ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal22l21 |
|---|---|
| Clone Library Name | barley_pub |
>RL3_ORYSA (P35684) 60S ribosomal protein L3| Length = 388 Score = 56.2 bits (134), Expect(3) = 5e-16 Identities = 24/26 (92%), Positives = 26/26 (100%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DTSSKFGHGRFQTTDEKQRF+GKLK Sbjct: 362 IDTSSKFGHGRFQTTDEKQRFFGKLK 387 Score = 33.9 bits (76), Expect(3) = 5e-16 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 QSLLKQTSRLALEEIKL Sbjct: 343 QSLLKQTSRLALEEIKL 359 Score = 31.2 bits (69), Expect(3) = 5e-16 Identities = 14/16 (87%), Positives = 14/16 (87%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 MIK CVGPKKRVVTL Sbjct: 326 MIKGCCVGPKKRVVTL 341
>RL3A_ARATH (P17094) 60S ribosomal protein L3| Length = 388 Score = 39.7 bits (91), Expect(3) = 2e-10 Identities = 16/25 (64%), Positives = 21/25 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKL 125 +DT+S FGHGRFQT+ EK RFY ++ Sbjct: 362 IDTASIFGHGRFQTSLEKMRFYNRV 386 Score = 31.6 bits (70), Expect(3) = 2e-10 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 QSLL QTSRLALEEIKL Sbjct: 343 QSLLTQTSRLALEEIKL 359 Score = 31.2 bits (69), Expect(3) = 2e-10 Identities = 14/16 (87%), Positives = 14/16 (87%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 MIK CVGPKKRVVTL Sbjct: 326 MIKGCCVGPKKRVVTL 341
>RL3B_ARATH (P22738) 60S ribosomal protein L3| Length = 389 Score = 37.4 bits (85), Expect(3) = 6e-10 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGK 128 +D +S GHGRFQT+ EK +FYG+ Sbjct: 362 IDAASNGGHGRFQTSQEKAKFYGR 385 Score = 32.0 bits (71), Expect(3) = 6e-10 Identities = 15/17 (88%), Positives = 17/17 (100%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 Q+LLKQTSRLA+EEIKL Sbjct: 343 QTLLKQTSRLAMEEIKL 359 Score = 31.2 bits (69), Expect(3) = 6e-10 Identities = 14/16 (87%), Positives = 14/16 (87%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 MIK CVGPKKRVVTL Sbjct: 326 MIKGCCVGPKKRVVTL 341
>RL3_TOXCA (P49149) 60S ribosomal protein L3| Length = 401 Score = 45.1 bits (105), Expect(2) = 2e-06 Identities = 20/26 (76%), Positives = 22/26 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DTSSKFGHGRFQT EK+ F GKLK Sbjct: 364 IDTSSKFGHGRFQTHAEKRAFMGKLK 389 Score = 24.3 bits (51), Expect(2) = 2e-06 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 MI+ CVG KKR +TL Sbjct: 328 MIRGCCVGSKKRPITL 343
>RL3_BOVIN (P39872) 60S ribosomal protein L3| Length = 402 Score = 43.9 bits (102), Expect(3) = 2e-06 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFGHGRFQT +EK+ F G LK Sbjct: 367 IDTTSKFGHGRFQTVEEKKAFMGPLK 392 Score = 22.3 bits (46), Expect(3) = 2e-06 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K VG KKRV+TL Sbjct: 331 MLKGCVVGTKKRVLTL 346 Score = 21.9 bits (45), Expect(3) = 2e-06 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 +SLL QT R ALE+I L Sbjct: 348 KSLLVQTKRRALEKIDL 364
>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)| Length = 402 Score = 43.5 bits (101), Expect(3) = 2e-06 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFGHGRFQT +EK+ F G LK Sbjct: 367 IDTTSKFGHGRFQTMEEKKAFMGPLK 392 Score = 22.3 bits (46), Expect(3) = 2e-06 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K VG KKRV+TL Sbjct: 331 MLKGCVVGTKKRVLTL 346 Score = 21.9 bits (45), Expect(3) = 2e-06 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 +SLL QT R ALE+I L Sbjct: 348 KSLLVQTKRRALEKIDL 364
>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)| Length = 402 Score = 43.5 bits (101), Expect(3) = 2e-06 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFGHGRFQT +EK+ F G LK Sbjct: 367 IDTTSKFGHGRFQTMEEKKAFMGPLK 392 Score = 22.3 bits (46), Expect(3) = 2e-06 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K VG KKRV+TL Sbjct: 331 MLKGCVVGTKKRVLTL 346 Score = 21.9 bits (45), Expect(3) = 2e-06 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 +SLL QT R ALE+I L Sbjct: 348 KSLLVQTKRRALEKIDL 364
>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3| Length = 402 Score = 43.5 bits (101), Expect(3) = 2e-06 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFGHGRFQT +EK+ F G LK Sbjct: 367 IDTTSKFGHGRFQTMEEKKAFMGPLK 392 Score = 22.3 bits (46), Expect(3) = 2e-06 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K VG KKRV+TL Sbjct: 331 MLKGCVVGTKKRVLTL 346 Score = 21.9 bits (45), Expect(3) = 2e-06 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 +SLL QT R ALE+I L Sbjct: 348 KSLLVQTKRRALEKIDL 364
>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)| (TARBP-B) Length = 402 Score = 43.5 bits (101), Expect(3) = 2e-06 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFGHGRFQT +EK+ F G LK Sbjct: 367 IDTTSKFGHGRFQTMEEKKAFMGPLK 392 Score = 22.3 bits (46), Expect(3) = 2e-06 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K VG KKRV+TL Sbjct: 331 MLKGCVVGTKKRVLTL 346 Score = 21.9 bits (45), Expect(3) = 2e-06 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 +SLL QT R ALE+I L Sbjct: 348 KSLLVQTKRRALEKIDL 364
>RL3_CAEEL (P50880) 60S ribosomal protein L3| Length = 401 Score = 44.7 bits (104), Expect(2) = 4e-06 Identities = 20/26 (76%), Positives = 22/26 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DTSSK GHGRFQTT EK+ F GKLK Sbjct: 365 IDTSSKTGHGRFQTTAEKRAFMGKLK 390 Score = 23.5 bits (49), Expect(2) = 4e-06 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M++ +GPKKR++TL Sbjct: 329 MLRGAVLGPKKRLITL 344
>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3| Length = 401 Score = 44.7 bits (104), Expect(2) = 4e-06 Identities = 20/26 (76%), Positives = 22/26 (84%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DTSSK GHGRFQTT EK+ F GKLK Sbjct: 365 IDTSSKTGHGRFQTTAEKRAFMGKLK 390 Score = 23.5 bits (49), Expect(2) = 4e-06 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M++ +GPKKR++TL Sbjct: 329 MLRGAILGPKKRLITL 344
>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3| Length = 383 Score = 42.7 bits (99), Expect(2) = 1e-05 Identities = 19/26 (73%), Positives = 21/26 (80%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 VDTSSK GHGRFQT+ EK+ FYG K Sbjct: 350 VDTSSKIGHGRFQTSAEKKAFYGARK 375 Score = 23.5 bits (49), Expect(2) = 1e-05 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K VG +KRVVTL Sbjct: 317 MVKGAVVGARKRVVTL 332
>RL3_DROME (O16797) 60S ribosomal protein L3| Length = 415 Score = 38.9 bits (89), Expect(2) = 2e-05 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 5/45 (11%) Frame = -3 Query: 241 RPLVSHWRKSSSXPV-----DTSSKFGHGRFQTTDEKQRFYGKLK 122 + L+ H ++S+ + DTSSK GHGRFQT +K F G LK Sbjct: 348 KSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 392 Score = 26.9 bits (58), Expect(2) = 2e-05 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 MIK C+G KKR++TL Sbjct: 331 MIKGCCIGSKKRIITL 346
>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)| Length = 392 Score = 42.4 bits (98), Expect(2) = 1e-04 Identities = 18/26 (69%), Positives = 21/26 (80%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DTSSKFGHG FQT +EK+ F G LK Sbjct: 360 IDTSSKFGHGAFQTPEEKRAFMGTLK 385 Score = 20.8 bits (42), Expect(2) = 1e-04 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K G KKRV+TL Sbjct: 324 MVKGSVPGVKKRVMTL 339
>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like| Length = 406 Score = 40.8 bits (94), Expect(2) = 2e-04 Identities = 17/26 (65%), Positives = 20/26 (76%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFGHGRFQT EK+ F G K Sbjct: 367 IDTTSKFGHGRFQTAQEKRAFMGPQK 392 Score = 21.6 bits (44), Expect(2) = 2e-04 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K G KKRV+TL Sbjct: 331 MLKGCIAGTKKRVITL 346
>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like| Length = 406 Score = 40.8 bits (94), Expect(2) = 2e-04 Identities = 17/26 (65%), Positives = 20/26 (76%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFGHGRFQT EK+ F G K Sbjct: 367 IDTTSKFGHGRFQTAQEKRAFMGPQK 392 Score = 21.6 bits (44), Expect(2) = 2e-04 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K G KKRV+TL Sbjct: 331 MLKGCIAGTKKRVITL 346
>RL3_ASHGO (Q759R7) 60S ribosomal protein L3| Length = 388 Score = 38.1 bits (87), Expect(3) = 2e-04 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFG GRFQT EK F G LK Sbjct: 360 IDTASKFGKGRFQTPAEKHAFMGTLK 385 Score = 21.6 bits (44), Expect(3) = 2e-04 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 +SL TSR ALEE+ L Sbjct: 341 KSLYTSTSRRALEEVNL 357 Score = 21.2 bits (43), Expect(3) = 2e-04 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K G +KRVVTL Sbjct: 324 MVKGSIPGTRKRVVTL 339
>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B| Length = 387 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 5/45 (11%) Frame = -3 Query: 241 RPLVSHWRKSSSXPV-----DTSSKFGHGRFQTTDEKQRFYGKLK 122 + L++H + + PV DT+SKFGHGRFQT E ++F G LK Sbjct: 339 KSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383
>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A| Length = 387 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 5/45 (11%) Frame = -3 Query: 241 RPLVSHWRKSSSXPV-----DTSSKFGHGRFQTTDEKQRFYGKLK 122 + L++H + + PV DT+SKFGHGRFQT E ++F G LK Sbjct: 339 KSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383
>RL3_NEUCR (P59671) 60S ribosomal protein L3| Length = 392 Score = 40.0 bits (92), Expect(2) = 5e-04 Identities = 17/26 (65%), Positives = 21/26 (80%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DTSS+FGHG FQT EK++F G LK Sbjct: 360 IDTSSEFGHGAFQTPAEKKQFQGTLK 385 Score = 20.8 bits (42), Expect(2) = 5e-04 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K G KKRV+TL Sbjct: 324 MVKGSVPGVKKRVMTL 339
>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3| Length = 387 Score = 38.1 bits (87), Expect(2) = 0.001 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFG GRFQT EK F G LK Sbjct: 359 IDTASKFGKGRFQTPAEKHAFMGTLK 384 Score = 21.6 bits (44), Expect(2) = 0.001 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K G KKRVVTL Sbjct: 323 MVKGSIPGCKKRVVTL 338
>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of| killer protein 8) (Trichodermin resistance protein) Length = 386 Score = 38.1 bits (87), Expect(2) = 0.001 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFG GRFQT EK F G LK Sbjct: 358 IDTASKFGKGRFQTPAEKHAFMGTLK 383 Score = 21.6 bits (44), Expect(2) = 0.001 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 +SL TSR ALEE+ L Sbjct: 339 KSLYTNTSRKALEEVSL 355
>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3| Length = 387 Score = 38.1 bits (87), Expect(2) = 0.001 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFG GRFQT EK F G LK Sbjct: 359 IDTASKFGKGRFQTPAEKHAFLGTLK 384 Score = 21.2 bits (43), Expect(2) = 0.001 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 257 QSLLKQTSRLALEEIKL 207 +SL TSR ALEE+ L Sbjct: 340 KSLYTNTSRKALEEVTL 356
>RL3_DICDI (P34113) 60S ribosomal protein L3| Length = 397 Score = 36.6 bits (83), Expect(2) = 0.004 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DTSSKFGHG QT ++K +++G K Sbjct: 366 IDTSSKFGHGLHQTAEDKTKYFGVKK 391 Score = 21.2 bits (43), Expect(2) = 0.004 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTL 262 M+K GP+KR +TL Sbjct: 330 MLKGCVAGPRKRALTL 345
>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3| Length = 389 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/26 (65%), Positives = 19/26 (73%) Frame = -3 Query: 199 VDTSSKFGHGRFQTTDEKQRFYGKLK 122 +DT+SKFG GRFQT EK F G LK Sbjct: 359 IDTASKFGKGRFQTPAEKHAFLGTLK 384
>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)| Length = 1411 Score = 31.2 bits (69), Expect = 0.69 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = -1 Query: 258 PVPAEADLSSRTGGNQAXXXSTPLPSLGTAVSRPPTRSRGSMASSRLELLRNISCVILSK 79 P A LS +TGG +A +TP SR P + G+ +S L L NI+ +L + Sbjct: 1172 PQQAAGMLSPKTGGKEAASGTTP------QKSRKPKKGAGNPQASTLALQSNITQCLLGQ 1225
>NFRKB_HUMAN (Q6P4R8) Nuclear factor related to kappa-B-binding protein| (DNA-binding protein R kappa-B) Length = 1299 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -1 Query: 273 VVTLXPVPAEADLSS--RTGGNQAXXXSTPLPSLGTAVSRPPTRSRGSMASS 124 V+ PV A+ ++ R G Q T LP+ + VS+P T S G+ A S Sbjct: 852 VMATVPVKAQTTAATVQRPGPGQTGLTVTSLPATASPVSKPATSSPGTSAPS 903
>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 751 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -1 Query: 258 PVPAEADLSSRTGGNQAXXXSTPLPSLGTAVSRPPTRSRGSMA 130 P P + LSS G N A + P +LG S P+ + G+ A Sbjct: 327 PPPTTSALSSTPGNNGASTPAAPTSALGPKASPAPSHNSGTPA 369
>PIV6_ADE40 (P48309) Minor capsid protein 6 precursor (Minor capsid protein VI)| [Contains: Protease cofactor] Length = 267 Score = 29.3 bits (64), Expect = 2.6 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 10/51 (19%) Frame = -1 Query: 192 PLPSLGTAVSRP--PT--------RSRGSMASSRLELLRNISCVILSKRTC 70 P P+LGTAVSRP PT R RG+ S L + + L +R C Sbjct: 216 PAPTLGTAVSRPTAPTVAVATPARRPRGANWQSTLNSIVGLGVKSLKRRRC 266
>BRD8_MOUSE (Q8R3B7) Bromodomain-containing protein 8| Length = 951 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/54 (31%), Positives = 21/54 (38%) Frame = -1 Query: 309 MIKXXCVGPKKRVVTLXPVPAEADLSSRTGGNQAXXXSTPLPSLGTAVSRPPTR 148 MI + P V P + A SR +TPLPS T S PP + Sbjct: 315 MIHGGEIQPTTSAVAASPAASGAPTLSRLLEAGPTQFTTPLPSFTTVASEPPVK 368
>YS44_CAEEL (Q09372) Hypothetical protein ZK177.4| Length = 655 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 171 AVSRPPTRSRGSMASSRLELLRNISCVILSKRTCD 67 +VS+PP +S GS+ L +CVI K +C+ Sbjct: 444 SVSQPPMKSTGSLEQQLAALKPLAACVISEKVSCE 478
>MAD47_ORYSA (Q5K4R0) MADS-box transcription factor 47 (OsMADS47)| Length = 246 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 154 RWSGNGRAQTWKRCRXXXSLISSSARREVCFSR 252 R G GRA T KR R I + A R+V FS+ Sbjct: 10 RGEGEGRAATGKRERIAIRRIDNLAARQVTFSK 42
>LEU2_BUCBP (P59519) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 471 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/26 (38%), Positives = 20/26 (76%) Frame = -1 Query: 141 GSMASSRLELLRNISCVILSKRTCDT 64 GS +SR+E LR ++ ++++KR C++ Sbjct: 345 GSCTNSRIEDLRAVAKIVMNKRVCNS 370
>GSPM_VIBCH (P41851) General secretion pathway protein M (Cholera toxin| secretion protein epsM) Length = 165 Score = 27.3 bits (59), Expect = 10.0 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -2 Query: 266 PSXQSLLKQTSRLALEEIKLXXXRHLFQVWARPFPDHRREAEV--LWQAQGLSCCAISV 96 P Q + T + +E I++ + QVW +P P + + + L + QG+S AI + Sbjct: 87 PLNQVITNSTRQFNIELIRVQPRGEMMQVWIQPLPFSQLVSWIAYLQERQGVSVDAIDI 145
>POGZ_MOUSE (Q8BZH4) Pogo transposable element with ZNF domain| Length = 1409 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -1 Query: 282 KKRVVTLXPVPAEADLSSRTGGNQAXXXSTPLPSLGTAVSRPPTR 148 KK +VTL + + GG P P LGT V++P R Sbjct: 83 KKTLVTLIANNNAGNTLVQQGGQPLILTQNPAPGLGTMVTQPVLR 127 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,740,237 Number of Sequences: 219361 Number of extensions: 607262 Number of successful extensions: 1847 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1846 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
