| Clone Name | rbaal23b05 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | SALL1_MOUSE (Q9ER74) Sal-like protein 1 (Zinc finger protein Spa... | 28 | 2.9 | 2 | VGLG_CHAV (P13180) Spike glycoprotein precursor | 29 | 8.7 |
|---|
>SALL1_MOUSE (Q9ER74) Sal-like protein 1 (Zinc finger protein Spalt-3) (Sal-3)| (MSal-3) Length = 1322 Score = 28.1 bits (61), Expect(2) = 2.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -2 Query: 545 MDTLPSSMATLHSSMATPLPATLAHLVTVVATEEASAWAAC*LEAQQLLPPLTEHTRSLT 366 +DT P + TL +S+ PLP TL L + TEE + P H+ + Sbjct: 543 LDTKPV-LPTLTTSVGLPLPPTLPSLTPFIKTEEPA-------------PIPISHSAASP 588 Query: 365 AGTVEADT 342 G+V++D+ Sbjct: 589 QGSVKSDS 596 Score = 21.2 bits (43), Expect(2) = 2.9 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 3/23 (13%) Frame = -3 Query: 577 IPSATGVPSSAWIPSP---AAWL 518 +P++TG+P IPS +WL Sbjct: 521 VPTSTGIPYGMSIPSEKPVTSWL 543
>VGLG_CHAV (P13180) Spike glycoprotein precursor| Length = 524 Score = 29.3 bits (64), Expect = 8.7 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +3 Query: 57 TPCFRYISKAFPDQTKF-WKPTRR 125 TP + Y+S AFP+ TK WKP + Sbjct: 17 TPLYSYLSIAFPENTKLDWKPVTK 40 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,357,268 Number of Sequences: 219361 Number of extensions: 694058 Number of successful extensions: 2549 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2433 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2547 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)