoprotein precursor 29 8.7

>SALL1_MOUSE (Q9ER74) Sal-like protein 1 (Zinc finger protein Spalt-3) (Sal-3)|
           (MSal-3)
          Length = 1322

 Score = 28.1 bits (61), Expect(2) = 2.9
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -2

Query: 545 MDTLPSSMATLHSSMATPLPATLAHLVTVVATEEASAWAAC*LEAQQLLPPLTEHTRSLT 366
           +DT P  + TL +S+  PLP TL  L   + TEE +             P    H+ +  
Sbjct: 543 LDTKPV-LPTLTTSVGLPLPPTLPSLTPFIKTEEPA-------------PIPISHSAASP 588

Query: 365 AGTVEADT 342
            G+V++D+
Sbjct: 589 QGSVKSDS 596



 Score = 21.2 bits (43), Expect(2) = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = -3

Query: 577 IPSATGVPSSAWIPSP---AAWL 518
           +P++TG+P    IPS     +WL
Sbjct: 521 VPTSTGIPYGMSIPSEKPVTSWL 543



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>VGLG_CHAV (P13180) Spike glycoprotein precursor|
          Length = 524

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 57  TPCFRYISKAFPDQTKF-WKPTRR 125
           TP + Y+S AFP+ TK  WKP  +
Sbjct: 17  TPLYSYLSIAFPENTKLDWKPVTK 40


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,357,268
Number of Sequences: 219361
Number of extensions: 694058
Number of successful extensions: 2549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2547
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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