ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal22l16 |
|---|---|
| Clone Library Name | barley_pub |
>DKC1_DROME (O44081) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Nucleolar protein AT band 60B) (Protein minifly) Length = 508 Score = 30.8 bits (68), Expect = 0.82 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 225 VKLGSEATLSELLHHVIHKLHAAAVRQPAYPKKWGL 118 + L + AT++ H V+ K+ + + YP+KWGL Sbjct: 345 IALMTTATMASCDHGVVAKIKRVIMERDTYPRKWGL 380
>DKC1_RAT (P40615) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Dyskerin) (Nucleolar protein family A member 4) (snoRNP protein DKC1) (Nopp140-associated protein of 57 kDa) (Nucleolar protein NAP57) Length = 508 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 225 VKLGSEATLSELLHHVIHKLHAAAVRQPAYPKKWGL 118 + L + A +S H V+ K+ + + YP+KWGL Sbjct: 347 IALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 382
>DKC1_CHICK (Q5ZJH9) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Dyskerin) Length = 516 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 225 VKLGSEATLSELLHHVIHKLHAAAVRQPAYPKKWGL 118 + L + A +S H V+ K+ + + YP+KWGL Sbjct: 345 IALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 380
>FOXD4_MOUSE (Q60688) Forkhead box protein D4 (Forkhead-related protein FKHL9)| (Forkhead-related transcription factor 5) (FREAC-5) (Transcription factor FKH-2) Length = 444 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/40 (45%), Positives = 24/40 (60%) Frame = +3 Query: 114 QPAPISLGKQAASPLQHVACGSHGEVVQKXWPRSPI*LQQ 233 Q P L QAASPL H++ GS + Q+ P+ P+ LQQ Sbjct: 352 QHPPCLLHPQAASPLFHMSAGSRTILPQQ--PQPPLPLQQ 389
>DKC1_HUMAN (O60832) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Dyskerin) (Nucleolar protein family A member 4) (snoRNP protein DKC1) (Nopp140-associated protein of 57 kDa) (Nucleolar protein NAP57) (CBF5 homolog) Length = 513 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = -1 Query: 225 VKLGSEATLSELLHHVIHKLHAAAVRQPAYPKKWGL 118 + L + A +S H ++ K+ + + YP+KWGL Sbjct: 346 IALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGL 381
>DDX28_MACFA (Q4R4T6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)| (Mitochondrial DEAD box protein 28) Length = 546 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = +3 Query: 33 KRKTVQRQKHRPSVPF*G---CGCRRPLFRQPAPISLGKQAASPL 158 +R++ QR RP + G RRP F QPA ++LG+ ++PL Sbjct: 48 QRQSRQRNLPRPVLARPGRLLVSARRPEFNQPARLTLGRWESAPL 92
>DKC1_MOUSE (Q9ESX5) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Dyskerin) (Nucleolar protein family A member 4) (snoRNP protein DKC1) (Nopp140-associated protein of 57 kDa) (Nucleolar protein NAP57) Length = 508 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = -1 Query: 225 VKLGSEATLSELLHHVIHKLHAAAVRQPAYPKKWGL 118 + L + A +S H ++ K+ + + YP+KWGL Sbjct: 346 IALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGL 381
>GGT_PSEUA (P36267) Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2)| [Contains: Gamma-glutamyltransferase large chain; Gamma-glutamyltransferase small chain] Length = 575 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -1 Query: 219 LGSEATLSELLHHVIHKLHAAAVRQPAYPKKWGLAGEIKVG 97 LG + L H++ K +AA +R P+K G++ EIK G Sbjct: 327 LGDPDFVKNPLAHLLDKDYAAKIRAAINPQKAGISQEIKPG 367
>TSP4_BRARE (Q8JGW0) Thrombospondin-4 precursor (Thbs4)| Length = 949 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = -3 Query: 187 SPCDPQATCCSGEAACLPKEMGAGWRNKG 101 +PCDP A C + + G GW G Sbjct: 419 NPCDPNAQCTEERDGTITCQCGIGWAGNG 447
>LGT_AQUAE (O66627) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 272 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +2 Query: 80 LGLWLSPTFISPASP--HFFG*AGCLTAAAC 166 L LW S +PA HFFG GC +A C Sbjct: 108 LPLWKSADIAAPAIALAHFFGRLGCTSAGCC 138
>CYSX_ECOLI (P20343) Very hypothetical protein cysX| Length = 130 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +3 Query: 36 RKTVQRQKHRPSVPF*GCGCRRPLFRQPAPISLGKQAASPLQ 161 R + ++HR V C C PL QP ++G Q LQ Sbjct: 88 RVNIDLERHRNLVLQKDCQCATPLIPQPVTDAIGLQGMKTLQ 129
>RPOB_NEPOL (Q9TL06) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1109 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -1 Query: 210 EATLSELLHHVIHKLHAAAVRQPAYPKKWGLAGEIKVGDSHSPKMARWAY 61 +A + +L+H V K+HA A + + L G K G +M WA+ Sbjct: 980 QAYMLKLIHQVDDKIHARATGPYSLITQQPLGGRSKRGGQRLGEMEVWAF 1029 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,610,055 Number of Sequences: 219361 Number of extensions: 1158619 Number of successful extensions: 2678 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2613 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2678 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
