| Clone Name | rbaal23a13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF422696.1| Staphylococcus aureus strain HU25 SCCmec type III sequence between Tn554 and orfX Length = 9515 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 atatcaattccaaaaaatttaa 85 |||||||||||||||||||||| Sbjct: 7138 atatcaattccaaaaaatttaa 7117
>dbj|AB037671.1| Staphylococcus aureus DNA, type III staphylococcal cassette chromosome mec, strain 85/2082 Length = 68256 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 atatcaattccaaaaaatttaa 85 |||||||||||||||||||||| Sbjct: 65818 atatcaattccaaaaaatttaa 65797
>dbj|AB047089.2| Staphylococcus aureus DNA, right extremity of Type-III SCCmec (Staphylococcal cassette chromosome mec) and it's flanking chromosomal region, strain:85/3907 Length = 30059 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 atatcaattccaaaaaatttaa 85 |||||||||||||||||||||| Sbjct: 27618 atatcaattccaaaaaatttaa 27597
>dbj|AB038513.1| Staphylococcus aureus DNA, SRImec-III and SCCmec-III region, strain:85/2082 Length = 23752 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 atatcaattccaaaaaatttaa 85 |||||||||||||||||||||| Sbjct: 21314 atatcaattccaaaaaatttaa 21293
>ref|XM_724640.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00194) partial mRNA Length = 3696 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 gccaatatcaattccaaaaaattta 84 |||||||||||||| |||||||||| Sbjct: 2488 gccaatatcaattctaaaaaattta 2512
>ref|XM_674239.1| Plasmodium berghei strain ANKA hypothetical protein (PB000633.01.0) partial mRNA Length = 3822 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 caaaaaatttaatttgaattt 94 ||||||||||||||||||||| Sbjct: 3267 caaaaaatttaatttgaattt 3287
>gb|AC022541.11| Homo sapiens chromosome 10 clone RP11-4O7, complete sequence Length = 163179 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 aaatttaatttgaatttttga 98 ||||||||||||||||||||| Sbjct: 49503 aaatttaatttgaatttttga 49483
>gb|AC069026.5| Homo sapiens chromosome 10 clone RP11-561F6, complete sequence Length = 171142 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 aaatttaatttgaatttttga 98 ||||||||||||||||||||| Sbjct: 151123 aaatttaatttgaatttttga 151103
>emb|Z81039.1|CEC25D7 Caenorhabditis elegans Cosmid C25D7, complete sequence Length = 42361 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 69 aattccaaaaaatttaatttgaatttttg 97 |||||||||||||||||||| | |||||| Sbjct: 28876 aattccaaaaaatttaatttaagtttttg 28904
>emb|AL132949.2|CEY53F4B Caenorhabditis elegans YAC Y53F4B, complete sequence Length = 227606 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 aaaaatttaatttgaattttt 96 ||||||||||||||||||||| Sbjct: 79650 aaaaatttaatttgaattttt 79630
>gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093E24, complete sequence Length = 146492 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aaaatttaatttgaattttt 96 |||||||||||||||||||| Sbjct: 73912 aaaatttaatttgaattttt 73931
>gb|AY448010.1|AY448010S1 Ipomoea trifida haplotype S1 self-incompatibility (S-) locus, contig SR1 Length = 82054 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 atttaatttgaatttttgag 99 |||||||||||||||||||| Sbjct: 74577 atttaatttgaatttttgag 74596
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 attccaaaaaatttaatttgaatt 93 |||||||||||||||||| ||||| Sbjct: 84157 attccaaaaaatttaattagaatt 84180
>emb|Z81068.1|CEF25H5 Caenorhabditis elegans Cosmid F25H5, complete sequence Length = 38692 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 aaaaaatttaatttgaatttttga 98 ||||||||||| |||||||||||| Sbjct: 32544 aaaaaatttaagttgaatttttga 32567
>emb|Z72518.1|CEZC374 Caenorhabditis elegans Cosmid ZC374, complete sequence Length = 20600 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 caattccaaaaaatttaatt 87 |||||||||||||||||||| Sbjct: 501 caattccaaaaaatttaatt 482
>emb|AL021497.1|CEY51A2D Caenorhabditis elegans YAC Y51A2D, complete sequence Length = 139259 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 aaaaatttaatttgaatttt 95 |||||||||||||||||||| Sbjct: 123580 aaaaatttaatttgaatttt 123561
>gb|L07143.2| Caenorhabditis elegans cosmid B0523, complete sequence Length = 18334 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 aaaaatttaatttgaatttt 95 |||||||||||||||||||| Sbjct: 10476 aaaaatttaatttgaatttt 10457
>gb|AC141322.24| Medicago truncatula clone mth2-8e1, complete sequence Length = 87559 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 caattccaaaaaatttaatttgaa 91 ||||||||||| |||||||||||| Sbjct: 47186 caattccaaaatatttaatttgaa 47163 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 caattccaaaaaatttaatttgaa 91 ||||||||||| |||||||||||| Sbjct: 42820 caattccaaaatatttaatttgaa 42797
>gb|AC148292.8| Medicago truncatula clone mth2-15m24, complete sequence Length = 120077 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 ttcttctcctaaatgattac 222 |||||||||||||||||||| Sbjct: 22674 ttcttctcctaaatgattac 22655
>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence Length = 85905 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aatttaatttgaatttttga 98 |||||||||||||||||||| Sbjct: 84654 aatttaatttgaatttttga 84673
>emb|AL137145.13| Human DNA sequence from clone RP11-563J2 on chromosome 10 Contains the 3' end of the PRKCQ gene for protein kinase C, theta and a CpG island, complete sequence Length = 189767 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 aaatttaatttgaatttttg 97 |||||||||||||||||||| Sbjct: 64248 aaatttaatttgaatttttg 64267
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 attccaaaaaatttaatttgaatt 93 |||||||||||||||||| ||||| Sbjct: 84405 attccaaaaaatttaattagaatt 84428
>emb|BX649451.4| Zebrafish DNA sequence from clone DKEY-206M7 in linkage group 10, complete sequence Length = 97299 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ttatgggccaatatcaattc 73 |||||||||||||||||||| Sbjct: 58853 ttatgggccaatatcaattc 58834
>gb|AF217651.1| Drosophila melanogaster c11.1 gene, partial cds; lozenge (lz) and c12.1 genes, complete cds; and c12.2 gene, partial cds Length = 45142 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 36491 aaaaaatttaatttaaatttttga 36468
>gb|AC092952.4| Homo sapiens 3 BAC RP11-332P22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168234 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ctctccttggtgcatagcct 172 |||||||||||||||||||| Sbjct: 38062 ctctccttggtgcatagcct 38081
>gb|AC023705.4| Drosophila melanogaster X BAC RP98-7L6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184796 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 67006 aaaaaatttaattttaatttttga 67029 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 49380 aaaaaatttaatttcaatttttga 49403
>gb|AC105350.2| Drosophila melanogaster X BAC RP98-30C13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184334 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 59003 aaaaaatttaatttaaatttttga 59026
>gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 103196 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 90105 aaaaaatttaatttaaatttttga 90082
>gb|AF361326.1|AF361326 Folsomia candida labial gene, partial cds Length = 879 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 aatttaatttgaatttttga 98 |||||||||||||||||||| Sbjct: 497 aatttaatttgaatttttga 478
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aaaatttaatttgaattttt 96 |||||||||||||||||||| Sbjct: 8151679 aaaatttaatttgaattttt 8151698
>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence Length = 54313 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aaaaaatttaatttgaattt 94 |||||||||||||||||||| Sbjct: 30786 aaaaaatttaatttgaattt 30767
>gb|AC092601.3| Homo sapiens BAC clone RP11-125M15 from 2, complete sequence Length = 198364 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 caaaaaatttaatttgaatt 93 |||||||||||||||||||| Sbjct: 62660 caaaaaatttaatttgaatt 62641
>gb|AY117382.1| Chrysomela lapponica haplotype ClapF mitochondrial control region, complete sequence Length = 4640 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aaaatttaatttgaattttt 96 |||||||||||||||||||| Sbjct: 1205 aaaatttaatttgaattttt 1224
>gb|U41625.1| Caenorhabditis elegans cosmid K03A1, complete sequence Length = 35227 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 aaaaatttaatttgaatttt 95 |||||||||||||||||||| Sbjct: 34259 aaaaatttaatttgaatttt 34278
>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete sequence Length = 307201 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 173656 aaaaaatttaatttcaatttttga 173633 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 156030 aaaaaatttaattttaatttttga 156007
>gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 of 74 of the complete sequence Length = 288721 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 34627 aaaaaatttaatttaaatttttga 34650
>gb|AE003446.4| Drosophila melanogaster chromosome X, section 30 of 74 of the complete sequence Length = 290970 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 264718 aaaaaatttaatttaaatttttga 264695
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 attccaaaaaatttaatttgaatt 93 |||||||||||||||||| ||||| Sbjct: 84155 attccaaaaaatttaattagaatt 84178
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 aaaaaatttaatttgaatttttga 98 |||||||||||||| ||||||||| Sbjct: 59824 aaaaaatttaatttaaatttttga 59801
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 attccaaaaaatttaatttgaatt 93 |||| ||||||||||||||||||| Sbjct: 83925 attcaaaaaaatttaatttgaatt 83948
>emb|AL672248.13| Mouse DNA sequence from clone RP23-82A12 on chromosome X, complete sequence Length = 192322 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aaaatttaatttgaattttt 96 |||||||||||||||||||| Sbjct: 104303 aaaatttaatttgaattttt 104284
>emb|AL831773.2| Mouse DNA sequence from clone RP23-296B1 on chromosome 4, complete sequence Length = 154298 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aaaaaatttaatttgaattt 94 |||||||||||||||||||| Sbjct: 63795 aaaaaatttaatttgaattt 63776 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,220,031 Number of Sequences: 3902068 Number of extensions: 3220031 Number of successful extensions: 67553 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67422 Number of HSP's gapped (non-prelim): 131 length of query: 307 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 285 effective length of database: 17,147,199,772 effective search space: 4886951935020 effective search space used: 4886951935020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)