ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal22l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY273922.1| Hordeum vulgare subsp. vulgare putative cyclic nu... 856 0.0
2gb|AY972629.1| Hordeum vulgare subsp. vulgare cultivar Morex sub... 856 0.0
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
4dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
5dbj|AK112041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
6dbj|AK100312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
7emb|AJ002610.1|HVAJ2610 Hordeum vulgare mRNA for putative calmod... 133 5e-28
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
9dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
10dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
11dbj|AK099993.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
12dbj|AK120457.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
13dbj|AK107464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
14dbj|AK072021.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
15gb|AC124590.4| Mus musculus BAC clone RP23-133P12 from chromosom... 42 1.5
16emb|AL137157.7| Human DNA sequence from clone RP5-1116C7 on chro... 42 1.5
17emb|AL831748.7| Zebrafish DNA sequence from clone DKEY-70P6 in l... 42 1.5
18emb|BX649575.18| Zebrafish DNA sequence from clone CH211-215H12 ... 42 1.5
19gb|AC013251.19| Homo sapiens 3 BAC RP11-38P22 (Roswell Park Canc... 42 1.5
20ref|XM_236367.3| PREDICTED: Rattus norvegicus similar to talin 2... 42 1.5
21ref|NM_001035023.1| Bos taurus arsenic (+3 oxidation state) meth... 40 5.9
22ref|XM_413760.1| PREDICTED: Gallus gallus similar to talin 2 (LO... 40 5.9
23gb|AC126046.3| Mus musculus BAC clone RP23-176P24 from chromosom... 40 5.9
24gb|AC092848.3| Homo sapiens BAC clone RP11-689A23 from 7, comple... 40 5.9
25gb|DQ230892.1| Anopheles merus distal 2La inversion breakpoint r... 40 5.9
26gb|DQ230891.1| Anopheles gambiae strain Bamako distal 2La invers... 40 5.9
27gb|DQ230889.1| Anopheles arabiensis distal 2La inversion breakpo... 40 5.9
28gb|AC142307.1| Pan troglodytes BAC clone RP43-131H12 from 7, com... 40 5.9
29emb|AL354758.14| Human DNA sequence from clone RP11-29P12 on chr... 40 5.9
30gb|AC160464.3| Mus musculus chromosome 7, clone RP23-256J14, com... 40 5.9
31gb|AC144435.2| Homo sapiens fosmid clone XXFOS-801248E3 from 7, ... 40 5.9
32gb|AC153914.5| Mus musculus 10 BAC RP23-297H17 (Roswell Park Can... 40 5.9
33emb|CR394529.7| Zebrafish DNA sequence from clone CH211-121F17 i... 40 5.9
34gb|AC024947.5| Homo sapiens chromosome 01 clone RP11-200I10, com... 40 5.9
35gb|BC109908.1| Bos taurus arsenic (+3 oxidation state) methyltra... 40 5.9
36emb|CR387858.1| Gallus gallus finished cDNA, clone ChEST325c12 40 5.9
37dbj|AK053460.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 5.9
38gb|BT021547.1| Bos taurus arsenic (+3 oxidation state) methyltra... 40 5.9
39emb|AL928825.6| Zebrafish DNA sequence from clone CH211-284P13, ... 40 5.9
40gb|AC147447.3| Gallus gallus BAC clone CH261-9P3 from chromosome... 40 5.9
41emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on ch... 40 5.9
42gb|AC153551.4| Mus musculus 10 BAC RP23-383A7 (Roswell Park Canc... 40 5.9 
>gb|AY273922.1| Hordeum vulgare subsp. vulgare putative cyclic nucleotide and
           calmodulin-regulated ion channel protein mRNA, partial
           cds
          Length = 891

 Score =  856 bits (432), Expect = 0.0
 Identities = 439/440 (99%), Gaps = 1/440 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagcaataatacattgaattgcatcatataaatcacaaggatgcaggacaagcggtcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaagcaataatacattgaattgcatcatataaatcacaaggatgcaggacaagcggtcta 749

                                                                       
Query: 61  tctatgtacagcatcagtcataaactgagccgagctgagagaagatgagggcacaagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tctatgtacagcatcagtcataaactgagccgagctgagagaagatgagggcacaagagc 689

                                                                       
Query: 121 aaactttaccagttgggttgtgactttctgattgtatgtcaaaattactctccaacggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aaactttaccagttgggttgtgactttctgattgtatgtcaaaattactctccaacggca 629

                                                                       
Query: 181 aaaaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaaaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgg 569

                                                                       
Query: 241 gcctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gcctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcg 509

                                                                       
Query: 301 tacagtgccgctcccagactgagcttggtagagtcgtcacttacaatagctgcttgtaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tacagtgccgctcccagactgagcttggtagagtcgtcacttacaatagctgcttgtaac 449

                                                                       
Query: 361 ctcttctccttctcaaacaaagaatcctccagcttcttcctgcaatatctgtgccaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctcttctccttctcaaacaaagaatcctccagcttcttcctgcaatatctgtgccaagct 389

                               
Query: 421 gccctgtataaaacaagcgg 440
           | ||||||||||||||||||
Sbjct: 388 g-cctgtataaaacaagcgg 370
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>gb|AY972629.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG095 cyclic
            nucleotide-gated ion channel 1 (CNGC1) gene, partial cds
          Length = 5200

 Score =  856 bits (432), Expect = 0.0
 Identities = 439/440 (99%), Gaps = 1/440 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaagcaataatacattgaattgcatcatataaatcacaaggatgcaggacaagcggtcta 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 aaagcaataatacattgaattgcatcatataaatcacaaggatgcaggacaagcggtcta 2617

                                                                        
Query: 61   tctatgtacagcatcagtcataaactgagccgagctgagagaagatgagggcacaagagc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 tctatgtacagcatcagtcataaactgagccgagctgagagaagatgagggcacaagagc 2557

                                                                        
Query: 121  aaactttaccagttgggttgtgactttctgattgtatgtcaaaattactctccaacggca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2556 aaactttaccagttgggttgtgactttctgattgtatgtcaaaattactctccaacggca 2497

                                                                        
Query: 181  aaaaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 aaaaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgg 2437

                                                                        
Query: 241  gcctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 gcctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcg 2377

                                                                        
Query: 301  tacagtgccgctcccagactgagcttggtagagtcgtcacttacaatagctgcttgtaac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 tacagtgccgctcccagactgagcttggtagagtcgtcacttacaatagctgcttgtaac 2317

                                                                        
Query: 361  ctcttctccttctcaaacaaagaatcctccagcttcttcctgcaatatctgtgccaagct 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 ctcttctccttctcaaacaaagaatcctccagcttcttcctgcaatatctgtgccaagct 2257

                                
Query: 421  gccctgtataaaacaagcgg 440
            | ||||||||||||||||||
Sbjct: 2256 g-cctgtataaaacaagcgg 2238
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  234 bits (118), Expect = 2e-58
 Identities = 224/258 (86%), Gaps = 1/258 (0%)
 Strand = Plus / Plus

                                                                           
Query: 181     aaaaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgg 240
               |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct: 8746542 aaaaagttcggttctgcaggcttctgtaataaccttgcaggcactctttcctgcaaacgg 8746601

                                                                           
Query: 241     gcctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcg 300
               |||||||| || |||||||||||||||||||||||||| || ||||||||||| || || 
Sbjct: 8746602 gcctttcgagtggcatttctccgtaagatccgcatcatattaccagcaaaacgtgaagca 8746661

                                                                           
Query: 301     tacagtgccgctcccagactgagcttggtagagtcgtcacttacaatagctgcttgtaac 360
               || || ||||| || |||||||||    | ||  | ||||| ||||| || ||||| |||
Sbjct: 8746662 tatagcgccgcaccaagactgagcgaactcgaaccatcactgacaattgccgcttgcaac 8746721

                                                                           
Query: 361     ctcttctccttctcaaacaaagaatcctccagcttcttcctgcaatatctgtgccaagct 420
               |||||||||||||||||||||| ||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 8746722 ctcttctccttctcaaacaaagtatcctccagtttctttctgcagtatctatgccaagct 8746781

                                 
Query: 421     gccctgtataaaacaagc 438
               | ||||||||||||||||
Sbjct: 8746782 g-cctgtataaaacaagc 8746798
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>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0052K15
          Length = 156250

 Score =  234 bits (118), Expect = 2e-58
 Identities = 224/258 (86%), Gaps = 1/258 (0%)
 Strand = Plus / Plus

                                                                         
Query: 181   aaaaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgg 240
             |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct: 45621 aaaaagttcggttctgcaggcttctgtaataaccttgcaggcactctttcctgcaaacgg 45680

                                                                         
Query: 241   gcctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcg 300
             |||||||| || |||||||||||||||||||||||||| || ||||||||||| || || 
Sbjct: 45681 gcctttcgagtggcatttctccgtaagatccgcatcatattaccagcaaaacgtgaagca 45740

                                                                         
Query: 301   tacagtgccgctcccagactgagcttggtagagtcgtcacttacaatagctgcttgtaac 360
             || || ||||| || |||||||||    | ||  | ||||| ||||| || ||||| |||
Sbjct: 45741 tatagcgccgcaccaagactgagcgaactcgaaccatcactgacaattgccgcttgcaac 45800

                                                                         
Query: 361   ctcttctccttctcaaacaaagaatcctccagcttcttcctgcaatatctgtgccaagct 420
             |||||||||||||||||||||| ||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 45801 ctcttctccttctcaaacaaagtatcctccagtttctttctgcagtatctatgccaagct 45860

                               
Query: 421   gccctgtataaaacaagc 438
             | ||||||||||||||||
Sbjct: 45861 g-cctgtataaaacaagc 45877
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>dbj|AK112041.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H11, full
           insert sequence
          Length = 1414

 Score =  234 bits (118), Expect = 2e-58
 Identities = 224/258 (86%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                       
Query: 181 aaaaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgg 240
           |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct: 990 aaaaagttcggttctgcaggcttctgtaataaccttgcaggcactctttcctgcaaacgg 931

                                                                       
Query: 241 gcctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcg 300
           |||||||| || |||||||||||||||||||||||||| || ||||||||||| || || 
Sbjct: 930 gcctttcgagtggcatttctccgtaagatccgcatcatattaccagcaaaacgtgaagca 871

                                                                       
Query: 301 tacagtgccgctcccagactgagcttggtagagtcgtcacttacaatagctgcttgtaac 360
           || || ||||| || |||||||||    | ||  | ||||| ||||| || ||||| |||
Sbjct: 870 tatagcgccgcaccaagactgagcgaactcgaaccatcactgacaattgccgcttgcaac 811

                                                                       
Query: 361 ctcttctccttctcaaacaaagaatcctccagcttcttcctgcaatatctgtgccaagct 420
           |||||||||||||||||||||| ||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 810 ctcttctccttctcaaacaaagtatcctccagtttctttctgcagtatctatgccaagct 751

                             
Query: 421 gccctgtataaaacaagc 438
           | ||||||||||||||||
Sbjct: 750 g-cctgtataaaacaagc 734
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>dbj|AK100312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078M02, full
            insert sequence
          Length = 3034

 Score =  234 bits (118), Expect = 2e-58
 Identities = 224/258 (86%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                        
Query: 181  aaaaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgg 240
            |||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct: 2649 aaaaagttcggttctgcaggcttctgtaataaccttgcaggcactctttcctgcaaacgg 2590

                                                                        
Query: 241  gcctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcg 300
            |||||||| || |||||||||||||||||||||||||| || ||||||||||| || || 
Sbjct: 2589 gcctttcgagtggcatttctccgtaagatccgcatcatattaccagcaaaacgtgaagca 2530

                                                                        
Query: 301  tacagtgccgctcccagactgagcttggtagagtcgtcacttacaatagctgcttgtaac 360
            || || ||||| || |||||||||    | ||  | ||||| ||||| || ||||| |||
Sbjct: 2529 tatagcgccgcaccaagactgagcgaactcgaaccatcactgacaattgccgcttgcaac 2470

                                                                        
Query: 361  ctcttctccttctcaaacaaagaatcctccagcttcttcctgcaatatctgtgccaagct 420
            |||||||||||||||||||||| ||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 2469 ctcttctccttctcaaacaaagtatcctccagtttctttctgcagtatctatgccaagct 2410

                              
Query: 421  gccctgtataaaacaagc 438
            | ||||||||||||||||
Sbjct: 2409 g-cctgtataaaacaagc 2393
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>emb|AJ002610.1|HVAJ2610 Hordeum vulgare mRNA for putative calmodulin binding transporter
            protein
          Length = 2661

 Score =  133 bits (67), Expect = 5e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                        
Query: 184  aagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggcc 243
            |||||||||||||| |||||||| |||| |||||||||||||||||||||||  ||||||
Sbjct: 2335 aagttgggttctgctggcttctgtaacagccttgcaggcaccctttcctgcagccgggcc 2276

                                                                       
Query: 244  tttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcgaggcgta 302
            || ||||| ||||||||||  ||| ||||||||||||||| ||||||||| || |||||
Sbjct: 2275 ttccgggtggcatttctcctcaaggtccgcatcatgttgcgagcaaaacgtgaagcgta 2217
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  123 bits (62), Expect = 5e-25
 Identities = 101/114 (88%)
 Strand = Plus / Minus

                                                                            
Query: 183      aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
                ||||||||||||||| || || || ||||||||||||||||| ||||||| ||| || ||
Sbjct: 19204807 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttccttcaaccgagc 19204748

                                                                      
Query: 243      ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
                ||| ||||| ||||||||||  ||||||||||||||||||||||| ||||||||
Sbjct: 19204747 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagcgaaacgcga 19204694



 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 183      aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
                ||||||||||||||| || || || ||||||||||||||||| ||||||||||  | |||
Sbjct: 19222232 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttcctgcagccaggc 19222173

                                                                      
Query: 243      ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
                ||| ||||| ||||||||||  ||||||||||||||||||||||  ||||||||
Sbjct: 19222172 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagtgaaacgcga 19222119
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>dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0001B01
          Length = 147585

 Score =  123 bits (62), Expect = 5e-25
 Identities = 101/114 (88%)
 Strand = Plus / Minus

                                                                         
Query: 183   aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
             ||||||||||||||| || || || ||||||||||||||||| ||||||| ||| || ||
Sbjct: 42571 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttccttcaaccgagc 42512

                                                                   
Query: 243   ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
             ||| ||||| ||||||||||  ||||||||||||||||||||||| ||||||||
Sbjct: 42511 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagcgaaacgcga 42458



 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                         
Query: 183   aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
             ||||||||||||||| || || || ||||||||||||||||| ||||||||||  | |||
Sbjct: 59996 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttcctgcagccaggc 59937

                                                                   
Query: 243   ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
             ||| ||||| ||||||||||  ||||||||||||||||||||||  ||||||||
Sbjct: 59936 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagtgaaacgcga 59883
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>dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0043B22
          Length = 158857

 Score =  123 bits (62), Expect = 5e-25
 Identities = 101/114 (88%)
 Strand = Plus / Minus

                                                                          
Query: 183    aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
              ||||||||||||||| || || || ||||||||||||||||| ||||||| ||| || ||
Sbjct: 108292 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttccttcaaccgagc 108233

                                                                    
Query: 243    ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
              ||| ||||| ||||||||||  ||||||||||||||||||||||| ||||||||
Sbjct: 108232 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagcgaaacgcga 108179



 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                          
Query: 183    aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
              ||||||||||||||| || || || ||||||||||||||||| ||||||||||  | |||
Sbjct: 125717 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttcctgcagccaggc 125658

                                                                    
Query: 243    ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
              ||| ||||| ||||||||||  ||||||||||||||||||||||  ||||||||
Sbjct: 125657 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagtgaaacgcga 125604
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>dbj|AK099993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D09, full
            insert sequence
          Length = 2702

 Score =  123 bits (62), Expect = 5e-25
 Identities = 101/114 (88%)
 Strand = Plus / Minus

                                                                        
Query: 183  aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
            ||||||||||||||| || || || ||||||||||||||||| ||||||| ||| || ||
Sbjct: 2323 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttccttcaaccgagc 2264

                                                                  
Query: 243  ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
            ||| ||||| ||||||||||  ||||||||||||||||||||||| ||||||||
Sbjct: 2263 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagcgaaacgcga 2210
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>dbj|AK120457.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105J08, full
            insert sequence
          Length = 1640

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Plus

                                                                        
Query: 183  aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
            ||||||||||||||| || || || ||||||||||||||||| ||||||||||  | |||
Sbjct: 1316 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttcctgcagccaggc 1375

                                                                  
Query: 243  ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
            ||| ||||| ||||||||||  ||||||||||||||||||||||  ||||||||
Sbjct: 1376 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagtgaaacgcga 1429
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>dbj|AK107464.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-A09, full
            insert sequence
          Length = 1673

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Plus

                                                                        
Query: 183  aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
            ||||||||||||||| || || || ||||||||||||||||| ||||||||||  | |||
Sbjct: 1261 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttcctgcagccaggc 1320

                                                                  
Query: 243  ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
            ||| ||||| ||||||||||  ||||||||||||||||||||||  ||||||||
Sbjct: 1321 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagtgaaacgcga 1374
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>dbj|AK072021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105H04, full
            insert sequence
          Length = 1640

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Plus

                                                                        
Query: 183  aaagttgggttctgccggcttctgcaacaaccttgcaggcaccctttcctgcaaacgggc 242
            ||||||||||||||| || || || ||||||||||||||||| ||||||||||  | |||
Sbjct: 1316 aaagttgggttctgctggtttttgtaacaaccttgcaggcacactttcctgcagccaggc 1375

                                                                  
Query: 243  ctttcgggtagcatttctccgtaagatccgcatcatgttgccagcaaaacgcga 296
            ||| ||||| ||||||||||  ||||||||||||||||||||||  ||||||||
Sbjct: 1376 cttgcgggtggcatttctcctcaagatccgcatcatgttgccagtgaaacgcga 1429
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>gb|AC124590.4| Mus musculus BAC clone RP23-133P12 from chromosome 6, complete sequence
          Length = 215946

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 89    gccgagctgagagaagatgag 109
             |||||||||||||||||||||
Sbjct: 40243 gccgagctgagagaagatgag 40263
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>emb|AL137157.7| Human DNA sequence from clone RP5-1116C7 on chromosome 1q24.1-25.1
             Contains part of the DNM3 gene for dynamin 3, complete
             sequence
          Length = 109347

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   attgtatgtcaaaattactct 171
             |||||||||||||||||||||
Sbjct: 83801 attgtatgtcaaaattactct 83781
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>emb|AL831748.7| Zebrafish DNA sequence from clone DKEY-70P6 in linkage group 17
             Contains two novel genes, a novel gene similar to human
             and mouse URKL1 (uridine kinase-like 1), a novel gene
             similar to vertebrate SYP (synaptophysin), a novel gene
             similar to vertebrate CACNA1 (voltage-dependent calcium
             channel P/Q type alpha 1 subunit), a novel pseudogene
             similar to human and mouse EMILIN2 (elastin microfibril
             interfacer 2) and a CpG island, complete sequence
          Length = 202357

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 13    cattgaattgcatcatataaatcacaagg 41
             |||||| ||||||| ||||||||||||||
Sbjct: 57462 cattgacttgcatcttataaatcacaagg 57490
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>emb|BX649575.18| Zebrafish DNA sequence from clone CH211-215H12 in linkage group 8,
              complete sequence
          Length = 171493

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 13     cattgaattgcatcatataaatcacaagg 41
              |||||| ||||||| ||||||||||||||
Sbjct: 108452 cattgacttgcatcttataaatcacaagg 108480
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>gb|AC013251.19| Homo sapiens 3 BAC RP11-38P22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176251

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    atataaatcacaaggatgcag 47
             |||||||||||||||||||||
Sbjct: 35286 atataaatcacaaggatgcag 35306
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>ref|XM_236367.3| PREDICTED: Rattus norvegicus similar to talin 2 (LOC315776), mRNA
          Length = 8151

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 92   gagctgagagaagatgagggc 112
            |||||||||||||||||||||
Sbjct: 7651 gagctgagagaagatgagggc 7671
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>ref|NM_001035023.1| Bos taurus arsenic (+3 oxidation state) methyltransferase (AS3MT),
           mRNA
          Length = 1327

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 caaaaaagttgggttctgcc 198
           ||||||||||||||||||||
Sbjct: 707 caaaaaagttgggttctgcc 726
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>ref|XM_413760.1| PREDICTED: Gallus gallus similar to talin 2 (LOC415374), mRNA
          Length = 6855

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   gagctgagagaagatgaggg 111
            ||||||||||||||||||||
Sbjct: 6832 gagctgagagaagatgaggg 6851
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>gb|AC126046.3| Mus musculus BAC clone RP23-176P24 from chromosome 19, complete
             sequence
          Length = 240536

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcttctgcaacaaccttgca 219
             ||||||||||||||||||||
Sbjct: 12254 gcttctgcaacaaccttgca 12273
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>gb|AC092848.3| Homo sapiens BAC clone RP11-689A23 from 7, complete sequence
          Length = 66776

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    taaatcacaaggatgcagga 49
             ||||||||||||||||||||
Sbjct: 15818 taaatcacaaggatgcagga 15837
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>gb|DQ230892.1| Anopheles merus distal 2La inversion breakpoint region genomic
           sequence
          Length = 1518

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 272 gcatcatgttgccagcaaaacgcg 295
           |||||| |||||||||||||||||
Sbjct: 735 gcatcaagttgccagcaaaacgcg 758
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>gb|DQ230891.1| Anopheles gambiae strain Bamako distal 2La inversion breakpoint
            region genomic sequence
          Length = 2305

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 272  gcatcatgttgccagcaaaacgcg 295
            |||||| |||||||||||||||||
Sbjct: 1530 gcatcaagttgccagcaaaacgcg 1553
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>gb|DQ230889.1| Anopheles arabiensis distal 2La inversion breakpoint region genomic
            sequence
          Length = 2246

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 272  gcatcatgttgccagcaaaacgcg 295
            |||||| |||||||||||||||||
Sbjct: 1469 gcatcaagttgccagcaaaacgcg 1492
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>gb|AC142307.1| Pan troglodytes BAC clone RP43-131H12 from 7, complete sequence
          Length = 158646

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    taaatcacaaggatgcagga 49
             ||||||||||||||||||||
Sbjct: 96209 taaatcacaaggatgcagga 96190
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>emb|AL354758.14| Human DNA sequence from clone RP11-29P12 on chromosome 9, complete
             sequence
          Length = 92625

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   gctgcttgtaacctcttctc 368
             ||||||||||||||||||||
Sbjct: 37425 gctgcttgtaacctcttctc 37406
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>gb|AC160464.3| Mus musculus chromosome 7, clone RP23-256J14, complete sequence
          Length = 175716

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gcaggcaccctttcctgcaa 236
             ||||||||||||||||||||
Sbjct: 68337 gcaggcaccctttcctgcaa 68318
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>gb|AC144435.2| Homo sapiens fosmid clone XXFOS-801248E3 from 7, complete sequence
          Length = 43653

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   taaatcacaaggatgcagga 49
            ||||||||||||||||||||
Sbjct: 7542 taaatcacaaggatgcagga 7561
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>gb|AC153914.5| Mus musculus 10 BAC RP23-297H17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 174199

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaagcaataatacattgaat 20
              ||||||||||||||||||||
Sbjct: 152658 aaagcaataatacattgaat 152639
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>emb|CR394529.7| Zebrafish DNA sequence from clone CH211-121F17 in linkage group 24,
            complete sequence
          Length = 75984

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  aagagcaaactttaccagtt 134
            ||||||||||||||||||||
Sbjct: 6923 aagagcaaactttaccagtt 6904
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>gb|AC024947.5| Homo sapiens chromosome 01 clone RP11-200I10, complete sequence
          Length = 163033

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      agcaataatacattgaattg 22
              ||||||||||||||||||||
Sbjct: 118205 agcaataatacattgaattg 118186
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>gb|BC109908.1| Bos taurus arsenic (+3 oxidation state) methyltransferase, mRNA
           (cDNA clone IMAGE:8046766)
          Length = 1545

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 caaaaaagttgggttctgcc 198
           ||||||||||||||||||||
Sbjct: 887 caaaaaagttgggttctgcc 906
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>emb|CR387858.1| Gallus gallus finished cDNA, clone ChEST325c12
          Length = 963

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  gagctgagagaagatgaggg 111
           ||||||||||||||||||||
Sbjct: 181 gagctgagagaagatgaggg 200
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>dbj|AK053460.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130019K17 product:unclassifiable, full
            insert sequence
          Length = 4430

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  gcaggcaccctttcctgcaa 236
            ||||||||||||||||||||
Sbjct: 3142 gcaggcaccctttcctgcaa 3161
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>gb|BT021547.1| Bos taurus arsenic (+3 oxidation state) methyltransferase (AS3MT),
           mRNA, complete cds
          Length = 1327

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 caaaaaagttgggttctgcc 198
           ||||||||||||||||||||
Sbjct: 707 caaaaaagttgggttctgcc 726
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>emb|AL928825.6| Zebrafish DNA sequence from clone CH211-284P13, complete sequence
          Length = 199207

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 13     cattgaattgcatcatataaatca 36
              ||||||||||||| ||||||||||
Sbjct: 131183 cattgaattgcattatataaatca 131206
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>gb|AC147447.3| Gallus gallus BAC clone CH261-9P3 from chromosome unknown, complete
             sequence
          Length = 162933

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   actgagcttggtagagtcgt 337
             ||||||||||||||||||||
Sbjct: 63570 actgagcttggtagagtcgt 63551
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>emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on chromosome 4, complete
             sequence
          Length = 208805

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   cttgcaggcaccctttcctg 233
             ||||||||||||||||||||
Sbjct: 19314 cttgcaggcaccctttcctg 19295
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>gb|AC153551.4| Mus musculus 10 BAC RP23-383A7 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 216106

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    aaagcaataatacattgaat 20
            ||||||||||||||||||||
Sbjct: 5175 aaagcaataatacattgaat 5156


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,101,233
Number of Sequences: 3902068
Number of extensions: 4101233
Number of successful extensions: 80809
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80674
Number of HSP's gapped (non-prelim): 129
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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